Papio Cranium from the Hominin-Bearing Site of Malapa: Implications for the Evolution of Modern Baboon Cranial Morphology and South African Plio-Pleistocene Biochronology

A new partial cranium (UW 88-886) of the Plio-Pleistocene baboon Papio angusticeps from Malapa is identified, described and discussed. UW 88-886 represents the only non-hominin primate yet recovered from Malapa and is important both in the context of baboon evolution as well as South African hominin site biochronology. The new specimen may represent the first appearance of modern baboon anatomy and coincides almost perfectly with molecular divergence date estimates for the origin of the modern P. hamadryas radiation. The fact that the Malapa specimen is dated between ~2.026–2.36 million years ago (Ma) also has implications for the biochronology of other South African Plio-Pleistocene sites where P. angusticeps is found.     

Albino and melanistic genets (<Emphasis Type="Italic">Genetta genetta</Emphasis>) in Europe

While melanistic genets (Genetta spp.) are well known in a few species of the genus, albino specimens have not been described to date. Here, we report on the presence of unusual albino and melanistic common genets (Genetta genetta) in Spain, discussing their frequency of occurrence in the wild. Melanistic and albino common genets are not known in the original African range of the species, thus phenotypical variability in coat colour appears to be greater in Europe, its introduced range. Natural (e.g. a reduced risk of predation in Europe) and/or artificial (e.g. captive-rearing of the species) selection could explain this fact, but more research on the topic is needed.     

Carnivoran remains from the Malapa hominin site, South Africa

Recent discoveries at the new hominin-bearing deposits of Malapa, South Africa, have yielded a rich faunal assemblage associated with the newly described hominin taxon Australopithecus sediba. Dating of this deposit using U-Pb and palaeomagnetic methods has provided an age of 1.977 Ma, being one of the most accurately dated, time constrained deposits in the Plio-Pleistocene of southern Africa. To date, 81 carnivoran specimens have been identified at this site including members of the families Canidae, Viverridae, Herpestidae, Hyaenidae and Felidae. Of note is the presence of the extinct taxon Dinofelis cf. D. barlowi that may represent the last appearance date for this species. Extant large carnivores are represented by specimens of leopard (Panthera pardus) and brown hyaena (Parahyaena brunnea). Smaller carnivores are also represented, and include the genera Atilax and Genetta, as well as Vulpes cf. V. chama. Malapa may also represent the first appearance date for Felis nigripes (Black-footed cat). The geochronological age of Malapa and the associated hominin taxa and carnivoran remains provide a window of research into mammalian evolution during a relatively unknown period in South Africa and elsewhere. In particular, the fauna represented at Malapa has the potential to elucidate aspects of the evolution of Dinofelis and may help resolve competing hypotheses about faunal exchange between East and Southern Africa during the late Pliocene or early Pleistocene.     

Taphonomic Analysis of the Faunal Assemblage Associated with the Hominins (Australopithecus sediba) from the Early Pleistocene Cave Deposits of Malapa,South Africa

Here we present the results of a taphonomic study of the faunal assemblage associated with the hominin fossils (Australopithecus sediba) from the Malapa site. Results include estimation of body part representation, mortality profiles, type of fragmentation, identification of breakage patterns, and microscopic analysis of bone surfaces. The diversity of the faunal spectrum, presence of animals with climbing proclivities, abundance of complete and/or articulated specimens, occurrence of antimeric sets of elements, and lack of carnivore-modified bones, indicate that animals accumulated via a natural death trap leading to an area of the cave system with no access to mammalian scavengers. The co-occurrence of well preserved fossils, carnivore coprolites, deciduous teeth of brown hyaena, and some highly fragmented and poorly preserved remains supports the hypothesis of a mixing of sediments coming from distinct chambers, which collected at the bottom of the cave system through the action of periodic water flow. This combination of taphonomic features explains the remarkable state of preservation of the hominin fossils as well as some of the associated faunal material.     

Karyotype of the rare Johnston’s genet<Emphasis Type="Italic">Genetta johnstoni</Emphasis> (Viverridae) and a reassessment of chromosomal characterization among congeneric species

We present herein new data on karyotypes of members of the genusGenetta. G- and C-banded chromosomes of the Johnston’s genetGenetta johnstoni Pocock, 1908 (2n = 50 / FNa = 92) are described for the first time, and compared with those ofG. genetta (2n = 54 / FNa = 92). In addition, the standard karyotype ofG. maculata (2n = 52 / FNa = 96) was studied. A reassessment of taxonomic attribution of previously published material allowed us to characterize (2n, FNa, and chromosome morphology) the karyotypes of three genets, previously unknown (G. pardina, G. letabae andG. tigrina). Our results show that despite a rather low interspecific variability in 2n and FNa, all the species of genets (exceptG. pardina andG. maculata) appear differentiated when chromosomal morphology is taken into account. Although chromosomal banding data are limited, confrontation of G-band karyotypes with preliminary molecular phylogenetic results reveals that karyotypic evolution within the genusGenetta might involve various rearrangements like Robertsonian and tandem translocations, pericentric inversions, and centromere fissions; thus providing at least for some taxa a solid postzygotic isolation. Finally, our study suggests that cytogenetic analyses might constitute a useful tool for questioning interspecific boundaries, especially within the taxonomically debated complex of large-spotted genets.     

Genets (Carnivora, Viverridae) in Africa: an evolutionary synthesis based on cytochrome b sequences and morphological characters

The taxonomy of the genets (genus Genetta) has long been discussed, thus hampering endeavours towards evolutionary reconstruction. Sequence data from the complete cytochrome b gene (cyt b) were generated for 50 specimens representing 15 morphological species in order to allow the production of the first exhaustive molecular phylogeny of the genets. Second, a revised morphological matrix comprising 50 characters was combined with the cyt b data to estimate the level of morphological homoplasy. Phylogenetic analyses were conducted using parsimony, maximum likelihood and Bayesian procedures. Our results based on cyt b contradict a part of the traditional taxonomy of genus Genetta, the servaline and small‐spotted genets being paraphyletic, but confirmed the species status recently re‐investigated for three genets belonging to the large‐spotted complex, including the newly described G. bourloni. The combined analysis yielded similar results although morphological characters were clearly homoplasic. Partitioned Bremer supports indicated conflicting signals between the two data sets throughout the tree, and species‐diagnostic characters, useful for delimiting species boundaries, were significantly correlated to habitat. However, morphological data supported the monophyly of clades (G. victoriae, other genets) (G. servalina, G. cristata), large‐spotted genet complex and forest forms. Our results suggest a complex evolutionary history of the genets in Africa, with a Poiana‐like ancestor inhabiting rain forest, and then a diversification involving two independent invasions of open habitats and one reversion to rain forest. Divergence estimates based on cyt b revealed that splitting events within genets partly follow a climatic speciation model during the cyclical periods of the Quaternary, although ‘primitive’ rain forest lineages diverged earlier, during the Late Miocene and Early Pliocene. © 2004 The Linnean Society of London, Biological Journal of the Linnean Society, 2004, 81 , 589–610.     

Fatty acids’ profiles as indicators of stress induced by of a common herbicide on two marine bivalves species: Cerastoderma edule (Linnaeus, 1758) and Scrobicularia plana (da Costa, 1778)

In Europe, mainly the Mediterranean region, intensive use of fertilizers and pesticides has been recorded over the past 30 years, exceeding, in some cases, the limits of contamination authorized by the European Union. The intensive use of pollutants in fields near ecological coastal wetlands has led to implementation of pesticide monitoring programs to recover aquatic systems such as the Mondego estuary (Figueira da Foz, Portugal). According to information from the agricultural cooperatives of the Mondego valley, Primextra^® Gold TZ is the most-used herbicide in corn crop fields. Biomarkers, such fatty acids (FAs), proved to be new and potentially powerful tools to detect, illustrate, and evaluate exposure to and the effects of contamination hazards. They play important roles in establishing neural levels in organisms’ biochemical and physiological responses and are considered good bio-indicators of stress and potential indicators of ecosystem health. Bivalves are currently used in ecotoxicological bioassays because of their ecological importance, wide geographic distribution, ease of handling in the laboratory and in the field, and their ability to filter and ingest large volumes of water and sediment particles. Thus, the main goal of this work was to determine the toxic and biochemical (namely fatty acid profiles) responses of two size classes (small and big) of the two marine bivalve species Cerastoderma edule and Scrobicularia plana to the herbicide Primextra^® Gold. Furthermore, we aimed to compare the fatty acid contents, and thus the nutritive values, of both species and size classes collected in the field with those under laboratory conditions. Results show S. plana is more sensitive to the herbicide than C. edule. In general, among the larger-sized specimens in the field, S. plana is more nutritive than C. edule, but among the smaller-sized specimens, the opposite tendency is seen, where C. edule presents a greater abundance of FAs.     

The Identity of Specimens of the Anastrepha fraterculus Complex (Diptera, Tephritidae) with Atypical Aculeus Tip

Several specimens collected in Paraguay along with Anastrepha fraterculus (sensu lato) have an aculeus tip similar to species from the fraterculus complex, but the teeth of the aculeus of these specimens are poorly defined. As Anastrepha species identification is based mostly on subtle differences in the aculeus tip, we studied these specimens with atypical aculeus tips (with poorly defined teeth) that slightly differs from the aculeus tip of species of the fraterculus complex (with well-developed blunt teeth), to determine if this is due to intraspecific variation or if it can characterize a full species. The Paraguayan specimens were separated in six groups under stereomicroscope according to variation in their aculeus tip. Specimens within each group were studied by means of morphometrics (traditional and geometric) and gene sequence analysis (COI and ITS1). Morphometric analyses were significant, but no clear groups were formed by the discriminant analyses of the aculeus and wing, and the COI and ITS1 sequence analysis clustered specimens with all six aculeus variations. Therefore, the subtle morphological differences observed in the aculeus tip of Paraguayan specimens are intraspecific variations and the Paraguayan specimens were more genetically closely related to Anastrepha sp. 3 from the fraterculus complex.     

Phoresy of Trichouropoda shcherbakae Hirschmann, 1972 (Acari: Mesostigmata) on beetles of the genus Tetropium Kirby, 1837 (Coleoptera: Cerambycidae) in Białowieża Forest, Poland

The aim of this study was to assess the phoretic relationship between two beetle species of the genus Tetropium and mites from order Mesostigmata. The study was conducted in the Bia?owie?a Forest, which is recognized as one of Europe’s last natural forest areas. Insects were caught over a period of 8 weeks in 72 attractant traps (type Intercept IPM). In total 1250 specimens of genus Tetropium were collected. We analyzed 524 beetles, including 295 specimens of T. castaneum and 229 specimens of T. fuscum. On 49 beetles (9.4%) there were 785 individuals of Trichouropoda shcherbakae (Trematuridae). Mites were more common on T. fuscum, which carried 82% of all collected deutonymphs. Most of the mites found on beetles were attached to their legs. This study reports on changes in the intensity of phoresy in time and location of mite deutonymphs on their host species.     

Cortinarius pseudofallax (Cortinariaceae,Agaricales), the first records from the Iberian Peninsula and Fennoscandia,and taxonomic notes on the C. parvannulatus/cedriolens group

Diverse collections of Cortinarius pseudofallax from several European countries were studied using morphological characters and ITS1-5.8S-ITS2 genes from sequence data. They were compared with some close species such as C. cedriolens, C. neofallax and C. parvannulatus. All these taxa share some features like a light brown pileus, a stipe provided with a more or less developed whitish veil, small and well-ornamented spores and, above all, a typical strong and perfumed acidulous smell; in addition. the phylogenetic tree built with the ITS gene sequences of these vouchers showed that they clustered in a well-supported clade, here treated as section Parvuli. Our specimens of C. pseudofallax are morphologically described and illustrated with pictures of fresh specimens and basidiospores seen under SEM. A discussion of their taxonomic relationships with another group of similar species belonging to the C. decipiens sensu lato complex is presented.     

Early Growth Stages in Coelacanth Fishes

ALL known specimens of the Recent coelacanth fish, Latimeria, are large specimens (mostly more than 100 cm total length) and only one female with eggs has been recorded^1,2. Consequently, the ontogeny and the early growth stages of the Recent coelacanth are unknown. In the fossil record, one specimen of Holophagus (= Undina) from the Upper Jurassic of Solnhofen, southern Germany, has been recorded with two young coelacanths inside³. Watson has argued from this finding that the coelacanths are viviparous but it seems more reasonable to interpret this fossil specimen as a cannibal that had just swallowed two young of its own kind. This interpretation is favoured by the position of the two specimens and by the discovery of other fossil coelacanths containing large specimens of other kinds of fishes in their stomachs⁴.     

Survival,ATP pool,and ultrastructural characterization of benthic foraminifera from Drammensfjord (Norway): response to anoxia

While much evidence indicates that certain benthic foraminifera are facultative anaerobes, little is known regarding the physiologic response of foraminifera to anoxia. In order to assess their response, specimens of four foraminiferal species, collected from a typically dysoxic area of Drammensfjord, Norway (45 m water depth), were incubated in seawater purged with nitrogen. Over a time course of > 3 weeks, the specimens were extracted for adenosine triphosphate (ATP) in a nitrogen-flushed glove bag to assess their survival and ATP reserve under such conditions. For comparative purposes, similar extractions were done on conspecifics one week after their collection from the seafloor, as well as on other conspecifics, obtained from the same site, incubated in aerated conditions. The survival rates of nitrogen-treatedAdercotryma glomeratum, Psammosphaera bowmanni, and Stainforthia fusiformis were not significantly lower than those of the control specimens. However, the ATP concentrations of nitrogen-incubated A. glomeratum and S. fusiformis were significantly lower than those of their aerated conspecifics, while there was no significant difference between the [ATP] of P. bowmanni from the two treatments. Both the survival rate and the ATP concentrations of nitrogen-incubated Bulimina marginata were significantly lower than those of control specimens. The ultrastructure of B. marginata and S. fusiformis incubated in N₂ for 18 days were compared with those of specimens fixed within 15 minutes of collection. For both species, the specimens that survived the experimental treatment had ultrastructures indistinguishable from those fixed just after field collection. However, the ultrastructure of B. marginata differed from that of S. fusiformis in that it lacked the numerous peroxisome-endoplasmic reticulum (ER) complexes and what appeared to be algal chloroplasts observed in S. fusiformis. Copious arrays of paracrystals were observed in both species from the experimental treatment as well as the shipboard-fixed specimens, suggesting that neither population had extensive pseudopodial networks. When considered in combination, our results indicate that the four species respond to and survive anoxia differently, with responses including dormancy and, as yet unidentified, anaerobic metabolic pathways.     

A set of sustainability performance indicators for seafood: Direct human consumption products from Peruvian anchoveta fisheries and freshwater aquaculture

Different seafood products based on Peruvian anchoveta (Engraulis ringens) fisheries and freshwater aquaculture of trout (Oncorhynchus mykiss), tilapia (Oreochromis spp.) and black pacu (Colossoma macropomum), contribute at different scales to the socio-economic development, environmental degradation and nutrition of the Peruvian population. Various indicators have been used in the literature to assess the performance of these industries regarding different aspects of sustainability, notably their socio-economic performance. In this study, a novel set of indicators is proposed to evaluate the sustainability performance of these industries in Peru, based on life cycle assessment (LCA) and nutritional profiling, as well as on energy and socio-economic assessment approaches. The emphasis is put on the potential of different products to contribute to improving the nutrition of the Peruvian population in an energy-efficient, environmentally friendly and socio-economically sound way. The set of indicators includes biotic resource use (BRU), cumulative energy demand (CED), energy return on investment (EROI), production costs, gross profit generation, added value, and nutritional profile in terms of vitamins, minerals and essential fatty acids; as well as a number of life cycle impact assessment indicators commonly used in seafood studies, and some recently proposed indicators of resource status (measuring the impacts of fish biomass removal at the species and ecosystem levels). Results suggest that more energy-intensive/highly processed products (cured and canned anchoveta products) represent a higher burden, in terms of environmental impact, than less energy-intensive products (salted and frozen anchoveta products, semi-intensive aquaculture products). This result is confirmed when comparing all products regarding their industrial-to-nutritional energy ratio. Regarding the other attributes analysed, the scoring shows that salted and frozen anchoveta products generate fewer jobs and lower gross profit than canned and cured, while aquaculture products maximise them. Overall, it was concluded that less energy-intensive industries (anchoveta freezing and salting) are the least environmentally impacting but also the least economically interesting products, yet delivering higher nutritional value. Aquaculture products maximise gross profit and job creation, with lower energy efficiency and nutritional values. The proposed set of sustainability indicators fulfilled its goal in providing a multi-criteria assessment of anchoveta direct human consumption and freshwater aquaculture products. As often the case, there is no ideal product and the best trade-off must be sought when making decision regarding fisheries and seafood policy. No threshold for performance of the different indicators is offered, because the goal of the comparison is to contrast the relative performance among products, not of products against reference values.     

Phylogeny of Betaphycus (Gigartinales,Rhodophyta) as inferred from COI sequences and morphological observations on B. philippinensis

The phylogeny of the three species that comprise the genus Betaphycus Doty in Silva, Basson and Moe and their phylogenetic relationships with other eucheumatoids are still unresolved. In this study, the utility of the mitochondrial cytochrome oxidase I (COI) marker in resolving their relationships was evaluated. Analyses of the COI sequences from Betaphycus philippinensis Doty and Betaphycus speciosus (Sonder) Doty ex Silva specimens collected from their type localities (Sorsogon, Philippines and Western Australia, respectively) revealed that the two species formed a well-supported clade distinct from Eucheuma J. Agardh and Kappaphycus Doty ex Silva. The genotyped specimens of B. philippinensis were observed to exhibit dorsal protuberances, a characteristic which has been regarded as a key diagnostic feature of Betaphycus gelatinus (Esper) Doty ex Silva. This observation raised the possibility that these two taxa are conspecific. In addition, B. philippinensis specimens were also observed to exhibit morphological features that could be used to distinguish the species from other eucheumatoids, such as the location tetrasporangial nemathecium in the thallus and the presence of apical or lateral pit connections in the tetraspores. The species referred to in the literature as “B. gelatinus” (as Eucheuma gelatinae) collected from northwestern Philippines was identified as a species of Eucheuma based on molecular and morphological evidence. The phylogenetic relationships of this species with other related eucheumatoid taxa were also determined.     

Genetic utility of natural history museum specimens: endangered fairy shrimp (Branchiopoda,Anostraca)

We examined the potential utility of museum specimens as a source for genetic analysis of fairy shrimp. Because of loss of their vernal pool habitat, some fairy shrimp (including Branchinecta sandiegonensis and Branchinecta lynchi) are listed as threatened or endangered in Southern California by the United States Fish and Wildlife Service. Management of those species requires extensive population genetics studies and the resolution of important genetic complexity (e.g. possible hybridization between endangered and non-endangered species). Regulations mandating deposition of specimens of listed species have resulted in thousands of specimens accessioned into the Natural History Museum of Los Angeles County that have been preserved in a variety of solutions. We subsampled those specimens, as well as other Anostraca with known collection and preservation histories, to test their potential for genetic analysis by attempting DNA extraction and amplification for mt16SrDNA. Fixation and preservation in not denatured ethanol had a far greater sequencing success rate than other (and unknown) fixatives and preservatives. To maximize scientific value we recommend field preservation in 95% not denatured ethanol (or, if pure ethanol is unavailable, high-proof drinking spirits, e.g. Everclear™, or 151 proof white rum), followed by storage in 95% not denatured ethanol.     

Benthic freshwater cyanobacteria as indicators of anthropogenic pressures

Freshwater cyanobacteria are hardly used as biological indicators of anthropogenic pressures, possibly for two main reasons: (a) their response to anthropogenic pressures is often poorly known; (b) reliably identifying cyanobacteria species is a challenge for technicians and researchers. We assessed the usefulness of cyanobacteria species as biological indicators of two human stressors: the high orthophosphate input from urban wastewaters; the high nitrate concentration produced by agricultural land use. We analysed variation in benthic cyanobacterial assemblages at 85 sites in South-Central Spain as a response to eight environmental variables: pH, conductivity, temperature, altitude, nitrate, orthophosphate, irrigation land use and non-irrigation land use.Results revealed that conductivity was the main environmental factor that contributed to differences between assemblages. Orthophosphate was more influential for community composition than nitrate. Changes in species composition related to human pressures suggested that some cyanobacteria species (e.g. Nostoc verrucosum, Phormidium autumnale, Plectonema tomasinianum, Rivularia haematites, Tolypothrix distorta) could be useful tools for the bioindication of anthropogenic pressures; while others species provide more information about natural physicochemical reference conditions (Nostoc caeruleum, Phormidium fonticola). Further research into cyanobacteria and macroalgae assemblages in different impacted scenarios could help improve macrophyte indices.     

Towards resolving the identities of the Graphium butterflies (Lepidoptera: Papilionidae) of Peninsular Malaysia

Graphium butterflies are famous in Peninsular Malaysia for their colourful wings, yet their taxonomy remains unresolved. The popular guides to Malaysian butterflies, place the species in one, two or three genera and identification to species using obscure morphological characters can be difficult, especially for the closely related species, G. bathycles bathycloides and G. chironides malayanum. We sequenced the COI mtDNA barcode for Graphium specimens in the Museum of Zoology, University of Malaya to test the utility of DNA barcoding for the identification of Graphium species. Additionally, we sequenced 28S rRNA to examine, in conjunction with COI, the phylogenetic relationships of these species and investigate the validity of Pathysa and Paranticopsis as distinct genera. We found that all species of Graphium possessed a distinctive cluster of DNA barcodes with the exception of specimens originally identified as G. bathycles bathycloides and G. chironides malayanum which shared DNA barcodes. On further examination we found that the morphological determinations were ambiguous as the specimens overlapped for diagnostic characters reported for each species. The COI and 28S rRNA phylogenetic trees showed a similar topology with Paranticopsis species forming a clade nested within a larger clade also comprising Pathysa species. Based on this topology, in order for Pathysa to be a valid genus, at least three other clades within Graphium s.l. would also have to be raised as genera.     

Gerres limbatus Cuvier and G. lucidus Cuvier from the Indo-Malay Archipelagos, the latter corresponding to young of the former (Perciformes: Gerreidae)

Taxonomic status of Gerres limbatus Cuvier in Cuvier and Valenciennes, 1830 and G. lucidus Cuvier in Cuvier and Valenciennes, 1830 was studied. The two species were reassessed as the same species, the latter corresponding to young of the former, on the basis of examination of their eight syntypes and other comparative specimens. Gerres limbatus clearly differs from other congeners in having 2½–3 (usually 2½) scales between the 5th dorsal fin spine base and the lateral line, and four or five diffuse, dark saddle patches mainly along the back in life (more apparent in small specimens less than ca. 65 mm in standard length, or preserved and stressed live specimens) (vs. usually more than 3½ scales between fifth dorsal fin spine base and lateral line, and and no such body color pattern of G. limbatus in other congeners). The species is currently known from the southern and western coasts of India including Sri Lanka, the Malay Peninsula, Gulf of Thailand, and Indonesia, becoming rare in occurrence eastward.