On the suitability of input–output analysis for calculating product-specific biodiversity footprints

Recently it has been estimated that one third of biodiversity threats are driven by consumer demand from outside the country in which the threat occurs. This occurs when the production of export goods exerts pressure on vulnerable populations. While population biologists have in cases been able to establish links between species threats and the causative industry(s), little has been done to trace this biodiversity footprint from the directly implicated industry out to final consumers, a step that would open a wider variety of policy responses. Here we investigate the suitability of multi-region input–output (MRIO) analysis for tracing out links between particular species threats, directly implicated industries, and the countries and consumer goods sectors ultimately driving these industries. Environmentally extended MRIO models are understood to provide reliable results at a macroeconomic level but uncertainty increases as the models are used to investigate individual sectors, companies, and products. In this study we examine several case studies (nickel mining in New Caledonia, coltan from the Democratic Republic of Congo, cut flowers from Kenya, and forestry in Papua New Guinea) in order to understand how and when MRIO techniques can be useful for studying biodiversity implicated supply chains. The study was conducted using the Eora global input–output database that documents >5 billion global supply chains. Calculating the biodiversity footprint at this level of detail, between specific threats, supply chains, and consumer goods, has not been done before. These case studies provide interesting insights in their own right and also serve to highlight the strengths and weaknesses of using input–output analysis techniques to calculate detailed biodiversity footprints. We conclude that MRIO analysis, while no panacea, can be useful for outlining supply chains and identifying which consumption sectors and trade and transformation steps can be subjected to closer analysis in order to enable remedial action.     

Biodiversity loss and the taxonomic bottleneck: emerging biodiversity science

Human domination of the Earth has resulted in dramatic changes to global and local patterns of biodiversity. Biodiversity is critical to human sustainability because it drives the ecosystem services that provide the core of our life-support system. As we, the human species, are the primary factor leading to the decline in biodiversity, we need detailed information about the biodiversity and species composition of specific locations in order to understand how different species contribute to ecosystem services and how humans can sustainably conserve and manage biodiversity. Taxonomy and ecology, two fundamental sciences that generate the knowledge about biodiversity, are associated with a number of limitations that prevent them from providing the information needed to fully understand the relevance of biodiversity in its entirety for human sustainability: (1) biodiversity conservation strategies that tend to be overly focused on research and policy on a global scale with little impact on local biodiversity; (2) the small knowledge base of extant global biodiversity; (3) a lack of much-needed site-specific data on the species composition of communities in human-dominated landscapes, which hinders ecosystem management and biodiversity conservation; (4) biodiversity studies with a lack of taxonomic precision; (5) a lack of taxonomic expertise and trained taxonomists; (6) a taxonomic bottleneck in biodiversity inventory and assessment; and (7) neglect of taxonomic resources and a lack of taxonomic service infrastructure for biodiversity science. These limitations are directly related to contemporary trends in research, conservation strategies, environmental stewardship, environmental education, sustainable development, and local site-specific conservation. Today’s biological knowledge is built on the known global biodiversity, which represents barely 20% of what is currently extant (commonly accepted estimate of 10 million species) on planet Earth. Much remains unexplored and unknown, particularly in hotspots regions of Africa, South Eastern Asia, and South and Central America, including many developing or underdeveloped countries, where localized biodiversity is scarcely studied or described. "Backyard biodiversity", defined as local biodiversity near human habitation, refers to the natural resources and capital for ecosystem services at the grassroots level, which urgently needs to be explored, documented, and conserved as it is the backbone of sustainable economic development in these countries. Beginning with early identification and documentation of local flora and fauna, taxonomy has documented global biodiversity and natural history based on the collection of "backyard biodiversity" specimens worldwide. However, this branch of science suffered a continuous decline in the latter half of the twentieth century, and has now reached a point of potential demise. At present there are very few professional taxonomists and trained local parataxonomists worldwide, while the need for, and demands on, taxonomic services by conservation and resource management communities are rapidly increasing. Systematic collections, the material basis of biodiversity information, have been neglected and abandoned, particularly at institutions of higher learning. Considering the rapid increase in the human population and urbanization, human sustainability requires new conceptual and practical approaches to refocusing and energizing the study of the biodiversity that is the core of natural resources for sustainable development and biotic capital for sustaining our life-support system. In this paper we aim to document and extrapolate the essence of biodiversity, discuss the state and nature of taxonomic demise, the trends of recent biodiversity studies, and suggest reasonable approaches to a biodiversity science to facilitate the expansion of global biodiversity knowledge and to create useful data on backyard biodiversity worldwide towards human sustainability.     

Concave trade-off curves between crop production and taxonomic,functional and phylogenetic diversity of birds

In a context of land scarcity, food production and biodiversity conservation objectives compete for land. The shape of the relationship between these two objectives may be helpful to inform decision-making. However, the metrics used to evaluate this relationship have so far been restricted to species abundances and species richness, which give no information on possible consequences on ecosystem functioning or on evolution history. Indeed, the shapes of the relationship between food production and other diversity facets, such as functional diversity and phylogenetic diversity, have rarely been studied. We considered 3 diversity facets: taxonomic diversity, functional diversity and phylogenetic diversity. For each facet, several biodiversity metrics have been proposed. The objective of this work was to investigate whether the shape of the trade-off curve between food production and biodiversity metrics depended on the considered facet of biodiversity. Using data from the national agricultural statistics, we computed edible energy from crops and from livestock on a nation-wide gradient covering French agroecosystems. Using bird observation data provided by the French Breeding Bird Survey (FBBS), we computed 9 (3 for each facet) biodiversity metrics in 516 different sites of the FBBS. The trade-off curves were then computed using additive mixed models. All metrics decreased along a crop production gradient. For functional and taxonomic diversity metrics, the slope was steeper at high levels of production, suggesting that actions aiming at increasing local taxonomic or functional diversity may be more efficient in regions with highest crop production, if restoration follows the same trajectory as biodiversity loss. The decrease was steeper for functional diversity than for taxonomic diversity, suggesting that agriculture can reduce the functional diversity of birds more than their taxonomic diversity.     

Representing biodiversity: Data and procedures for identifying priority areas for conservation

Biodiversity priority areas together should represent the biodiversity of the region they are situated in. To achieve this, biodiversity has to be measured, biodiversity goals have to be set and methods for implementing those goals have to be applied. Each of these steps is discussed. Because it is impossible to measure all of biodiversity, biodiversity surrogates have to be used. Examples are taxa sub-sets, species assemblages and environmental domains. Each of these has different strengths and weaknesses, which are described and evaluated. In real-world priority setting, some combination of these is usually employed. While a desirable goal might be to sample all of biodiversity from genotypes to ecosystems, an achievable goal is to represent, at some agreed level, each of the biodiversity features chosen as surrogates. Explicit systematic procedures for implementing such a goal are described. These procedures use complementarity, a measure of the contribution each area in a region makes to the conservation goal, to estimate irreplaceability and flexibility, measures of the extent to which areas can be substituted for one another in order to take competing land uses into account. Persistence and vulnerability, which also play an important role in the priority setting process, are discussed briefly.     

Morphology and Phylogenetic Placement of Three New Zoothamnium species (Ciliophora: Peritrichia) from Coastal Waters of Southern China

The morphology, infraciliature, and silverline system of three peritrichous ciliates, Zoothamnium bucciniiformum sp. n., Zoothamnium florens sp. n., and Zoothamnium zhanjiangense sp. n., were investigated based on both living and silver‐stained specimens. Zoothamnium bucciniiformum sp. n., collected from coastal waters (salinity 30‰) off Zhanjiang, southern China, can be distinguished by the following characters: dichotomously branched stalk, peristomial lip with medial circumferential infolding, contractile vacuole apically positioned, 32–49 silverlines between the anterior end and the aboral trochal band, 15–26 between the aboral trochal band and the scopula; two kineties in peniculus 3, not parallel to each other. Zoothamnium florens sp. n., collected from a mangrove wetland (salinity 13‰) off Zhanjiang, is characterized by its large conical zooid, tuberculate peristomial lip, asymmetrical dichotomously branched colony, 59–81 silverlines between the anterior end and the aboral trochal band and 29–36 between the aboral trochal band and the scopula. Zoothamnium zhanjiangense, collected from a mangrove wetland (salinity about 9.5‰) off Zhanjiang, differs from its congeners by the alternately branched stalk, peristomial lip with medial circumferential infolding, 40–63 silverlines from the peristomial area to the aboral trochal band and 13–24 from the aboral trochal band to the scopula. The comparison and analysis of SSU rDNA sequences also support present identifications.     

A review of progress towards the conservation of the Killarney Fern (Trichomanes speciosum Willd.) in the British Isles

Summary

The Killarney Fern (Trichomanes speciosum) was considered amongst the rarest and most vulnerable of Europe's plants. Research which fed into the Biodiversity Action Plan and developed alongside it, has forced us to reconsider the level of threat to this species. A hitherto overlooked stage of the life-cycle, the gametophyte, has been shown to be comparatively abundant, genetically diverse, largely threat-free and with the potential over time to regenerate the familiar sporophyte stage. This research also promoted wider public interest which itself generated additional records, such that even the sporophyte is now known at more British sites than at any time previously and the species is accordingly considered ‘recovered’. However, continued legal protection and the need for further research are still recommended.     

Role of DNA barcoding in marine biodiversity assessment and conservation: An update

More than two third area of our planet is covered by oceans and assessment of marine biodiversity is a challenging task. With the increasing global population, there is a tendency to exploit marine resources for food, energy and other requirements. This puts pressure on the fragile marine environment and necessitates sustainable conservation efforts. Marine species identification using traditional taxonomical methods is often burdened with taxonomic controversies. Here we discuss the comparatively new concept of DNA barcoding and its significance in marine perspective. This molecular technique can be useful in the assessment of cryptic species which is widespread in marine environment and linking the different life cycle stages to the adult which is difficult to accomplish in the marine ecosystem. Other advantages of DNA barcoding include authentication and safety assessment of seafood, wildlife forensics, conservation genetics and detection of invasive alien species (IAS). Global DNA barcoding efforts in the marine habitat include MarBOL, CeDAMar, CMarZ, SHARK-BOL, etc. An overview on DNA barcoding of different marine groups ranging from the microbes to mammals is revealed. In conjugation with newer and faster techniques like high-throughput sequencing, DNA barcoding can serve as an effective modern tool in marine biodiversity assessment and conservation.     

A review and a framework for the integration of biodiversity monitoring at the habitat level

The monitoring of biodiversity at the level of habitats is becoming widespread in Europe and elsewhere as countries establish national habitat monitoring systems and various organisations initiate regional and local schemes. Parallel to this growth, it is increasingly important to address biodiversity changes on large spatial (e.g. continental) and temporal (e.g. decade-long) scales, which requires the integration of currently ongoing monitoring efforts. Here we review habitat monitoring and develop a framework for integrating data or activities across habitat monitoring schemes. We first identify three basic properties of monitoring activities: spatial aspect (explicitly spatial vs. non-spatial), documentation of spatial variation (field mapping vs. remote sensing) and coverage of habitats (all habitats or specific habitats in an area), and six classes of monitoring schemes based on these properties. Then we explore tasks essential for integrating schemes both within and across the major classes. Finally, we evaluate the need and potential for integration of currently existing schemes by drawing on data collected on European habitat monitoring in the EuMon project. Our results suggest a dire need for integration if we are to measure biodiversity changes across large spatial and temporal scales regarding the 2010 target and beyond. We also make recommendations for an integrated pan-European habitat monitoring scheme. Such a scheme should be based on remote sensing to record changes in land cover and habitat types over large scales, with complementary field mapping using unified methodology to provide ground truthing and to monitor small-scale changes, at least in habitat types of conservation importance.     

Comparing strategies to preserve evolutionary diversity

The likely future extinction of various species will result in a decline of two quantities: species richness and phylogenetic diversity (PD, or ‘evolutionary history’). Under a simple stochastic model of extinction, we can estimate the expected loss of these quantities under two conservation strategies: An ‘egalitarian’ approach, which reduces the extinction risk of all species, and a ‘targeted’ approach that concentrates conservation effort on the most endangered taxa. For two such strategies that are constrained to experience the same expected loss of species richness, we ask which strategy results in a greater expected loss of PD. Using mathematical analysis and simulation, we describe how the strategy (egalitarian versus targeted) that minimizes the expected loss of PD depends on the distribution of endangered status across the tips of the tree, and the interaction of this status with the branch lengths. For a particular data set consisting of a phylogenetic tree of 62 lemur species, with extinction risks estimated from the IUCN ‘Red List’, we show that both strategies are virtually equivalent, though randomizing these extinction risks across the tip taxa can cause either strategy to outperform the other. In the second part of the paper, we describe an algorithm to determine how extreme the loss of PD for a given decline in species richness can be. We illustrate the use of this algorithm on the lemur tree.     

Effects of different management regimes on aquatic macroinvertebrate diversity in Australian rice fields

The maintenance of invertebrate diversity within agricultural environments can enhance a number of agronomically important processes, such as nutrient cycling and biological pest control. However, few Australian studies have been undertaken which specifically address the effects of commercial management regimes on rice field biodiversity. In this study, we compared aquatic macroinvertebrate communities within Australian rice fields cultivated under three commercial management regimes: conventional-aerial (agrochemicals applied, aerially sown), conventional-drill (agrochemicals applied, directly drill-sown) and organic-drill (agrochemical-free, directly drill-sown). These comparisons were undertaken using a combination of community assessment approaches, including morphospecies richness, abundance, diversity and community composition. In general, greater biodiversity existed within macroinvertebrate communities that developed under organic management regimes than under conventional regimes (i.e., higher morphospecies richness and Shannon diversity). Although there were significant differences in several parameters across management regimes early in the rice-growing season, as the growing season progressed the invertebrate communities that developed in the different management regimes became more similar. Only community composition analyses showed significant differences late in the growing season, with functional differences across aquatic faunal assemblages suggested by increased predator abundance in communities sampled from the organic management regime. In order to improve biodiversity within these aquatic environments, management techniques need to be examined individually and the most disruptive processes identified. Alternative management procedures can then be developed that minimise biodiversity loss whilst still delivering required agronomic outcomes.     

Monitoring the Convention on Biological Diversity (CBD) framework using evaluation of effectiveness methods. The Italian case

Protected areas play an important role in the preservation and implementation of bold environmental agreements, among which the 20 Aichi Targets (Strategic Plan for Biodiversity 2011–2020, COP 10), with their focus on effective management systems supporting the conservation of biodiversity and eco-system services (Aichi Biodiversity Target 11). The aim of this paper is to illustrate the MEVAP (Monitoring and EValuation of Protected Areas) methodology, Italy's contribution to the topic of evaluating the effectiveness of protected areas within the international landscape (WDPA–IUCN, World Database on Protected Areas – Union for Conservation of Nature). The purpose of MEVAP is to provide a periodical review procedure as part of the process to improve the management of protected areas. Its starting point is the analysis of qualitative and quantitative data pertinent to the environmental, social and economic aspects of protected areas and to their governance.This paper illustrates the results obtained using the MEVAP method and its application to several clusters of Italian national parks. While highlighting the potential of this method, the document also proposes an initial assessment of the environmental, social and economical performance of protected areas and how performance is connected to its governance.Underpinning the study is the need to expand the use of evaluation practices and to spur scientific debate in the direction of widely spread adaptive management methods, with a view to optimising policies and management procedures and, therefore, achieving the protection targets that must be met by protected areas through their institutions.     

Environmental genomics, the big picture?

The enormous sequencing capabilities of our times might be reaching the point of overflowing the possibilities to analyse data and allow for a feedback on where to focus the available resources. We have now a foreseeable future in which most bacterial species will have an annotated genome. However, we know also that most prokaryotic diversity would not be included there. On the one hand, there is the problem of many groups not being easily amenable to culture and hence not represented in culture-centred microbial taxonomy. On the other hand, the gene pools present in one species can be orders of magnitude larger than the genome of one strain (selected for genome sequencing). Contrasting with eukaryotic genomes, the repertoire of genes present in one prokaryotic cell genome does not correlate stringently with its taxonomic identity. Hence gene catalogues from one environment might provide more meaningful information than the classical species catalogues. Metagenomics or microbial environmental genomics provide a different tool that gravitates around the habitat rather than the species. Such a tool could be just the right way to complement "organismal genomics". Its potential to advance our understanding of microbial ecology and prokaryotic diversity and evolution is discussed.     

Global diversity of crayfish (Astacidae, Cambaridae, and Parastacidae––Decapoda) in freshwater

The freshwater crayfishes are distributed across all but the Indian and Antarctic continents with centers of diversity in the southeastern Appalachian Mountains in the Northern Hemisphere and in south–east Australia in the Southern Hemisphere. There are currently over 640 described species of freshwater crayfishes with an average of 5–10 species still being described each year. Freshwater crayfishes can serve as keystone species in aquatic habitats, but a few species are also significantly invasive and can cause impressive damage to the fragile freshwater habitat. Crayfishes inhabit caves, burrows, streams, lakes and strong burrowers can even be found in terrestrial habitats where they have burrowed to the water table or where rainfall is sufficiently abundant to provide the needed moisture. The freshwater crayfishes, like the habitats in which they are encountered, are generally endangered to some degree and conservation efforts would do well to focus on them as key elements of the freshwater ecosystem. Guest editors: E. V. Balian, C. Lévêque, H. Segers & K. Martens Freshwater Animal Diversity Assessment     

Do multivariate analyses incorporating changes in pattern across taxonomic levels reveal anthropogenic stress in Mediterranean lagoons?

It is accepted that observed patterns in community structure change as analyses are carried out at higher taxonomic levels. Univariate analyses which incorporate higher taxonomic structure within assemblages have been shown to be informative. In this paper we suggest ways in which changes in multivariate relationships at higher taxonomic levels and associated with higher taxonomic/phylogenetic structure of the community may be incorporated into multivariate analyses, an aspect never occurred before in this type of analysis. Four approaches, namely: biodiversity MDS (bdMDS), number of taxa MDS (ntMDS), delta MDS (δMDS) and lambda MDS (λMDS), are proposed, and applied to theoretical data as well as to data collected from the literature on the Mediterranean lagoonal environment. Results show that these approaches have the capacity to distinguish severely impacted lagoons from naturally disturbed ones, although in practice the simplest method (ntMDS) was the most successful. Analyses based on the most abundant groups (polychaetes, molluscs, crustaceans) did not always match analyses based on the entire macrofauna, mirroring the performance of taxonomic distinctness indices in the Mediterranean lagoons. The important characteristics of the approaches introduced, as well as potential criticisms are provided. Application of these techniques on smaller scales and to other habitats, is suggested prior to their wider use in the region.     

A new family of Fisher-curves estimates Fisher's alpha more accurately

Fisher's alpha is a satisfactory scale-independent indicator of biodiversity. However, alpha may be underestimated in communities in which the spatial arrangement of individuals is strongly clustered, or in which the total number of species does not tend to infinity. We have extended Fisher's curve to allow for an accurate calibration of Fisher's alpha in such communities. In spite of its good performance, the use of this extended curve is complicated by its optimization procedure. Therefore, we have simulated the extended Fisher curve by modifying the smooth expolinear curve, using three ecologically meaningful parameters only, i.e. Fisher's alpha, a coefficient describing the effects of clustering and the maximum number of species. The resulting equations successfully describe species-individual relationships from both spatial and temporal observations on both plant and animal communities. This family of equations combines three advantages: Fisher's alpha can be quantified more accurately, the number of estimated parameters is flexible and can be kept to a minimum, while all parameters can legitimately be compared across sites.     

Integrating ongoing biodiversity monitoring: potential benefits and methods

Halting the loss of biodiversity comes along with the need to quantify biodiversity composition and dynamics at large spatial and temporal scales. Highly standardized, international monitoring networks would be ideal, but they do not exist yet. If we are to assess changes in biodiversity now, combining output available from ongoing monitoring initiatives is the only option. However, integration of biodiversity information across schemes is still very poorly developed. In this paper, we outline practical issues to be considered when planning to combine existing monitoring information. First, we provide an overview of avenues for integration along the four dimensions that characterize a monitoring design: sample size, biological coverage, spatial coverage and temporal coverage. We also emphasize that complementarity in monitoring targets across schemes enables to describe complex processes of biodiversity dynamics, e.g. through relating species traits to the impacts of environmental changes. Second, we review some methods to overcome differences in designs among monitoring schemes, such as site selection, post-stratification and measurement error. Finally, we point out some commonly used statistical methods that are at hand for combining data or parameter estimates. We especially emphasize the possible levels of data integration (raw data, parameter estimates, or effect size estimates), and the largely under-exploited potential of meta-analysis methods and weighted analyses. This contribution aims to bolster the practice and use of integration of ongoing monitoring initiatives for biodiversity assessment.     

Distribution and ecology of dictyostelids in China

Dictyostelid cellular slime molds are a ubiquitous component of most soils, where they feed upon bacteria and other microbes and thus play an essential role in the soil ecosystem. Herein we review the available literature on dictyostelid cellular slime molds in China, especially their diversity and ecology. The patterns of distribution for these organisms in relation to the different habitats with which they are associated are analyzed and discussed. In addition, the assemblages of dictyostelids reported from China and the United States were compared. The CC value obtained (0.48) indicates that China and the United States are perhaps less similar than might be expected. Our data point out the need for further studies to characterize more completely the assemblages of dictyostelids associated with particular vegetation types or particular regions throughout the world.     

Living on the edge: parasite taxonomy in Australia

The way in which the huge Australian parasite fauna is described (discovery and naming) is the subject of this address. The approach to the task has never been well-organised so that a few groups of parasites are now relatively well-known because of the efforts of small groups of workers who have made sustained efforts in these groups, but equally some host-parasite systems have been almost completely ignored in that no worker has ever given them sustained attention. A high proportion of Australian parasites have been described by international workers. The sustaining of interest in a group of parasites over a long period is the key to real progress being made. The nature of the organisation of Australian science presently means that few positions are available for parasite taxonomists and funding for taxonomic research is scarce. Thus, parasite taxonomy (like the taxonomy of many groups of Australian plants and animals) can only be considered to be in crisis.