Opuntia fragilis (Cactaceae) verified in Illinois flora

Opuntia fragilis has been reported only once from Illinois. Recent workers have not been able to find a substantiating specimen and have excluded the species from the flora. The missing specimen has now been found and is referable to this species.     

Gastro-intestinal helminths in white-tailed deer (Odocoileus virginianus) of Illinois.

Two deer populations, one in northern Illinois the other in southern Illinois, were examined by necropsy (n = 44 and 40 respectively) for helminth parasites of the gastro-intestinal tract and abdominal cavity. Both herds were parasitized by Apteragia odocoilei, Haemonchus contortus, Gongylonema pulchrum, Setaria yehi, Trichuris ovis, and Moniezia benedeni. Nematodirus sp. was found only in deer of northern Illinois. Ostertagia mossi, Capillaria sp., Cooperia sp., and Oesophagostomum sp. were found only in deer of southern Illinois.     

Protein/Protein Interactions (PDZ) in Proximal Tubules

The Journal of Membrane Biology -     

Climate and heat-related emergencies in Chicago, Illinois (2003–2006)

Extreme heat events are responsible for more deaths in the United States than floods, hurricanes and tornados combined. Yet, highly publicized events, such as the 2003 heat wave in Europe which caused in excess of 35,000 deaths, and the Chicago heat wave of 1995 that produced over 500 deaths, draw attention away from the countless thousands who, each year, fall victim to nonfatal health emergencies and illnesses directly attributed to heat. The health impact of heat waves and excessive heat are well known. Cities worldwide are seeking to better understand heat-related illnesses with respect to the specifics of climate, social demographics and spatial distributions. This information can support better preparation for heat-related emergency situations with regards to planning for response capacity and placement of emergency resources and personnel. This study deals specifically with the relationship between climate and heat-related dispatches (HRD, emergency 911 calls) in Chicago, Illinois, between 2003 and 2006. It is part of a larger, more in-depth, study that includes urban morphology and social factors that impact heat-related emergency dispatch calls in Chicago. The highest occurrences of HRD are located in the central business district, but are generally scattered across the city. Though temperature can be a very good predictor of high HRD, heat index is a better indicator. We determined temperature and heat index thresholds for high HRD. We were also able to identify a lag in HRD as well as other situations that triggered higher (or lower) HRD than would typically be generated for the temperature and humidity levels, such as early afternoon rainfall and special events.     

Protein (western) blotting

The different steps involved in protein (Western) blotting and subsequent analysis of the proteins are reviewed. Electrophoretic separation of proteins, procedures of transfer to membranes, immunological and nonimmunological protein detection systems, and characterization of protein-nucleic acid and protein-protein interactions are described. Emphasis is on the sensitivity of the methods described and on possible variations that allow the individual steps of Western blotting to be adapted to specific questions.     

Protein S-acylation in plants (Review)

Membrane resident proteins are a common feature of biology yet many of these proteins are not integral to the membrane. These peripheral membrane proteins are often bound to the membrane by the addition of fatty acyl chains to the protein. This modification, known as S-acylation or palmitoylation, promotes very strong membrane association but is also reversible allowing for a high degree of control over membrane association. Many S-acylated proteins are resident in sterol, sphingolipid and saturated-lipid enriched microdomains indicating an important role for S-acylation in protein partitioning within membranes. This review summarises the current knowledge of S-acylation in plants. S-acylated proteins play a wide variety of roles in plants and affect Ca²⁺ signalling, K⁺ movement, stress signalling, small and heterotrimeric G-protein membrane association and partitioning, tubulin function as well as pathogenesis. Although the study of S-acylation is in its infancy in plants this review illustrates that S-acylation is extremely important for plant function and that there are many unexplored aspects of S-acylation in plants. A full summary of the techniques and methods available to study S-acylation in plants is also presented.     

The Female-specific Protein (Vitellogenic Protein) in Crustacea with Particular Reference to Orchestic gammarella (Amphipoda)

Comparative electrophoretic studies of male and female hemolymphin Crustacea have led to the discovery of a lipoglycoproteinfraction present in females and absent from males. The female-specificprotein fraction also contains a pigment which has been identifiedin a small number of species and appears to be a carotenoid.Further observations indicated that the presence of this fractionis coincident with the presence of maturing ovocytes in theovary. The major protein component of the vitellus is also alipoglycocarotenoprotein complex. Comparative analyses haveshown that the female-specific protein fraction present in hemolymphand the major protein component of the vitellus are electrophoreticallyand immunochemically identical. Moreover, in the Amphipod Orchestiagammarella both components appear to have the same molecularweight, estimated as approximately 3 x 10⁵ by Sephadex G 200gel filtration. Although there is ample evidence to supportthe idea that the female-specific protein is synthesized externallyto the ovary, the site of synthesis still remains unknown. Experimentallyinduced sex reversal in O. gammarella indicates that the synthesisof the female specific protein is under ovarian control.     

Contrasting population characteristics of yellow bass (Morone mississippiensis) in two southern Illinois reservoirs

Two southern Illinois reservoirs were investigated with contrasting size structures of yellow bass (Morone mississippiensis) to compare growth, mortality and recruitment patterns. Yellow bass were collected from Crab Orchard and Little Grassy lakes during April–May 2009 using AC electrofishing. Total length and weight were recorded and sagittal otoliths sectioned and aged by two readers. Increments between otolith annuli were measured and the Weisberg linear growth model was used to assess age and environmental (growth year) effects on individual growth for fish from the two lakes. Von Bertalanffy growth models indicated faster growth and a greater maximum total length for yellow bass in Little Grassy Lake. However, growth of fish in Little Grassy Lake nearly ceased after age 4. The Weisberg model indicated differences in individual growth rate between the two lakes that were consistent across years (age effects were significant, but growth year effects and the age‐growth year interaction were not). Inter‐lake differences in fish growth were present up to age 3. Recruitment was relatively stable in Crab Orchard, with year classes up to age 7 observed. Recruitment was more erratic in Little Grassy, with age 5 being the dominant year class and fish up to age 11 present. Differences in growth and recruitment patterns for yellow bass in the two lakes may be attributed to substantial inter‐lake differences in turbidity, morphoedaphic index, or yellow bass density. Maximum age of yellow bass (age 11) was higher than previously reported for this species, likely due to the use of otoliths to age fish rather than scales. This study provides baseline information on age and growth, mortality, recruitment, and size structure of yellow bass that can be compared to data in future studies to elucidate factors influencing population dynamics of this species.     

Chironomidae (Diptera) of Baldwin Lake,Illinois, a cooling reservoir

The chironomid fauna of Baldwin Lake, a closed-cycle cooling reservoir for a power plant, was sampled monthly to semi-monthly for one year at four stations, two in the discharge channel and two in the main basin. Qualitative samples were also taken elsewhere and with multiple-plate samplers. Twenty-four species were collected. Annual mean population density was less than 100 larvae m^–2 in the channel, 1037 M^–2 in the main basin. Three species of Tanypodinae formed over 96 percent of the larval population in the main basin: Tanypus stellatus Coquillett, Procladius bellus (Loew), and Coelotanypus concinnus (Coquillett). The principal species on the multiple-plate samplers were Dicrotendipes nervosus (Staeger), Glyptotendipes lobiferus (Say), and Parachironomus monochromus (Wulp). Temperatures of 35°C or more in the channel virtually eliminated the chironomids, whereas temperatures up to 32°C in the main basin increased the number of generations of T. stellatus from the usual two to four at Station 3 and three at Station 4. Station 3 had almost 1,000 degree-days more heat than Station 4.     

Forecasting seasonal population growth of Aphis glycines (Hemiptera: Aphididae) in soybean in Illinois

From 2001 to 2004, 252 fifty-plant samples were collected from commercial soybean, Glycine max L., fields in three townships (93-km2 area) in Illinois. Townships were sampled every 3 wk from late June or early July when aphids (Aphis glycines Matsumura) first invaded the townships to early August. We used linear regression of 18 mean township field densities to calibrate several simple models to predict the change in aphid population density in a township from one sampling date to the next. The best exponential model for the complete data set has an r2 = 0.54, Y2 = Ylexp (0.09659 x DAY), where Y1 and Y2 are the first and second samples of aphids separated by a 3-wk period (the number of days, DAY). Our intrinsic rate of increase for the population is much lower than rates calculated in other studies. The best single-variable linear model has an r2 = 0.88, Y2 = Y1 + 0.1084 x Y1 x DAY. The latter model indicates the value of including monitoring data in the prediction. The best two-variable model has an R2 = 0.98, Y2 = Y1 + 0.08136 x Y1 x DAY + 0.000080 x N1(2) x DAY, where N1(2) x DAY is the interaction term for initial, squared, sample density of the season multiplied by the number of days between samples. The latter two models indicate that the change in the population density is greater for more dense populations. Degree-days were generally inferior to days as the time component in the simple models.     

Protein acyl thioesterases (Review)

Many proteins are S-acylated, affecting their localization and function. Dynamic S-acylation in response to various stimuli has been seen for several proteins in vivo. The regulation of S-acylation is beginning to be elucidated. Proteins can autoacylate or be S-acylated by protein acyl transferases (PATs). Deacylation, on the other hand, is an enzymatic process catalyzed by protein thioesterases (APT1 and PPT1) but only APT1 appears to be involved in the regulation of the reversible S-acylation of cytoplasmic proteins seen in vivo. PPT1, on the other hand, is involved in the lysosomal degradation of S-acylated proteins and PPT1 deficiency causes the disease infant neuronal ceroid lipofuscinosis.     

Inhibition of Pokeweed Antiviral Protein (PAP) by Turnip Mosaic Virus Genome-linked Protein (VPg)

Pokeweed antiviral protein (PAP) from Phytolacca americana is a ribosome-inactivating protein (RIP) and an RNA N-glycosidase that removes specific purine residues from the sarcin/ricin loop of large rRNA, arresting protein synthesis at the translocation step. PAP is also a cap-binding protein and is a potent antiviral agent against many plant, animal, and human viruses. To elucidate the mechanism of RNA depurination, and to understand how PAP recognizes and targets various RNAs, the interactions between PAP and turnip mosaic virus genome-linked protein (VPg) were investigated. VPg can function as a cap analog in cap-independent translation and potentially target PAP to uncapped IRES-containing RNA. In this work, fluorescence spectroscopy and HPLC techniques were used to quantitatively describe PAP depurination activity and PAP-VPg interactions. PAP binds to VPg with high affinity (29.5 nm); the reaction is enthalpically driven and entropically favored. Further, VPg is a potent inhibitor of PAP depurination of RNA in wheat germ lysate and competes with structured RNA derived from tobacco etch virus for PAP binding. VPg may confer an evolutionary advantage by suppressing one of the plant defense mechanisms and also suggests the possible use of this protein against the cytotoxic activity of ribosome-inactivating proteins.     

Prion sequence polymorphisms and chronic wasting disease resistance in Illinois white-tailed deer (Odocoileus virginianus)

Nucleic acid sequences of the prion gene (PRNP) were examined and genotypes compiled for 76 white-tailed deer from northern Illinois, which previously tested positive for chronic wasting disease (CWD), and 120 negative animals selected to control for geographic location and age. Nine nucleotide polymorphisms, seven silent and two coding, were found in the sampled population. All observed polymorphisms except two of very low frequency were observed in both negative and positive animals, although five polymorphic loci had significantly different distributions of alleles between infected and non-infected individuals. Nucleotide base changes 60C/T, 285A/C, 286G/A, and 555C/T were observed with higher than expected frequencies in CWD negative animals suggesting disease resistance, while 153C/T was observed more than expected in positive animals, suggesting susceptibility. The two coding polymorphisms, 285A/C (Q95H) and 286G/A (G96S), have been described in white-tailed deer populations sampled in Colorado and Wisconsin. Frequency distributions of coding polymorphisms in Wisconsin and Illinois deer populations were different, an unexpected result considering the sampled areas are less than 150 km apart. The total number of polymorphisms per animal, silent or coding, was negatively correlated to disease status. The potential importance of silent polymorphisms (60C/T, 153C/T, 555C/T), either individually or cumulatively, in CWD disease status has not been previously reported.     

Melanosclerites from the Wilhelmi Formation (Lower Silurian,north-eastern Illinois,USA)

Melanosclerites, a little-known group of organic microfossils, are recorded for the first time from the Lower Silurian Wilhelmi Formation, Illinois, USA. The taxa described herein include Melanorhachis regularis Eisenack, 1942, Melanoarbustum balticum Górka 1971, Melanocyathus dentatus Eisenack, 1942, Eichbaumia incus? Schallreuter, 1981, Menola os Schallreuter, 1981 and Melanoporella clava Schallreuter, 1981.