Discovery of a large clonal patch of a social amoeba: implications for social evolution

Studies of genetic population structures of clonally reproducing macro-organisms have revealed large areas where only one clone is found. These areas, referred to as clonal patches, have not been shown to occur in free-living microbes until now. In free-living microbes, high genetic diversity at local scales is usually maintained by high rates of dispersal. We report, however, a highly dense, 12-m clonal patch of the social amoeba Dictyostelium discoideum in a cattle pasture located in a Texas Gulf Coast prairie. We confirm the presence of only one clone by the analysis of 65 samples and amplification of 10 polymorphic microsatellite loci. Samplings of additional cattle pastures nearby showed higher clonal diversity, but with a density of D. discoideum isolates lower than in the clonal patch. These findings show that high rates of microbial dispersal do not always produce genetic diversity at local scales, contrary to the findings of previous studies. The existence of clonal patches may be particularly important for microbial social evolution.     

Characteristics of acute respiratory viral infections in children under conditions of technogenic environmental pollution

The results of observations on children with acute virus respiratory infections (ARVI) and who had long been residents of zones with different levels of technogenic pollution of the atmospheric air are presented. The technogenic pollution of the environment has been found to exert influence on the spread and clinical course of ARVI in children, this influence being the more pronounced, the higher is the level of xenobiotics in the atmospheric air. The severity of the disease is noted to depend on the development of a number of syndromes, aggravating the course of ARVI, such as the neurotoxic and bronchoobstructive syndromes. Bronchical and ENT lesions are the most frequent complication of the main disease. The child population residing under the conditions of high technogenic environmental pollution should be regarded as a group of risk subject to the aggravated course of ARVI, and the examination of sick children should be made with due regard to this circumstance.     

温度对土壤氧化大气CH4的影响

讨论了温度对土壤氧化大气CH4的影响及其机理。当温度较低时土壤也具有一定的氧化大气CH4的能力,两者具有很高的相关关系,但是由于CH4氧化菌对大气CH4具有很强的亲和力以及大气CH4氧化所需活化能较低,因此土壤氧化大气CH4对温度的敏感度远低于产CH4,导致温度系数Q10较小。当大气CH4和O2扩散进入土壤的速率等于土壤中CH4和O2消耗的速率时,大气CH4氧化达到最大值,此时的土壤温度就是CH4氧化的最佳温度。如果温度继续升高并大于最佳温度,由于CH4氧化菌无法与利用O2能力更强的硝化细菌和其它微生物竞争利用土壤空气中有限的O2,使得土壤中CH4氧化菌的繁殖和活性降低。这一作用机理的提出较好地解释了为什么随着温度升高土壤氧化大气CH4能力呈低高低的态势。     

青岛市不同功能区冬季空气微生物群落代谢与多样性特征

选取青岛市5个功能区(市区街道、海滨区域、饮用水源地、垃圾填埋场和人工湿地污水处理系统),采用SAS ISO100空气浮游菌采样器于2013年冬季采集空气微生物样品,应用BIOLOG方法分析空气微生物群落代谢功能多样性,阐明群落代谢与环境相关性。结果表明,不同功能区空气微生物群落碳源代谢强度存在差异,代谢稳定时,海滨区域和饮用水源地样品平均光密度值(AWCD)分别为0.302、0.210,而人工湿地、市区街道及垃圾填埋场分别为0.063、0.025和0.034,海滨区域和饮用水源地空气微生物群落碳源代谢强度明显高于其他功能区。不同功能区空气微生物群落Shannon指数和Simpson指数接近,但海滨区域和饮用水源地Mc Intosh指数明显高于其他功能区。海滨区域和饮用水源地空气微生物群落碳源代谢类型丰富,代谢水平高,人工湿地、市区街道和垃圾填埋场碳源代谢类型单一,代谢水平低。5个功能区空气微生物群落碳源代谢差异呈现区域性,分异代谢差异的主要是羧酸类碳源。风速、温度、湿度等非生物因素对空气微生物群落碳源代谢具有不同程度影响,且不同功能区主导非生物因素存在差异。BIOLOG方法可以提供大量多维数据,能够分析样品间微生物群落碳源代谢差异,客观、全面表征空气微生物群落碳源代谢多样性特征,是研究空气微生物群落功能多样性较理想的方法之一。     

废气处理生物滤器微生物生态学研究进展

废气生物处理是一项新兴的气体污染控制技术,已成为当前环境领域的研究热点.本文概述了生物滤器系统(包括生物过滤器系统和生物滴滤器系统)结构及其去除气体污染物的原理,重点阐述了生物滤器微生物的分离、鉴定及其降解特性,微生物丰度、活性与微生物群落结构多样性之间的相关性,运行条件对微生物群落的影响,微生物群落结构时空变化规律,生物膜形成机理和模型等方面的研究进展,并对今后废气处理生物滤器微生物生态学研究方向进行了展望.     

氮磷添加和栽植密度对大叶相思林土壤微生物群落功能多样性的影响

土壤微生物群落是土壤质量潜在的生态指标,在维持生态系统功能和服务中起着关键的作用。采用Biolog-ECO微平板法,探讨氮磷添加与不同栽植密度交互对大叶相思林(Acacia auriculiformis)土壤微生物功能多样性的影响,以便为建立合理的林分密度和氮磷施肥模式,提高土壤质量提供理论参考。以大叶相思林为研究对象,选择氯化铵(NH4Cl)作为氮肥模拟大气氮沉降,用二水合磷酸二氢钠(NaH2PO4·2H2O)进行磷添加。氮磷处理设置4个水平,即CK、施N、施P和施N+P。种植密度设置4个水平,即1667、2500、4444、10000株/hm²(分别以低密度、中密度、较高密度、高密度表示)。研究结果表明,施P显著提高了4个密度大叶相思林土壤微生物的AWCD值、碳源利用丰富度指数、McIntosh指数、Shannon指数和Simpson指数,而施N和N+P则相反。随着林分密度的减小,各处理的土壤微生物AWCD值趋于减少。通常低密度林分的土壤微生物的丰富度指数、Shannon-Wiener指数、McIntosh指数和Simpson指数较小。     

现代分子生物学技术在瘤胃微生态系统研究中的应用

瘤胃中栖息着大量的微生物,由于这些微生物组成复杂且有些细菌在体外无法培养,目前对这些微生物的了解仍然很少。现代分子生物学技术的发展为研究瘤胃微生物提供了有效的方法,利用核酸探针、基因序列分析、遗传指纹技术、全细胞杂交和实时定量PCR等技术可以对瘤胃微生物的分类及进化关系、区系结构图、重要酶的表达以及目的微生物的准确定量进行更为深入和透彻的研究。发展和利用这些技术不仅可以研究微生物之间的关系以及微生物与饲料颗粒之间时间与空间的关系,还能直接在细菌自然生长的环境中对其各种特征进行研究。     

土壤重金属污染的微生物生态效应研究进展

对近年来土壤重金属污染微生物生态效应的研究进展进行了归纳总结,主要从微生物群落特性和微生物生理、生化参数等几个方面进行了阐述。重金属污染土壤后,尤其是高浓度的重金属污染对微生物生物量和群落结构都有破坏作用,但由于微生物群落结构的复杂性和研究方法的片面性,一直是研究的热点和难点,开发更加简便、直接的方法将是对这方面研究的突破。同时,微生物的生理、生化参数是从另一侧面反映重金属污染对微生物的影响,它是对微生物群落特性研究的有利补充,所以不同方法的合理选择和搭配是实验取得预期结果的关键因素之一。     

肠道菌群功能与影响因素研究进展

人体肠道作为一种营养丰富的天然环境有多达100兆个微生物,其中绝大多数存于结肠内,密度接近1011~1012/m L。人类肠道内的微生物多样性是微生物菌落和宿主共同进化的结果,自然选择和进化使肠道菌群与宿主处于一种动态平衡且稳定的关系。文章综述了肠道菌群对宿主可能产生的影响以及引起肠道菌群发生改变的某些因素,肠道微生物影响宿主的代谢、营养吸收、免疫功能以及神经功能调节,而饮食及其他条件又能引起肠道菌群的改变。深入分析肠道菌群的具体结构、探索不同微生物在宿主体内究竟发挥着怎样的作用以及如何充分利用微生物的不同特性改善人类健康应成为今后研究的重点方向。     

Population bottlenecks constrain host microbiome diversity and genetic variation impeding fitness

It is becoming increasingly clear that microbial symbionts influence key aspects of their host’s fitness, and vice versa. This may fundamentally change our thinking about how microbes and hosts interact in influencing fitness and adaptation to changing environments. Here we explore how reductions in population size commonly experienced by threatened species influence microbiome diversity. Consequences of such reductions are normally interpreted in terms of a loss of genetic variation, increased inbreeding and associated inbreeding depression. However, fitness effects of population bottlenecks might also be mediated through microbiome diversity, such as through loss of functionally important microbes. Here we utilise 50 Drosophila melanogaster lines with different histories of population bottlenecks to explore these questions. The lines were phenotyped for egg-to-adult viability and their genomes sequenced to estimate genetic variation. The bacterial 16S rRNA gene was amplified in these lines to investigate microbial diversity. We found that 1) host population bottlenecks constrained microbiome richness and diversity, 2) core microbiomes of hosts with low genetic variation were constituted from subsets of microbiomes found in flies with higher genetic variation, 3) both microbiome diversity and host genetic variation contributed to host population fitness, 4) connectivity and robustness of bacterial networks was low in the inbred lines regardless of host genetic variation, 5) reduced microbial diversity was associated with weaker evolutionary responses of hosts in stressful environments, and 6) these effects were unrelated to Wolbachia density. These findings suggest that population bottlenecks reduce hologenomic variation (combined host and microbial genetic variation). Thus, while the current biodiversity crisis focuses on population sizes and genetic variation of eukaryotes, an additional focal point should be the microbial diversity carried by the eukaryotes, which in turn may influence host fitness and adaptability with consequences for the persistence of populations.     

宁夏燃煤电厂周边土壤、植物和微生物生态化学计量特征及其影响因素

大气酸沉降增加对陆地生态系统的影响已得到了广泛证实,但有关酸沉降累积下工业排放源周边植被-土壤系统元素平衡特征及其影响机制的研究较少。燃煤电厂是主要的工业酸排放源之一。因此,以宁东能源化工基地3个燃煤电厂为观测点,研究了电厂周边土壤-植物叶片-微生物生态化学计量特征,分析了叶片和微生物生物量生态化学计量特征与降水降尘S、N沉降量及土壤性质的关系。结果表明：土壤和微生物生物量C ： N ： P生态化学计量特征变异系数较大,叶片各指标的变异系数较小。与受人类活动影响较少的其他同类型区相比,研究区具有较高的土壤有机C水平和N、P供给,且P相对于N丰富。植物可能主要受N限制,而微生物主要受P限制;土壤及微生物元素间均存在极显著的线性关系（P<0.001）。叶片全C与全N、全P均无显著的关系（P>0.05）。叶片全N、全P和N ： P具有高的内稳性。微生物生物量N ： P内稳性较强,但生物量N和P内稳性较弱,对土壤环境的变化反应敏感;SO₄^2-沉降有助于促进叶片对P的摄取和微生物对C、N、P的固持。少量NO₃^-沉降有利于叶片N摄取,但持续增加的NO₃^-沉降可能会使土壤P受限性增强,进而抑制叶片P摄取和微生物生物量积累。土壤酶活性、Ca²⁺和含水量亦显著影响着植物和微生物元素生态化学计量关系（P<0.05）。因此,今后还需结合多个电厂的土壤性质和植被状况,从较长时间尺度上深入揭示酸沉降增加对工业排放源周边植被-土壤系统元素平衡特征的影响机制。     

Prokaryotic and Eukaryotic Airborne Microorganisms as Tracers of Microclimatic Changes in the Underground (Postojna Cave, Slovenia)

Bioaerosols in cave air can serve as natural tracers and, together with physical parameters, give a detailed view of conditions in the cave atmosphere and responses to climatic changes. Airborne microbes in the Postojna Cave system indicated very dynamic atmospheric conditions, especially in the transitory seasonal periods between winter and summer. Physical parameters of cave atmosphere explained the highest variance in structure of microbial community in the winter and in the summer. The airborne microbial community is composed of different microbial groups with generally low abundances. At sites with elevated organic input, occasional high concentrations of bacteria and fungi can be expected of up to 1,000?colony-forming units/m(3) per individual group. The most abundant group of airborne amoebozoans were the mycetozoans. Along with movements of air masses, airborne algae also travel deep underground. In a cave passage with elevated radon concentration (up to 60?kBq/m(3)) airborne biota were less abundant; however, the concentration of DNA in the air was comparable to that in other parts of the cave. Due to seasonal natural air inflow, high concentrations of biological and inanimate particles are introduced underground. Sedimentation of airborne allochthonous material might represent an important and continuous source of organic material for cave fauna.     

景观生态学在大气污染研究中的应用

快速城市化和工业化进程造成了一系列大气污染问题,亟需在宏观尺度上解析大气污染时空分布规律。景观生态学关注格局与过程耦合,景观"源汇"理论可对应解析大气污染物的源与汇效应,将景观生态学的理论与方法引入大气污染研究中已成为解决当前区域发展与大气污染权衡的有效途径。从景观生态学视角辨识了景观与大气污染物的源汇关系,系统梳理了景观格局与大气污染的定量关系,指出当前景观格局指标仍需进一步完善以表征大气污染时空分布特征,而高质量大气污染物时空数据的缺乏是限制景观格局与大气污染过程耦合分析的重要因素,拓展应用景观"源汇"理论,定量解析景观格局对大气污染的源汇效应,同时进一步研发遥感反演技术,实现大气污染物分布格局的精细刻画,将为区域景观规划提供重要支撑。强化大气污染研究中的景观生态学分析途径,将有助于深化景观生态学格局与过程耦合研究体系,也将为景观可持续管理提供有力的科学支撑。     

Evaluation of the desiccation tolerance of blastospores of Paecilomyces fumosoroseus (Deuteromycotina: Hyphomycetes) using a lab-scale, air-drying chamber with controlled relative humidity

The stabilization of living microbial agents for use as biological control agents is often accomplished through desiccation. Our air-drying studies with the entomopathogenic fungus Paecilomyces fumosoroseus have shown that the relative humidity (RH) of the drying air significantly affects the desiccation tolerance and the storage stability of blastospores. Drying air with a RH of more than 40% supported significantly higher rates of initial blastospore survival (68-82%) after drying compared to drying with lower relative humidity air. Drying air with a RH above 50% improved the shelf-life of the air-dried blastospore preparations. Adjustment of the pH or replacement of the spent medium with deionized water (d-H₂O) in the blastospore suspension had no significant impact on blastospore desiccation tolerance or storage stability. We have developed and describe a lab-scale, air-drying chamber that delivers air flow over the sample and that can be operated at controlled relative humidity.     

Use of rooms with laminar air flow]

The paper deals with the problem of dependency of the reduction of microbial contamination and of dust pollution of the air mediu min the CAMERA-BOXES with a liminary flux on the aeration degree. It was shown that the degree of aeration in the camera-box constituted from 330 to 1060, with the rate of the air flux at the filter exit of from 0.2 to 0.6 m/sec. Vertical laminar flux provided release of the air from the microbes and dust. The use of the camera-box with a laminar flux for work requiring sterile conditions is recommended.     

Alternative strategies to sustain N-fertility in acid and calcaric beech forests: Low microbial N-demand versus high biological activity

To challenge the “conventional wisdom” that rates of net N-mineralization increase with pH, we measured net N-mineralization, respiration and/or microbial C and N in four Luxembourg beech forests with similar litter input, but different soil types, using laboratory incubation experiments. Litter input and fungal/bacterial colony ratios were also measured. To test whether the results could be explained by existing theoretical models, equations of C and N dynamics were reformulated to allow estimation of microbial growth efficiency, gross C and N release and microbial uptake, based on measured values of net N-mineralization, respiration and C:N ratios of substrate and microbes.Instead of an increase, net N-mineralization rates showed a significant sevenfold decrease from acid to calcaric soil in the organic layer, and a fourfold decrease in the mineral topsoil. At the same time, microbial N-demand increased with pH, as indicated by the significant decrease in net N-mineralization per unit microbe or unit C respired. These results could be explained by theoretical models. In organic layer and mineral topsoil, despite high gross N-release, net N-mineralization rates decreased with pH because of higher microbial immobilization. Increase in microbial N-demand was associated with a decrease in fungal/bacterial colony ratio: the more the bacteria, the higher the microbial N-demand.Acid and calcaric soils seem to have different strategies to sustain ecosystem N-fertility. In calcaric soil, N-availability to the vegetation seems indeed supported by high biological activity and gross N-release, which is needed to compensate for the potentially high immobilization by bacteria. In acid soil, however, despite low gross N-release, N-availability to the vegetation may not be lower than in calcaric soil, due to high amounts of fungi and low microbial N-demand.     

Air humidity as key determinant of morphogenesis and productivity of the rare temperate woodland fern Polystichum braunii

(1) Most ferns are restricted to moist and shady habitats, but it is not known whether soil moisture or atmospheric water status are decisive limiting factors, or if both are equally important. (2) Using the rare temperate woodland fern Polystichum braunii, we conducted a three‐factorial climate chamber experiment (soil moisture (SM) × air humidity (RH) × air temperature (T)) to test the hypotheses that: (i) atmospheric water status (RH) exerts a similarly large influence on the fern's biology as soil moisture, and (ii) both a reduction in RH and an increase in air temperature reduce vigour and growth. (3) Nine of 11 morphological, physiological and growth‐related traits were significantly influenced by an increase in RH from 65% to 95%, leading to higher leaf conductance, increased above‐ and belowground productivity, higher fertility, more epidermal trichomes and fewer leaf deformities under high air humidity. In contrast, soil moisture variation (from 66% to 70% in the moist to ca. 42% in the dry treatment) influenced only one trait (specific leaf area), and temperature variation (15 °C versus 19 °C during daytime) only three traits (leaf conductance, root/shoot ratio, specific leaf area); RH was the only factor affecting productivity. (4) This study is the first experimental proof for a soil moisture‐independent air humidity effect on the growth of terrestrial woodland ferns. P. braunii appears to be an air humidity hygrophyte that, whithin the range of realistic environmental conditions set in this study, suffers more from a reduction in RH than in soil moisture. A climate warming‐related increase in summer temperatures, however, seems not to directly threaten this endangered species.     

Air pollution could drive global dissemination of antibiotic resistance genes

Antibiotic-resistant pathogens pose a significant threat to human health. Several dispersal mechanisms have been described, but transport of both microbes and antibiotic resistance genes (ARGs) via atmospheric particles has received little attention as a pathway for global dissemination. These atmospheric particles can return to the Earth’s surface via rain or snowfall, and thus promote long-distance spread of ARGs. However, the diversity and abundance of ARGs in fresh snow has not been studied and their potential correlation with particulate air pollution is not well explored. Here, we characterized ARGs in 44 samples of fresh snow from major cities in China, three in North America, and one in Europe, spanning a gradient from pristine to heavily anthropogenically influenced ecosystems. High-throughput qPCR analysis of ARGs and mobile genetic elements (MGEs) provided strong indications that dissemination of ARGs in fresh snow could be exacerbated by air pollution, severely increasing the health risks of both air pollution and ARGs. We showed that snowfall did effectively spread ARGs from point sources over the Earth surface. Together our findings urge for better pollution control to reduce the risk of global dissemination of antibiotic resistance genes.Subject terms: Environmental sciences, Air microbiology