Assessing above and belowground recovery from ammonium sulfate addition and wildfire in a lowland heath: mycorrhizal fungi as potential indicators

Atmospheric pollution containing soil-nitrifying ammonium sulfate ((NH₄)₂SO₄) affects semi-natural ecosystems worldwide. Long-term additions of (NH₄)₂SO₄ to nitrogen (N)-limited habitats, including heathlands, increase climate stress affecting recovery from wildfires. Although heathland vegetation largely depends on ericoid mycorrhizal fungi (ErM) to access soil N, we lack detailed understanding of how prolonged exposure to (NH₄)₂SO₄ may alter ErM community composition and host plants' reliance on fungal partners following wildfire and affect recovery. Simulation of atmospheric pollution ((NH₄)₂SO₄) occurred bi-weekly for 5 years after a 2006 wildfire in a UK heathland. Ten years after treatments ceased, we measured vegetation structure, lichen and lichen photobiont composition, soil characteristics, ErM colonization, ErM diversity in roots and soil, and assessed ErM potential as novel recovery indicators. Heather height and density, and moss groundcover, were greater in N-enriched plots. Lichen community indices showed significant treatment effects, but without differences in photobionts. Soil pH and Mg were significantly lower in treated plots while soil cation exchange capacity was significantly higher. There were no detectable differences in ErM composition and keystone ErM taxa between control and treated plots. Soil carbon stock measures were variable. Our results indicate atmospheric pollution following fire can have significant lingering effects above- and belowground. ErM diversity and root colonization were not assessed in the original N-addition experiment; we advocate for their inclusion in future studies as an integral part of the recovery assessment toolkit. We show that mycorrhizal fungi diversity is a viable ecological tool and summarize key steps for ErM identification.     

Long‐term warming and litter addition affects nitrogen fixation in a subarctic heath

Nitrogen (N) availability is the main constraint on primary production in most Arctic ecosystems, with microbial fixation of atmospheric N as the primary source of N input. However, there are only few reports on N fixation rates in relation to climate change in the Arctic. In order to investigate the effects of anticipated global climate change on N fixation rates in a subarctic moist heath, a field experiment was carried out in Northern Sweden. Warming was induced by plastic tents, and in order to simulate the effects of future increased tree cover, birch litter was added each fall for 9 years before the measurements. We analyzed N fixation rates on both whole‐ecosystem level and specifically on two moss species: Sphagnum warnstorfii and Hylocomium splendens. The whole‐ecosystem N fixation of the warmed plots almost tripled compared with the control plots. However, in the Sphagnum and Hylocomium mosses we observed either no change or occasionally even a decrease in N fixation after warming. Both measured on whole‐ecosystem level and on the two moss species separately, litter addition increased N fixation rates. The results suggest that warming will lead to a general increased ecosystem N input, but also that the N fixation associated to some moss species is likely to decrease. Hence, this study shows that the scale of measurements is crucial when investigating on ecosystem responses to manipulations.     

Long‐term antagonistic effect of increased precipitation and nitrogen addition on soil respiration in a semiarid steppe

Changes in water and nitrogen (N) availability due to climate change and atmospheric N deposition could have significant effects on soil respiration, a major pathway of carbon (C) loss from terrestrial ecosystems. A manipulative experiment simulating increased precipitation and atmospheric N deposition has been conducted for 9 years (2005–2013) in a semiarid grassland in Mongolian Plateau, China. Increased precipitation and N addition interactively affect soil respiration through the 9 years. The interactions demonstrated that N addition weakened the precipitation‐induced stimulation of soil respiration, whereas increased precipitation exacerbated the negative impacts of N addition. The main effects of increased precipitation and N addition treatment on soil respiration were 15.8% stimulated and 14.2% suppressed, respectively. Moreover, a declining pattern and 2‐year oscillation were observed for soil respiration response to N addition under increased precipitation. The dependence of soil respiration upon gross primary productivity and soil moisture, but not soil temperature, suggests that resources C substrate supply and water availability are more important than temperature in regulating interannual variations of soil C release in semiarid grassland ecosystems. The findings indicate that atmospheric N deposition may have the potential to mitigate soil C loss induced by increased precipitation, and highlight that long‐term and multi‐factor global change studies are critical for predicting the general patterns of terrestrial C cycling in response to global change in the future.     

Long‐term effects of climate change on carbon flows through benthic secondary production in small lakes

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Long‐term amelioration of acidity accelerates decomposition in headwater streams

The secondary production of culturally acidified streams is low, with a few species of generalist detritivores dominating invertebrate assemblages, while decomposition processes are impaired. In a series of lowland headwater streams in southern England, we measured the rate of cellulolytic decomposition and compared it with values measured three decades ago, when anthropogenic acidification was at its peak. We hypothesized that, if acidity has indeed ameliorated, the rate of decomposition will have accelerated, thus potentially supporting greater secondary production and the longer food chains that have been observed in some well‐studied recovering freshwater systems. We used cellulose Shirley test cloth as a standardized bioassay to measure the rate of cellulolytic decomposition, via loss in tensile strength, for 31 streams in the Ashdown Forest over 7 days in summer 2011 and 49 days in winter 2012. We compared this with data from an otherwise identical study conducted in 1978 and 1979. In a secondary study, we determined whether decomposition followed a linear or logarithmic decay and, as Shirley cloth is no longer available, we tested an alternative in the form of readily available calico. Overall mean pH had increased markedly over the 32 years between the studies (from 6.0 to 6.7). In both the previous and contemporary studies, the relationship between decomposition and pH was strongest in winter, when pH reaches a seasonal minimum. As in the late 1970s, there was no relationship in 2011/2012 between pH and decay rate in summer. As postulated, decomposition in winter was significantly faster in 2011/2012 than in 1978/1979, with an average increase in decay rate of 18.1%. Recovery from acidification, due to decreased acidifying emissions and deposition, has led to an increase in the rate of cellulolytic decomposition. This response in a critical ecosystem process offers a potential explanation of one aspect of the limited biological recovery that has been observed so far, an increase in larger bodied predators including fish, which in turn leads to an increase in the length of food chains.     

Long‐term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA

Assessing the extent to which changes in lacustrine biodiversity are affected by anthropogenic or climatic forces requires extensive palaeolimnological data. We used high‐throughput sequencing to generate time‐series data encompassing over 2200 years of microbial eukaryotes (protists and Fungi) diversity changes from the sedimentary DNA record of two lakes (Lake Bourget in French Alps and Lake Igaliku in Greenland). From 176 samples, we sequenced a large diversity of microbial eukaryotes, with a total 16 386 operational taxonomic units distributed within 50 phylogenetic groups. Thus, microbial groups, such as Chlorophyta, Dinophyceae, Haptophyceae and Ciliophora, that were not previously considered in lacustrine sediment record analyses appeared to be potential biological markers of trophic status changes. Our data suggest that shifts in relative abundance of extant species, including shifts between rare and abundant taxa, drive ecosystem responses to local and global environmental changes. Community structure shift events were concomitant with major climate variations (more particularly in Lake Igaliku). However, this study shows that the impacts of climatic fluctuations may be overpassed by the high‐magnitude eutrophication impacts, as observed in the eutrophicated Lake Bourget. Overall, our data show that DNA preserved in sediment constitutes a precious archive of information on past biodiversity changes.     

The meagre future of benthic fauna in a coastal sea—Benthic responses to recovery from eutrophication in a changing climate

Nutrient loading and climate change affect coastal ecosystems worldwide. Unravelling the combined effects of these pressures on benthic macrofauna is essential for understanding the future functioning of coastal ecosystems, as it is an important component linking the benthic and pelagic realms. In this study, we extended an existing model of benthic macrofauna coupled with a physical–biogeochemical model of the Baltic Sea to study the combined effects of changing nutrient loads and climate on biomass and metabolism of benthic macrofauna historically and in scenarios for the future. Based on a statistical comparison with a large validation dataset of measured biomasses, the model showed good or reasonable performance across the different basins and depth strata in the model area. In scenarios with decreasing nutrient loads according to the Baltic Sea Action Plan but also with continued recent loads (mean loads 2012–2014), overall macrofaunal biomass and carbon processing were projected to decrease significantly by the end of the century despite improved oxygen conditions at the seafloor. Climate change led to intensified pelagic recycling of primary production and reduced export of particulate organic carbon to the seafloor with negative effects on macrofaunal biomass. In the high nutrient load scenario, representing the highest recorded historical loads, climate change counteracted the effects of increased productivity leading to a hyperbolic response: biomass and carbon processing increased up to mid‐21st century but then decreased, giving almost no net change by the end of the 21st century compared to present. The study shows that benthic responses to environmental change are nonlinear and partly decoupled from pelagic responses and indicates that benthic–pelagic coupling might be weaker in a warmer and less eutrophic sea.     

Long‐term monitoring of an amphibian community after a climate change‐ and infectious disease‐driven species extirpation

Infectious disease and climate change are considered major threats to biodiversity and act as drivers behind the global amphibian decline. This is, to a large extent, based on short‐term studies that are designed to detect the immediate and strongest biodiversity responses to a threatening process. What few long‐term studies are available, although typically focused on single species, report outcomes that often diverge significantly from the short‐term species responses. Here, we report the results of an 18‐year survey of an amphibian community exposed to both climate warming and the emergence of lethal chytridiomycosis. Our study shows that the impacts of infectious disease are ongoing but restricted to two out of nine species that form the community, despite the fact all species can become infected with the fungus. Climate warming appears to be affecting four out of the nine species, but the response of three of these is an increase in abundance. Our study supports a decreasing role of infectious disease on the community, and an increasing and currently positive effect of climate warming. We caution that if the warming trends continue, the net positive effect will turn negative as amphibian breeding habitat becomes unavailable as water bodies dry, a pattern that already may be underway.     

Native and exotic plant cover vary inversely along a climate gradient 11 years following stand‐replacing wildfire in a dry coniferous forest,Oregon, USA

Community re‐assembly following future disturbances will often occur under warmer and more moisture‐limited conditions than when current communities assembled. Because the establishment stage is regularly the most sensitive to climate and competition, the trajectory of recovery from disturbance in a changing environment is uncertain, but has important consequences for future ecosystem functioning. To better understand how ongoing warming and rising moisture limitation may affect recovery, we studied native and exotic plant composition 11 years following complete stand‐replacing wildfire in a dry coniferous forest spanning a large gradient in climatic moisture deficit (CMD) from warm and dry low elevation sites to relatively cool and moist higher elevations sites. We then projected future precipitation, temperature and CMD at our study locations for four scenarios selected to encompass a broad range of possible future conditions for the region. Native perennials dominated relatively cool and moist sites 11 years after wildfire, but were very sparse at the warmest and driest (high CMD) sites, particularly when combined with high topographic sun exposure. In contrast, exotic species (primarily annual grasses) were dominant or co‐dominant at the warmest and driest sites, especially with high topographic sun exposure. All future scenarios projected increasing temperature and CMD in coming decades (e.g., from 4.5% to 29.5% higher CMD by the 2080's compared to the 1971–2000 average), even in scenarios where growing season (May‐September) precipitation increased. These results suggest increasing temperatures and moisture limitation could facilitate longer term (over a decade) transitions toward exotic‐dominated communities after severe wildfire when a suitable exotic seed source is present.     

Reduction of ecosystem productivity and respiration during the European summer 2003 climate anomaly: a joint flux tower, remote sensing and modelling analysis

The European CARBOEUROPE/FLUXNET monitoring sites, spatial remote sensing observations via the EOS‐MODIS sensor and ecosystem modelling provide independent and complementary views on the effect of the 2003 heatwave on the European biosphere's productivity and carbon balance. In our analysis, these data streams consistently demonstrate a strong negative anomaly of the primary productivity during the summer of 2003. FLUXNET eddy‐covariance data indicate that the drop in productivity was not primarily caused by high temperatures (‘heat stress’) but rather by limitation of water (drought stress) and that, contrary to the classical expectation about a heat wave, not only gross primary productivity but also ecosystem respiration declined by up to more than to 80 gC m⁻² month⁻¹. Anomalies of carbon and water fluxes were strongly correlated. While there are large between‐site differences in water‐use efficiency (WUE, 1–6 kg C kg⁻¹ H₂O) here defined as gross carbon uptake divided by evapotranspiration (WUE=GPP/ET), the year‐to‐year changes in WUE were small (<1 g kg⁻¹) and quite similar for most sites (i.e. WUE decreased during the year of the heatwave). Remote sensing data from MODIS and AVHRR both indicate a strong negative anomaly of the fraction of absorbed photosynthetically active radiation in summer 2003, at more than five standard deviations of the previous years. The spatial differentiation of this anomaly follows climatic and land‐use patterns: Largest anomalies occur in the centre of the meteorological anomaly (central Western Europe) and in areas dominated by crops or grassland. A preliminary model intercomparison along a gradient from data‐oriented models to process‐oriented models indicates that all approaches are similarly describing the spatial pattern of ecosystem sensitivity to the climatic 2003 event with major exceptions in the Alps and parts of Eastern Europe, but differed with respect to their interannual variability.     

Structural and functional responses of plant communities to climate change‐mediated alterations in the hydrology of riparian areas in temperate Europe

The hydrology of riparian areas changes rapidly these years because of climate change‐mediated alterations in precipitation patterns. In this study, we used a large‐scale in situ experimental approach to explore effects of drought and flooding on plant taxonomic diversity and functional trait composition in riparian areas in temperate Europe. We found significant effects of flooding and drought in all study areas, the effects being most pronounced under flooded conditions. In near‐stream areas, taxonomic diversity initially declined in response to both drought and flooding (although not significantly so in all years) and remained stable under drought conditions, whereas the decline continued under flooded conditions. For most traits, we found clear indications that the functional diversity also declined under flooded conditions, particularly in near‐stream areas, indicating that fewer strategies succeeded under flooded conditions. Consistent changes in community mean trait values were also identified, but fewer than expected. This can have several, not mutually exclusive, explanations. First, different adaptive strategies may coexist in a community. Second, intraspecific variability was not considered for any of the traits. For example, many species can elongate shoots and petioles that enable them to survive shallow, prolonged flooding but such abilities will not be captured when applying mean trait values. Third, we only followed the communities for 3 years. Flooding excludes species intolerant of the altered hydrology, whereas the establishment of new species relies on time‐dependent processes, for instance the dispersal and establishment of species within the areas. We expect that altered precipitation patterns will have profound consequences for riparian vegetation in temperate Europe. Riparian areas will experience loss of taxonomic and functional diversity and, over time, possibly also alterations in community trait responses that may have cascading effects on ecosystem functioning.     

Life history of the freshwater mussel Unio tumidiformis (Bivalvia: Unionidae) in a temporary Mediterranean‐type stream

Mediterranean‐type streams are characterized by great seasonal and annual variation in flow. We studied the biology of the freshwater mussel Unio tumidiformis in such a stream, the Vascão River in southern Portugal, during a period of great interannual variation in hydrology. We studied growth patterns of the mussels between 2002–2008, and the reproductive cycle between 2005–2006. Life‐history parameters were calculated and related to environmental variables and fish community patterns. Mark–recapture growth data confirmed that observed annuli were formed annually and are therefore reliable for use in growth studies of U. tumidiformis. The von Bertalanffy growth constant K and the asymptotic length L_∞ were negatively correlated. K varied between 0.20 and 0.58 and was positively correlated with factors related to eutrophication. The maximum observed age was 7 years, and the maximum observed length was 52 mm. There was no apparent sexual dimorphism, and sexual maturity was reached at the age of 2 years. Fecundity was low, between 1500–15000 glochidia per female, and positively correlated with body length. Only one annual gametogenic cycle was identified, leading to a short‐term reproductive period in spring (tachyticity). The reproductive cycle was similar in the two years sampled, between which hydrology and water quality differed greatly. The presence of glochidia was synchronized with the period when the proportion of fish hosts (genus Squalius) was higher in the fish community. Unio tumidiformis seems to be well adapted to the natural variability in flow in temporary Mediterranean‐type streams. Modifications of the natural flow regime caused by climate change or increased water exploitation may lead to rapid declines in mussel populations.     

Long‐term deepened snow promotes tundra evergreen shrub growth and summertime ecosystem net CO2 gain but reduces soil carbon and nutrient pools

Arctic climate warming will be primarily during winter, resulting in increased snowfall in many regions. Previous tundra research on the impacts of deepened snow has generally been of short duration. Here, we report relatively long‐term (7–9 years) effects of experimentally deepened snow on plant community structure, net ecosystem CO₂ exchange (NEE), and soil biogeochemistry in Canadian Low Arctic mesic shrub tundra. The snowfence treatment enhanced snow depth from 0.3 to ~1 m, increasing winter soil temperatures by ~3°C, but with no effect on summer soil temperature, moisture, or thaw depth. Nevertheless, shoot biomass of the evergreen shrub Rhododendron subarcticum was near‐doubled by the snowfences, leading to a 52% increase in aboveground vascular plant biomass. Additionally, summertime NEE rates, measured in collars containing similar plant biomass across treatments, were consistently reduced ~30% in the snowfenced plots due to decreased ecosystem respiration rather than increased gross photosynthesis. Phosphate in the organic soil layer (0–10 cm depth) and nitrate in the mineral soil layer (15–25 cm depth) were substantially reduced within the snowfences (47–70 and 43%–73% reductions, respectively, across sampling times). Finally, the snowfences tended (p = .08) to reduce mineral soil layer C% by 40%, but with considerable within‐ and among plot variation due to cryoturbation across the landscape. These results indicate that enhanced snow accumulation is likely to further increase dominance of R. subarcticum in its favored locations, and reduce summertime respiration and soil biogeochemical pools. Since evergreens are relatively slow growing and of low stature, their increased dominance may constrain vegetation‐related feedbacks to climate change. We found no evidence that deepened snow promoted deciduous shrub growth in mesic tundra, and conclude that the relatively strong R. subarcticum response to snow accumulation may explain the extensive spatial variability in observed circumpolar patterns of evergreen and deciduous shrub growth over the past 30 years.     

Conserving species‐rich predator assemblages strengthens natural pest control in a climate warming context

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Long‐term evolutionary and ecological responses of calcifying phytoplankton to changes in atmospheric CO2

Calcifying phytoplankton play an important role in marine ecosystems and global biogeochemical cycles, affecting the transfer of both organic and inorganic carbon from the surface to the deep ocean. Coccolithophores are the most prominent members of this group, being well adapted to low‐nutrients environments (e.g., subtropical gyres). Despite urgent concerns, their response to rising atmospheric carbon dioxide levels (pCO₂) and ocean acidification is still poorly understood, and short‐term experiments may not extrapolate into longer‐term climatic adaptation. Current atmospheric pCO₂ (~390 ppmv) is unprecedented since at least 3 million years ago (Ma), and levels projected for the next century were last seen more than 34 Ma. Hence, a deep‐time perspective is needed to understand the long‐term effects of high pCO₂ on the biosphere. Here we combine a comprehensive fossil data set on coccolithophore cell size with a novel measure of ecological prominence: Summed Common Species Occurrence Rate (SCOR). The SCOR is decoupled from species richness, and captures changes in the extent to which coccolithophores were common and widespread, based on global occurrences in deep‐sea sediments. The size and SCOR records are compared to state‐of‐the‐art data on climatic and environmental changes from 50 to 5 Ma. We advance beyond simple correlations and trends to quantify the relative strength and directionality of information transfer among these records. Coccolithophores were globally more common and widespread, larger, and more heavily calcified in the pre‐34 Ma greenhouse world, and declined along with pCO₂ during the Oligocene (34–23 Ma). Our results suggest that atmospheric pCO₂ has exerted an important long‐term control on coccolithophores, directly through its availability for photosynthesis or indirectly via weathering supply of resources for growth and calcification.     

Long‐term terrestrial carbon dynamics in the Midwestern United States during 1850–2015: Roles of land use and cover change and agricultural management

To meet the increasing food and biofuel demand, the Midwestern United States has become one of the most intensively human‐disturbed hotspots, characterized by widespread cropland expansion and various management practices. However, the role of human activities in the carbon (C) cycling across managed landscape remains far from certain. In this study, based on state‐ and national census, field experiments, and model simulation, we comprehensively examined long‐term carbon storage change in response to land use and cover change (LUCC) and agricultural management in the Midwest from 1850 to 2015. We also quantified estimation uncertainties related to key parameter values. Model estimation showed LUCC led to a reduction of 1.35 Pg (with a range of 1.3–1.4 Pg) in vegetation C pool of the Midwest, yet agricultural management barely affected vegetation C change. In comparison, LUCC reduced SOC by 4.5 Pg (3.1 to 6.2 Pg), while agricultural management practices increased SOC stock by 0.9 Pg. Moreover, we found 45% of the study area was characterized by continuously decreasing SOC caused by LUCC, and SOC in 13% and 31% of the area was fully and partially recovered, respectively, since 1850. Agricultural management was estimated to increase the area of full recovery and partial recovery by 8.5% and 1.1%. Our results imply that LUCC plays an essential role in regional C balance, and more importantly, sustainable land management can be beneficial for strengthening C sequestration of the agroecosystems in the Midwestern US, which may serve as an important contributor to C sinks in the US.     

Influence of simulated climate change and eutrophication on three‐spined stickleback populations: a large scale mesocosm experiment

1. Shallow lakes and their ectothermic inhabitants are particularly vulnerable to the effects of climatic warming. These impacts are likely to depend on nutrient loading, especially if the combination of warming and eutrophication leads to severe hypoxia. 2. To investigate effects of realistic warming and nutrient loading on a fish species with high tolerance of warming and hypoxia, we observed population changes and timing of reproduction of three‐spined sticklebacks in 24 outdoor shallow freshwater ecosystems with combinations of temperature (ambient and ambient +4 °C) and three nutrient treatments over 16 months. 3. Warming reduced stickleback population biomass by 60% (population size by 76%) and nutrient‐addition reduced biomass by about 80% (population size 95%). Nutrients and warming together resulted in extinction of the stickleback populations. These losses were mainly attributed to the increased likelihood of severe hypoxia in heated and nutrient‐addition mesocosms. 4. Warming of nutrient‐rich waters can thus have dire consequences for freshwater ectotherm populations. The loss even of a hardy fish suggests a precarious future for many less tolerant species in such eutrophic systems under current climate change predictions.     

Long‐term declines in winter body mass of tits throughout Britain and Ireland correlate with climate change

The optimum body mass of passerine birds typically represents a trade‐off between starvation risk, which promotes fat gain, and predation pressure, which promotes fat loss to maintain maneuvrability. Changes in ecological factors that affect either of these variables will therefore change the optimum body masses of populations of passerine birds. This study sought to identify and quantify the effects of changing temperatures and predation pressures on the body masses and wing lengths of populations of passerine birds throughout Britain and Ireland over the last 50 years. We analyzed over 900,000 individual measurements of body mass and wing length of blue tits Cyanistes caeruleus, coal tits Periparus ater, and great tits Parus major collected by licenced bird ringers throughout Britain and Ireland from 1965 to 2017 and correlated these with publicly available temperature data and published, UK‐wide data on the abundance of a key predator, the sparrowhawk Accipiter nisus. We found highly significant, long‐term, UK‐wide decreases in winter body masses of adults and juveniles of all three species. We also found highly significant negative correlations between winter body mass and winter temperature, and between winter body mass and sparrowhawk abundance. Independent of these effects, body mass further correlated negatively with calendar year, suggesting that less well understood dynamic factors, such as supplementary feeding levels, may play a major role in determining population optimum body masses. Wing lengths of these birds also decreased, suggesting a hitherto unobserved large‐scale evolutionary adjustment of wing loading to the lower body mass. These findings provide crucial evidence of the ways in which species are adapting to climate change and other anthropogenic factors throughout Britain and Ireland. Such processes are likely to have widespread implications as the equilibria controlling evolutionary optima in species worldwide are upset by rapid, anthropogenic ecological changes.