Polymorphic microsatellite loci for studies of the Ozark hellbender (Cryptobranchus alleganiensis bishopi)

The hellbender is the only North American member of the aquatic salamander family Cryptobranchidae and is a species of conservation concern across its range. We developed eight polymorphic microsatellite loci for hellbenders using a magnetic bead enrichment protocol and a PCR-based detection technique. Allelic diversity averaged 4.0 (±1.8 SD) per locus and heterozygosity averaged 0.56 (±0.30 SD). The hellbender is rare and difficult to study due to its cryptic life history. These loci will provide a valuable resource for population studies, which could inform future conservation and management decisions.     

No short‐term change in avian assemblage following removal of Yellow‐throated Miner (Manorina flavigula) colonies

The overabundance of Yellow‐throated Miner (Manorina flavigula) has been shown to negatively affect the abundance and richness of small birds in areas they occupy, leading to homogenization of the avifauna across the fragmented landscape. In this study, we took advantage of a planned management cull to ask the question, does the removal of Yellow‐throated Miner colonies cause an immediate change in avian species richness and abundance? This cull was undertaken around the Bronzewing Flora and Fauna Reserve (north‐western Victoria, Australia) in order to protect a resident population of endangered Black‐eared Miner (M. melanotis) from hybridization. We conducted avian surveys along roadsides surrounding the reserve at Yellow‐throated Miner colonies (n = 6), control sites with no miners (n = 7), and where colonies were removed (n = 3). We found that the cull was followed by only a very modest increase in the species richness and abundance of small birds, with no significant effects on avian assemblage overall. This result contrasts with far more dramatic increases following culls of other species of miner. Sites where miners were removed were not depauperate of other species prior to the cull, which could have been due to a combination of proximity to refuge for small birds in a neighbouring reserve or the low numbers of miners that made up each culled colony. This study highlights that assumed effects of a management action may be highly dependent upon spatial and temporal context.     

Microhabitat suitability as a tool to improve the success rate of a translocation or reintroduction,case‐study of the bullhead (Cottus perifretum) in Flanders,Belgium

Microhabitat suitability models are useful tools to enhance the reintroduction success of fish. Since 2008, a translocation and reintroduction program has been carried out in Flanders to prevent substantial loss of genetic variability in the Cottus perifretum (bullhead) population, and to meet the goals set by the Habitat Directive. To this end, habitat suitability of potential headstreams was assessed on a macrohabitat and microhabitat scale prior to the reintroduction. On a macrohabitat scale, water quality, habitat structure, food availability, and fish community were screened. Based on microhabitat models for bullhead in the summer period, microhabitat suitability was assessed in headstreams where macrohabitat characteristics showed a high potential for success. Both macro‐ and microhabitat assessment showed that reintroduction of bullheads in the Nellebeek, Bruelbeek, and Mollendaalbeek would most likely lead to self‐sustaining populations. For the Sint‐Annabeek, the microhabitat suitability model, considering depth and stream velocity, estimates that 7.5–9.5% of the headstream is suitable for bullhead. However, when substratum is taken into account, the microhabitat suitability index shows that only 4.3–5.8% of the brook is suitable. The current habitat quality and quantity in the Sint‐Annabeek is estimated to support a mean total population of 812 bullheads. However, the microhabitat suitability can be substantially improved by the artificial deposition of medium‐sized gravel (5–50 mm) and large gravel (50–100 mm). By doing so, the mean estimated population size could increase up to 1,330 individuals. Our results show that habitat improvement is necessary prior to the reintroduction of bullheads in the Sint‐Annabeek.     

Habitat selection by the Superb Lyrebird (Menura novaehollandiae), an iconic ecosystem engineer in forests of south‐eastern Australia

Landscape heterogeneity, from both natural and anthropogenic causes, fundamentally influence the distribution of species. Conservation management requires an understanding of how species respond to heterogeneity at different spatial scales and whether differences may occur between demographic components of a species population. We examined the spatial pattern of activity of the superb lyrebird (Menura novaehollandiae), an iconic forest species of south‐eastern Australia, in the Dandenong Ranges National Park, Victoria. Specifically, we quantified at landscape and local scales, the factors that influence nest site location and foraging activity of lyrebirds. Compared with randomly located sites, nest sites were more likely to occur in wet forest or rainforest close to creek lines; where there were deep litter and complex vegetation in the mid (1.5–2 m) and high (>2 m) strata. Foraging by lyrebirds was more likely to occur in wet forest and rainforest, with increasing distance from creeks; at sites where low vegetative cover (<30 cm) was sparse and the ground layer open. Thus, lyrebirds respond to different cues for different activities (nest sites and foraging), using different resources in the landscape. These results highlight the importance of (i) knowing the range of resources, at both landscape and local scales, required by a species to ensure its persistence and (ii) adopting a landscape approach for conservation planning that incorporates the heterogeneity of the ecosystem, especially that provided by landscape components that may be limited in area but disproportionately valuable for providing habitat resources.     

Rab3a interacting molecule (RIM) and the tethering of pre‐synaptic transmitter release site‐associated CaV2.2 calcium channels

Biochemical and physiological evidence suggest that pre‐synaptic calcium channels are attached to the transmitter release site within the active zone by a molecular tether. A recent study has proposed that ‘Rab3a Interacting Molecule’ (RIM) serves as the tether for CaV2.1 channels in mouse brain, based in part on biochemical co‐immunoprecipitation (co‐IP) using a monoclonal antibody, mRIM. We previously argued against this idea for CaV2.2 calcium channel at chick synapses based on experiments using a different anti‐RIM antibody, pRIM1,2: while staining for the two proteins co‐localized and co‐varied at the transmitter release face, consistent with an association, they failed to co‐IP from a synaptosome membrane lysate. RIM is, however, a family of proteins and we tested the possibility that the mRIM antibody used in the more recent study identifies a particular channel‐tethering variant. We find that co‐immunostaining with mRIM and anti‐CaV2.2 antibody neither co‐localized nor co‐varied at the transmitter release face and the two proteins did not co‐IP, arguing against a common protein complex and a key CaV2.2 scaffolding role for RIM at the active zone. The differing results might be reconciled, however, in a model where a RIM family member contributes to a protein bridge that anchors the pre‐fusion secretory vesicle to the calcium channel protein complex.     

Determinants of successful establishment and post‐translocation dispersal of a new population of the critically endangered St. Croix ground lizard (Ameiva polops)

Translocation to areas free of exotic predators, habitat degradation, or disease may be the most viable restoration option for many endangered species. We report on a successful translocation of the critically endangered St. Croix ground lizard, Ameiva polops, extirpated from St. Croix, U.S. Virgin Islands, Caribbean, by predation from introduced mongooses (Herpestes auropunctatus). We translocated 57 adult A. polops from Green Cay to Buck Island in May 2008. We placed 4 females and 3 males each in eight, 100 m², enclosures on Buck Island for 71 days, then the enclosures were opened. During the enclosure period, 20 individuals were identified and 32 others were seen. The average number sighted per survey was only 5.28 (range = 2–10). One hatchling was sighted in an enclosure, indicating a translocated female successfully nested. Body condition of the translocated individuals increased significantly by the end of the enclosure period. Population monitoring surveys at 61 sites across Buck Island showed that 5 years after the initial translocation in June 2013, the new population had grown to an estimated 1,473 individuals and occupied 58.9% of the island. We attribute eradication of mongoose, life history of the species, large propagule size, condition of habitat, soft‐release, use of adults, interagency collaboration, and systematic assessment as primary factors that facilitated this successful translocation. Our findings provide meaningful insights on factors that enhance the potential for successful translocations, and point to new strategies aimed at restoring populations of endangered reptiles in their native ranges.     

Spatio‐temporal gradients in food supply help explain the short‐term colonisation dynamics of the critically endangered central rock‐rat (Zyzomys pedunculatus)

Currently, the impact of introduced predators on small mammal population decline is a focal research direction in the Australian desert literature. In all likelihood though, single‐factor explanation of population dynamics is inadequate, leaving gaps in our knowledge of the multitude of potential influences on small mammal abundance and occupancy patterns in time and space. Here, we investigated floristic gradients across four potential refuge sites of the central rock‐rat, Zyzomys pedunculatus, a granivore rodent (50–120 g) that is endemic to central Australia and is categorised as critically endangered. The study took place in Tjoritja/West MacDonnell National Park in the MacDonnell Ranges bioregion. Floristic sampling was allocated across the four sites, the locations of which were predetermined by an established monitoring and management programme for the central rock‐rat. Our aim was to examine the relationship between environmental gradients and floristic composition across the four sites, and thereby test the extent to which the patterns of food type and food availability can inform central rock‐rat spatio‐temporal dynamics. We found high site‐scale floristic patterning that related foremost to elevation and then to antecedent rainfall and time‐since‐fire and fire‐severity effects. To interpret these results, we applied the principles of refuge theory and we described a gradient from core refuge habitat to intermittent and then marginal habitat within the current central rock‐rat stronghold area. Overall, our results implied a strong floristic basis to central rock‐rat site occurrence, and they thus compel us to take explicit account of spatial (elevation) and temporal (rainfall–productivity and fire‐disturbance) influences on the food axis of potential refuge sites of this critically endangered species.     

Long‐term abundance trends of the northern form of the short‐finned pilot whale (Globicephala macrorhynchus) along the Pacific coast of Japan

The abundance of the northern form of the short‐finned pilot whale, Globicephala macrorhynchus, in the Pacific waters of northern Japan was estimated from a line transect survey conducted in 2006 and data from seven previous surveys collected between 1985 and 1997. To overcome the difficulty of small sample size and inconsistency in survey design, we used an adjustment method using multiple covariates and sensitivity analysis by considering several scenarios. Abundance estimates showed similar long‐term trends among scenarios. The northern form of G. macrorhynchus was more abundant in 1985 than in 1991–2006. The annual catch of the northern form of G. macrorhynchus exceeded the potential biological removal (PBR), especially in the 1980s. Thus, the commercial take in the early 1980s was suspected as a partial cause of a serious abundance decrease. These results provide valuable information for interpreting the impacts of coastal whaling, and to develop future management plans.     

Assessment of motility,acrosomal integrity,and viability of giant panda (Ailuropoda melanoleuca) sperm following short‐term storage at 4°C

Short‐term cool storage of semen affords many of the same benefits as cryopreservation, without the extensive cryoinjury to sperm associated with freezing. Semen storage for artificial insemination (AI) is an integral part of giant panda captive breeding programs. AI functions to generate offspring from males that have never bred, are underrepresented, or are unable to breed with genetically desirable females due to geographic separation. In the present study, semen was collected by electroejaculation from six giant pandas and extended in four media (TEST with 0% or 5% glycerol, or SFS with 0% or 5% glycerol). Subsequently, initial motility (MOT), speed of progression (SOP), percent live (% L), and percent normal acrosome (% NAR) values were recorded. These parameters were assessed again at 4, 8, 24, and 48 hr of incubation at 4°C in each medium. Motility scores (MS) were calculated as MOT×SOP². The MS of each sample was also recorded after the addition of 20 mM caffeine. Results were expressed as a percent of the initial value (% I). Although all three parameters decreased over time, the MS decreased at a faster rate than either the % L or the % NAR. There were significant differences between individual pandas for each measured parameter, while only % IMS was significantly affected by medium (P=.0006). The addition of caffeine increased % IMS at all time periods and reduced the differences between media to nonsignificant levels. The addition of glycerol was not beneficial for short‐term semen storage. These data indicate that storage of giant panda semen at 4°C for up to 48 hr maintains sperm viability at a level sufficient for use in an AI program. Zoo Biol 22:529–544, 2003. © 2003 Wiley‐Liss, Inc.     

Hardness does not affect the physiological responses of wild and domestic strains of diploid and triploid rainbow trout Oncorhynchus mykiss to short‐term exposure to pH 9.5

This study examined the effects of water hardness on the physiological responses associated with high pH exposure in multiple strains of diploid and triploid rainbow trout Oncorhynchus mykiss. To accomplish this, three wild strains and one domesticated strain of diploid and triploid O. mykiss were abruptly transferred from control soft water (City of Vancouver dechlorinated tap water; pH 6·7; [CaCO₃] < 17·9 mg l^?1) to control soft water (handling control), high pH soft water (pH 9·5; [CaCO₃] < 17·9 mg l^?1), or high pH hard water (pH 9·5; [CaCO₃] = 320 mg l^?1) followed by sampling at 24 h for physiological measurements. There was a significant effect of ploidy on loss of equilibrium (LOE) over the 24 h exposure, with only triploid O. mykiss losing equilibrium at high pH in both soft and hard water. Furthermore, exposure to pH 9·5 resulted in significant decreases in plasma sodium and chloride, and increases in plasma and brain ammonia with no differences between soft and hard water. There was no significant effect of strain on LOE, but there were significant differences between strains in brain ammonia and plasma cortisol. Overall, there were no clear protective effects of hardness on high pH exposure in these strains of O. mykiss.     

The effectiveness of short‐term fox control in protecting a seasonally vulnerable species,the Eastern Long‐necked Turtle (Chelodina longicollis)

Reducing predation by introduced predators on seasonally vulnerable prey is of interest to biodiversity and game managers around the world. In Australia, the Red Fox (Vulpes vulpes) is a significant predator of freshwater turtle nests, destroying up to 93% of nests. We used a nonrandomized intervention study to assess the effectiveness of a short‐term (3‐week) but broad‐scale baiting operation in reducing the level of nest predation on artificial turtle nests around a complex lake system during a major flooding event in north‐western Victoria. Estimates of fox occupancy declined from 0.58 (0.44–0.70 95% CI) to 0.34 (0.21–0.46 95% CI) following fox control. Modelling of nest‐survival rates indicated there was no significant change in survival rates. Effective short‐term predator control to protect seasonally vulnerable prey is desirable and achievable. Knowledge of underlying predator density, predator–bait encounter and consumption rates, and the optimal duration of short‐term control is needed to reduce the risk to prey.     

Habitat selection of an endangered primate,the samango monkey (Cercopithecus albogularis schwarzi): Integrating scales to prioritize habitat for wildlife management

AimAs habitat loss continues to accelerate with global human population growth, identifying landscape characteristics that influence species occurrence is a key conservation priority in order to prevent global biodiversity loss. In South Africa, the arboreal samango monkey (Cercopithecus albogularis sp.) is threatened due to loss and fragmentation of the indigenous forests it inhabits. The aim of this study was to determine the habitat preferences of the samango monkey at different spatial scales, and to identify key conservation areas to inform management plans for this species.LocationThis study was carried out in the western Soutpansberg Mountains, which represents the northernmost population of samango monkeys within South Africa, and the only endangered subspecies (C. a. schwarzi).MethodsWe used sequentially collected GPS points from two samango monkey groups followed between 2012 and 2017 to quantify the used and available habitat for this species within the western Soutpansberg Mountains. We developed 2nd‐order (selection of ranging area), 3rd‐order (selection within range), and 4th‐order (feeding site selection) resource selection functions (RSFs) to identify important habitat features at each scale. Through scale integration, we identified three key conservation areas for samango monkeys across Limpopo Province, South Africa.ResultsHabitat productivity was the most important landscape variable predicting probability of use at each order of selection, indicating the dependence of these arboreal primates on tall‐canopy indigenous forests. Critical habitat across Limpopo was highly fragmented, meaning complete isolation between subpopulations is likely.Main conclusionsUnderstanding the habitat characteristics that influence samango monkey distribution across South Africa is crucial for prioritizing critical habitat for this species. Our results indicated that large, contiguous patches of tall‐canopy indigenous forest are fundamental to samango monkey persistence. As such, protected area expansion of large forest patches and creation of forest corridors are identified as key conservation interventions for this species.     

Effects of silicate resupply to silicate‐deprived Thalassiosira weissflogii (Bacillariophyceae) in stationary or senescent phase: short‐term patterns of growth and cell death

The ability of nutrient‐deprived phytoplankton to recover in the short term when nutrients are resupplied has been studied for nitrogen and phosphorus, but the case for silicate (Si) is poorly understood. Si‐limited Thalassiosira weissflogii (Grunow) Fryxell et Hasle (grown in batch culture) was harvested in stationary phase (when cell numbers stopped increasing ~2 d after Si depletion) and senescence (when cell numbers declined ~4 d after Si depletion) and Si was resupplied at different concentrations (from 0 to 100 μM). Cell numbers, proportion of dead cells, variable fluorescence emissions (F_v/F_m), and activities of proteases were measured during Si depletion and for 24 h after Si resupply. As Si was depleted, the specific growth rate declined, dead cells increased from ~2% in log phase, to ~25% in stationary phase to over 35% in senescence, and activities of proteases associated with cell death increased several‐fold. Concentration‐dependent recovery of growth rate was seen after 24 h for cultures resupplied with Si in stationary phase but not in senescence. However, resupply of Si at 100 μM to stationary phase cultures alone increased protease activity to nearly the levels seen in senescence. Differences in the responses to Si resupply suggest that the ability and time to recover from Si depletion depend not only on the growth phase but also on the concentration resupplied.     

Postrelease movement of rehabilitated harbor seal (Phoca vitulina richardii) pups compared with cohort‐matched wild seal pups

Harbor seal (Phoca vitulina richardii) populations in the inland waters of Washington and British Columbia are at or near carrying capacity. Stranded pups often are collected and admitted to rehabilitation centers, and then released when they reach a weight of 22 kg and meet a variety of preestablished health and release conditions. While rehabilitation is common practice, it is unclear if rehabilitated seal pups behave like wild weaned pups. Using satellite transmitters, we compared movement patterns of 10 rehabilitated pups with 10 wild weaned pups. When released, rehabilitated seals were longer and heavier than wild pups, while wild pups had a larger mean axillary girth. No clinically different blood parameters were detected. On average, rehabilitated harbor seal pups traveled nearly twice as far cumulatively, almost three times as far daily, and dispersed over three times as far from the release site compared to wild weaned seals. Additionally, wild harbor seals transmitted nearly twice as long as did rehabilitated seals. These patterns suggest that learned behavior during the brief 3–4 wk nursing period likely enables wild harbor seal pups to move less daily and remain closer to their weaning site than rehabilitated pups.     

Influence of short‐term drought conditions and subsequent re‐watering on the physiology and proteome of Lolium multiflorum/Festuca arundinacea introgression forms,with contrasting levels of tolerance to long‐term drought

Festuca arundinacea is a drought tolerant species. Lolium multiflorum has better forage quality but lower tolerance to abiotic stresses. Their hybrids offer an opportunity to perform research on the molecular basis of tolerance to drought. The aim of this work was to recognise the mechanisms of response to short‐term drought (11 days) in a glasshouse in two L. multiflorum/F. arundinacea introgression forms with distinct levels of tolerance to long‐term drought (14 weeks) in the field. Measurements of physiological parameters, analyses of protein accumulation profiles using two‐dimensional gel electrophoresis, and mass spectrometry identification of proteins, which were accumulated differentially between the selected genotypes during short‐term drought, were performed. Genotype 7/6, with lower yield potential during 14 weeks of drought, and lower ability to re‐grow after watering, had a higher capacity for photosynthesis during 11 days of drought. Genotype 4/10, more tolerant to long‐term drought, was able to repair damaged cell membranes after watering and was also characterised by lower transpiration during short‐term drought. A total of 455 proteins were analysed, and the 17 that were differentially accumulated between the two genotypes were identified. The results of physiological and proteomic research led to a hypothesis that the higher photosynthetic capacity of genotype 7/6 could be due to a more efficient Calvin cycle, supported by higher accumulation of crucial proteins involving chloroplast aldolase.     

Single nucleotide polymorphisms in the insulin‐like growth factor 1 (IGF1) gene are associated with growth‐related traits in farmed Atlantic salmon

Understanding the genetic basis of variation in traits related to growth and fillet quality in Atlantic salmon is of importance to the aquaculture industry. Several growth‐related QTL have been identified via the application of genetic markers. The IGF1 gene is considered a highly conserved and crucial growth‐regulating gene in salmonid species. However, the association between polymorphisms in the IGF1 gene and growth‐related traits in Atlantic salmon is unknown. Therefore, in this study, regions of the Atlantic salmon IGF1 gene were sequenced, aligned and compared across individuals. Three SNPs were identified in the putative promoter (SNP1, g.5763G>T; GenBank no. AGKD01012745 ), intron 1 (SNP2, g.7292C>T; GenBank no. AGKD01012745 ) and intron 3 (SNP3, g.4671A>C; GenBank no. AGKD01133398 ) regions respectively. These SNPs were genotyped in a population of 4800 commercial Atlantic salmon with data on several weight and fillet traits measured at harvest (at approximately 3 years of age). In a mixed model, association analysis of individual SNPs, SNP1 and SNP3 were both significantly associated with several weight traits (P < 0.05). The estimated additive effect on overall harvest weight was approximately 35 and 110 g for SNPs 1 and 3 respectively. A haplotype analysis confirmed the association between genetic variation in the IGF1 gene with overall body weight (P < 0.05) and fillet component traits (P < 0.05). Our findings suggest the identified nucleotide polymorphisms of the IGF1 gene may either affect farmed Atlantic salmon growth directly or be in population‐wide linkage disequilibrium with causal variation, highlighting their possible utility as candidates for marker‐assisted selection in the aquaculture industry.     

Assessing the short‐term impact of an insecticide (Deltamethrin) on predator and herbivore abundance in soybean Glycine max using a replicated small‐plot field experiment

Abstract A greater understanding of the relative impact of insecticide use on non‐target species is critical for the incorporation of natural enemies into integrated pest management strategies. Here we use a small‐plot field trial to examine the relative impact of an insecticide on herbivores and predators found in soybean (Glycine max L.), and to highlight the issues associated with calculating impact factors from these studies. The pyrethroid insecticide (Deltamethrin) caused a significant reduction in invertebrate abundance in the treated plots, and populations did not recover to pre‐treatment levels even 20 days after spraying. To assess the relative impact of the spray on arthropods we first examined the mean difference in abundance in each plot before and after spraying. All herbivores decreased in abundance in the sprayed plots but increased in the control plots after spraying. Most predators (excluding hemipterans) showed a decrease in the control plots but a proportionally greater decrease in the sprayed plots. Next we examined the corrected percentage population reduction calculated using Abbott's formula. All predators (including Araneae) experienced a greater reduction (mean 87% ± 3.54 SE) than herbivores (mean 56% ± 4.37 SE) and Araneae alone (mean 71% ± 8.12 SE). The range in values across the plots varied and made categorising overall impact subjective for some taxa. Despite the constraints associated with small‐plot trials, by using a combination of impact factors and examining community‐level response across time, we did get some indication of the likely impact of this insecticide if used in a commercial situation.