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Highlights
  • •Open source software for comprehensive HDX-MS data analysis.
  • •Automatic back-exchange correction options.
  • •Rigorous statistical analysis of the significance of uptake differences.
  • •High quality visualization tools.
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Highlights
  • •Method for the analysis of response curves from thermal proteome profiling (TPP).
  • •NPARC uses nonparametric statistics and provides false discovery-rate (FDR) control.
  • •Increased proteome coverage and sensitivity to identify drug-binding proteins.
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Highlights
  • •Automated analysis of protein complexes in proteomic experiments.
  • •Quantitative measurement of the coordinated changes in protein complex components.
  • •Interactive visualizations for exploratory analysis of proteomic results.
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Highlights
  • •Comprehensive analysis of inter-individual variation of normal urinary proteome.
  • •Significant gender differences were observed.
  • •Proteins increased in female urine are enriched in immunological pathways.
  • •Estimated reference intervals of proteins as the baseline for biomarker discovery.
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