Behavioral responses to variations in population size: a stochastic evolutionary game

The effects of variations in population size may be importantin the evolution of individual behavior. We use simulation modelsto study the stochastic evolutionary contest between two behavioralstrategies affecting individual survival and reproduction, oneconservative (low fecundity and low mortality risk), the otherrisky (high fecundity and high mortality risk). Trade-offs ofthis kind are involved in many types of behavior, includingforaging under risk of predation, parental care, size versusnumber of offspring, and so on. We treat the combined effectsof demographic and environmental variance, demographic variancebeing important for small populations and environmental variancebeing important at all population levels. With high environmentalvariance, population numbers fluctuate sharply, so that demographicvariance becomes intermittently important. As a consequence,either behavioral morph may become fixed in the population,depending on initial conditions and on chance events. We treatboth phenotypic and genetic models. In a genetic model withthe heterozygote employing the risky strategy, both behavioralmorphs may coexist as a randomly fluctuating polymorphism.     

Nutritional indices of juvenile Caribbean spiny lobsters in a Mexican reef lagoon: Are changes over a 10-year span related to the emergence of Panulirus argus Virus 1 (PaV1)?

We compared two indices of nutritional condition, the relative weight of the digestive gland (RWDG) and the ratio of weight to carapace length (weight/CL ratio), of the first three benthic phases, algal juveniles (7–25 mm CL), postalgal juveniles (25–45 mm CL), and subadults (45–79 mm CL) of Caribbean spiny lobster (Panulirus argus) dwelling in a shelter-poor reef lagoon before (1995) and after (2005) deployment of large artificial shelters (“casitas”) in 1998. To provide an experimental baseline, in 2005 we also conducted a laboratory experiment to assess the effect of starvation on both nutritional indices. Through 25-day trials, starvation significantly decreased the mean RWDG of all three juvenile phases, but did not affect their weight/CL ratios. In the field, casitas significantly enhanced juvenile lobsters relative to control sites and to prior values, but between 1995 and 2005 there was a significant decrease in condition of algal juveniles (both indices) and postalgal juveniles (only the RWDG), but not of subadults. These results would appear to counter previous findings that, for P. argus, food is not limiting and nutritional condition is not density-dependent. However, in 2000, a new pathogenic virus that has a distinct predilection for small juveniles, Panulirus argus Virus 1 (PaV1), emerged in the reef lagoon. Among other effects, this lethal virus causes a marked atrophy of the digestive gland. Through the laboratory trials and in the field, prevalence of visibly diseased individuals was highest in algal juveniles and lowest in subadults. These individuals were excluded from statistical analyses, but the disease progression may affect the digestive gland progressively given that newly infected lobsters take several weeks to become visibly diseased. Up to 2006, PaV1 had not significantly impacted lobster density on casita sites, but because P. argus is highly gregarious and transmission of PaV1 appears to be mainly by contact, futher investigation is required. These issues are relevant to enhancement of spiny lobsters and assessment of ecological impacts of marine diseases.     

Population Dynamics of Evolutionary Change: Demographic Parameters as Indicators of Fitness

I evaluated demographic parameters as indicators of fitness by calculating the net reproductive rate (R₀), exponential rate of change (r), lifetime reproductive success (LRS), and Malthusian parameter (m) for nine genotypes and four phenotypes (two alleles at each of two independent loci) of an age-structured population. The given starting conditions included age-specific survival rates of males and females and age-specific fecundity of females for each genotype (to simplify the problem I presumed no differences in survivorship or fecundity of genotypes with the same phenotype) and the same age structure for each genotype. The prevailing genotype had the greatestm, but it did not have the greatestr,R₀, or LRS, or even the greatest survivorship of either juveniles or adults, or the greatest fecundity. This result indicates thatmis the only correct measure of fitness (i.e., as a predictor of which genotype should prevail from among a group of genotypes) and that comparisons ofr,R₀, LRS, juvenile or adult survival rates, or fecundity may be misleading indicators of which genotype should prevail (i.e., be most “fit”) over time (i.e., be selected for).     

Maturation of the intestinal digestion and of microbial activity in the young rabbit: impact of the dietary fibre:starch ratio

The developmental changes of intestinal digestive potential and caecal microbial activity were described in suckling and weaned rabbits according to two feeding programmes. Two groups of thirteen litters were fed from 18 to 42 days old a “High” or a “Medium” NDF:starch ratio diet (resp. 2.7 vs 2.0, groups HL and ML) with similar protein and lipid levels, and from 42 to 70 days old the two groups were fed a “Low” NDF:starch ratio diet (1.7). From 25 to 32 days (weaning), the milk and solid feed intake were 22% and 41% higher in ML group (P < 0.05), and the mortality by diarrhoea was 4 units lower (P < 0.01). The whole tract digestive efficiency increased by 10% before weaning, and remained steady (organic matter) or decreased (lipids, protein) after weaning. Energy digestibility was 0.623 and 0.686 for High and Medium diets respectively. From 25 to 42 days, total enzymatic activity in intestinal content increased for chymotrypsin (5-fold, P < 0.001), lipase (10-fold, P < 0.001), amylase (17-fold, P < 0.01) and maltase (11-fold, P < 0.001), while trypsin doubled after weaning. The feeding programme only affected the amylase and maltase activities, that were higher in HL group (P < 0.05). The volatile fatty acids concentration in the caecum was not significantly different among the groups, but it increased by 44% 10 days after weaning. The bacterial fibrolytic enzymes, increased by 30% after weaning and were similar among the two groups. The study revealed that the intestinal digestive maturation and the caecal microbial activity of the rabbit evolved markedly between 3 and 5 weeks of age, and was weakly affected when the NDF:starch ratio decreased from 2.7 to 2.0.     

Rapid monitoring of cell size, vitality and lipid droplet development in the oleaginous yeast Waltomyces lipofer

The aim of this work was the development of rapid methods suitable for monitoring the growth of the oleaginous yeast Waltomyces lipofer by means of cell size, vitality and the development of internal lipid droplets throughout different growth phases. Oleaginous yeasts are of interest for the industrial production of lipids and therefore precise monitoring of growth characteristics is needed.This paper provides information about both the method development as well as about examples for their use in monitoring applications. Cell size and shape were determined using FPIA (Flow Particle Image Analysis). Vitality and internal lipid droplets were measured using two independent staining methods for Flow Cytometry. Double staining with cFDA & PI was used for the distinction between “vital”, “sublethal” and “dead” subpopulations, whereas Nile Red allowed the monitoring of lipid accumulation. In this approach the method for vitality measurement was optimized focussing on the staining buffer. An addition of 25 mM citric acid and pH 4.8 revealed to be optimal. The cells in the growth experiment showed a constantly high vitality, which was always above 90%, but slowly decreasing over time. In the course of lipid droplet development it could be seen that the cell size and the Nile Red fluorescence intensity increased. It was demonstrated that the tested method combination provides a powerful tool for rapid fermentation monitoring of the oleaginous yeast W. lipofer, which allows gaining information about the desired growth characteristics in less than 45 min. Further applications for the two methods will be discussed in this article.     

Phylogeographic genomics of mitochondrial DNA: Highly-resolved patterns of intraspecific evolution and a multi-species, microarray-based DNA sequencing strategy for biodiversity studies

Phylogeographic genomics, based on multiple complete mtDNA genome sequences from within individual vertebrate species, provides highly-resolved intraspecific trees for the detailed study of evolutionary biology. We describe new biogeographic and historical insights from our studies of the genomes of codfish, wolffish, and harp seal populations in the Northwest Atlantic, and from the descendants of the founding human population of Newfoundland. Population genomics by conventional sequencing methods remains laborious. A new biotechnology, iterative DNA “re-sequencing”, uses a DNA microarray to recover 30–300 kb of contiguous DNA sequence in a single experiment. Experiments with a single-species mtDNA microarray show that the method is accurate and efficient, and sufficiently species-specific to discriminate mtDNA genomes of moderately-divergent taxa. Experiments with a multi-species DNA microarray (the “ArkChip”) show that simultaneous sequencing of species in different orders and classes detects SNPs within each taxon with equal accuracy as single-species-specific experiments. Iterative DNA sequencing offers a practical method for high-throughput biodiversity genomics that will enable standardized, coordinated investigation of multiple species of interest to Species at Risk and conservation biologists.     

A standardized two-sex stable population

The “problem of the sexes” has been one of trying to reconcile inconsistent male and female demographic rates. The present paper deals with that question in the context of a two-sex stable population. A “rectangular” population, with equal numbers of persons in each age-sex group, is introduced as a standard, and a standardization relationship expressed in Eq. (3) relates changes in rectangular population rates to changes in age-sex composition. The standardization relationship is shown to satisfy a number of desirable properties and produce a realistic two-sex model. The standardization approach is then applied to data from Sweden 1973 and the United States 1963, and the results and their implications are discussed. In particular, it is seen that the intrinsic growth rate in a two-sex stable population is not necessarily bounded by the growth rate of the associated male and female one-sex stable populations.     

On the concept of the effective population size

The concept of the effective population size is discussed. It is shown that the “eigenvalue” and the “inbreeding” effective population sizes are in principle different, even though they have been sometimes identified in the literature. On the other hand the “eigenvalue” and “variance” effective sizes are usually both close when the latter exists. Since, however, there are many models for which a variance effective size cannot in principle exist, it seems useful to introduce the eigenvalue effective size and to examine some of its properties.     

Demographic analysis of a dominant shrub (Cytisus scoparius): Prospects for encroachment control

Shrub encroachment in pastoral areas subsequent to land-use changes has become a major problem for biodiversity and pastoral resource conservation. Controlling encroachment by grazing is the most promising prospect at this time, but the impact of small domestic ruminants on the population dynamics of dominant shrubby species is still poorly understood. To control the rapid densification of dominant shrub populations means that we have to focus on the early stages of shrub colonisation. In this paper, we present a modelling approach that includes deterministic matrix modelling to understand demography strategy at the very beginning of shrub population growth and to identify potential targeted life stages for control. We collected demographic data over a period of 5 years on the European dominant shrub, Cytisus scoparius (Scotch broom; Fabaceae), which is often part of the heathlands that establish themselves on former permanent grasslands in Europe. Our results reveal a very high variation in flowering frequency between years and a large contribution of the seed bank to the total number of seedlings that emerge each year. Modelling shows that population growth is very vigorous and is not stopped by repeated “bad years” for seed production. Sensitivity analyses indicate that early life stage survival (seedling, juvenile) has the greatest impact on population growth. These results make it possible to identify juveniles as one of the best targets for control since they combine a high degree of sensitivity in terms of population demography, good palatability for domestic herbivores and easy accessibility within a management schedule.     

Variabilité architecturale du test chez le genre Collyrites (Echinoidea, Disasteroidea) au Jurassique moyen

The aim of this paper is to study the evolution of the architecture of the « apical system–periproct complex » of the genus Collyrites (Echinoidea, Disasteroidea) for species from the Bathonian and Callovian stages (Middle Jurassic). The studied material comes from several localities of the Paris basin. The apical system of the genus Collyrites is subdivided in two parts: (i) an anterior part composed by four genital (1, 2, 3, 4) and three ocular (II, III, IV) plates, called trivium; (ii) a posterior part composed by two ocular plates (I, V) and one genital plate (5), without gonopor, which circle the periproct, called bivium. The genital plate 5, which may collapse in the periproct, is not always visible. The Bathonian–Callovian transition is marked by a subdivision of the bivium in two parts: the periproct breaks up from the posterior ocular plates (I, V). These morphological changes are associated with architectural modifications. The trivium stays relatively stable during the Bathonian and the Callovian, but a supplementary plate may be inserted into the trivium. The bivium shows important modifications linked to the separation of the periproct and the ocular plates (I and V). Such a separation is marked by a strong development of supplementary plates, these ones keeping in connection with the periproct and the ocular plates I and V. The supplementary plates are more and more developed whereas the distance between the periproct and ocular plates increases. The connection between the trivium and the bivium is similarly provided by supplementary plates. The size of these plates seems to significantly increase between the Bathonian and the Callovian. Moreover, some specimens from the Bathonian and the Callovian may have an atypical architecture with a supplementary genital plate or a genital plate with two pores. The “extraxial axial theory” allows to recognize two types of skeleton: (i) an “axial skeleton” corresponding to ocular plates and plates of the ambulacra and interambulacra; (ii) an “extraxial skeleton” corresponding to the genital and supplementary plates, and the periproct. Architectural modifications between the Bathonian and the Callovian is a result of a more important development of the “extraxial skeleton” while the “axial skeleton” shows few modifications during this time interval.     

Depicting the phenotypic space of the annual plant Diplotaxis acris in hyperarid deserts

The phenotypic space encompasses the assemblage of trait combinations yielding well‐suited integrated phenotypes. At the population level, understanding the phenotypic space structure requires the quantification of among‐ and within‐population variations in traits and the correlation pattern among them. Here, we studied the phenotypic space of the annual plant Diplotaxis acris occurring in hyperarid deserts. Given the advance of warming and aridity in vast regions occupied by drylands, D. acris can indicate the successful evolutionary trajectory that many other annual plant species may follow in expanding drylands. To this end, we conducted a greenhouse experiment with 176 D. acris individuals from five Saudi populations to quantify the genetic component of variation in architectural and life history traits. We found low among‐population divergence but high among‐individual variation in all traits. In addition, all traits showed a high degree of genetic determination in our study experimental conditions. We did not find significant effects of recruitment and fecundity on fitness. Finally, all architectural traits exhibited a strong correlation pattern among them, whereas for life history traits, only higher seed germination implied earlier flowering. Seed weight appeared to be an important trait in D. acris as individuals with heavier seeds tended to advance flowering and have a more vigorous branching pattern, which led to higher fecundity. Population divergence in D. acris might be constrained by the severity of the hyperarid environment, but populations maintain high among‐individual genetic variation in all traits. Furthermore, D. acris showed phenotypic integration for architectural traits and, to a lesser extent, for life history traits. Overall, we hypothesize that D. acris may be fine‐tuned to its demanding extreme environments. Evolutionary speaking, annual plants facing increasing warming, aridity, and environmental seasonality might modify their phenotypic spaces toward new phenotypic configurations strongly dominated by correlated architectural traits enhancing fecundity and seed‐related traits advancing flowering time.     

Effects of population size on reproductive success of the endangered and endemic species Primula merrilliana

The reproductive ability related to the population size of the endangered and endemic species Primula merrilliana Schltr.was investigated.In 26 populations observed,only four contain more than 500 flowering individuals,whereas most of them(53.8%) consist of less than 100 flowering individuals.Though the ratio of pin and thrum plants keeps its balance at 1:1 for all populations,the frequency of pin and thrum flowers was significantly biased in most small populations.Population size strongly affected reproductive success; plants in small populations produced significantly fewer flowers and fruits per plant and fewer seeds per fruit,and therefore fewer seeds per plant.The floral density was another important factor that influenced the reproductive success of P.merrilliana,because four main reproductive success parameters (fruits per plant,seeds per fruit,seeds per plant,and the proportion of flowers setting fruit) were all positively correlated with floral density.The size of plants and the number of leaves per plant (measure of habitat quality) were not influenced by the variation of population size,suggesting that the reduced fecundity in small populations may not be a consequence of lower habitat quality,inbreeding depression and pollen limitation as a result of less attractiveness in small populations are therefore likely explanations for these patterns.     

A cDNA microarray assessment of gene expression in the liver of rainbow trout (Oncorhynchus mykiss) in response to a handling and confinement stressor

A purpose-designed microarray platform (Stressgenes, Phase 1) was utilised to investigate the changes in gene expression within the liver of rainbow trout during exposure to a prolonged period of confinement. Tissue and blood samples were collected from trout at intervals up to 648 h after transfer to a standardised confinement stressor, together with matched samples from undisturbed control fish. Plasma ACTH, cortisol, glucose and lactate were analysed to confirm that the neuroendocrine response to confinement was consistent with previous findings and to provide a phenotypic context to assist interpretation of gene expression data. Liver samples for suppression subtractive hybridisation (SSH) library construction were selected from within the experimental groups comprising “early” stress (2–48 h) and “late” stress (96–504 h). In order to reduce redundancy within the four SSH libraries and yield a higher number of unique clones an additional subtraction was carried out. After printing of the arrays a series of 55 hybridisations were executed to cover 6 time points. At 2 h, 6 h, 24 h, 168 h and 504 h 5 individual confined fish and 5 individual control fish were used with control fish only at 0 h. A preliminary list of 314 clones considered differentially regulated over the complete time course was generated by a combination of data analysis approaches and the most significant gene expression changes were found to occur during the 24 h to 168 h time period with a general approach to control levels by 504 h. Few changes in expression were apparent over the first 6 h. The list of genes whose expression was significantly altered comprised predominantly genes belonging to the biological process category (response to stimulus) and one cellular component category (extracellular region) and were dominated by so-called acute phase proteins. Analysis of the gene expression profile in liver tissue during confinement revealed a number of significant clusters. The major patterns comprised genes that were up-regulated at 24 h and beyond, the primary examples being haptoglobin, β-fibrinogen and EST10729. Two representative genes from each of the six k-means clusters were validated by qPCR. Correlations between microarray and qPCR expression patterns were significant for most of the genes tested. qPCR analysis revealed that haptoglobin expression was up-regulated approximately 8-fold at 24 h and over 13-fold by 168 h.     

Morph-ratio variation, population size and female reproductive success in distylous Pulmonaria officinalis (Boraginaceae)

Theory predicts that morph ratios in heterostylous populations are governed by negative frequency-dependent selection typically resulting in equal morph ratios at equilibrium. Previous work on the distylous perennial herb Pulmonaria officinalis, however, showed asymmetric mating between floral morphs and a weak self-incompatibility system, with the long-styled morph (L-morph) producing significantly higher seed set following intramorph crosses and even selfing than the short-styled morph (S-morph), two aspects thought to affect female fecundity and morph-ratio variation. Here, we evaluated morph ratios and population size of all known P. officinalis populations in the northern part of Belgium. Morph ratios deviated significantly from 1:1 (range 0.09-1 L-morph frequency, mean = 0.58). Relative fecundity of the S-morph (i.e. mean seed set of the S-morph/mean seed set of the L-morph) was on average 0.73, was positively related to the frequency of the L-morph, and reached 1 (similar levels of female fecundity) at an average L-morph frequency of 0.66 in the population. As some small populations had the S-morph in majority, our results suggest that local morph ratios are influenced both by the relative fecundity of L- and S-morph individuals and by stochastic processes in small populations.     

The co-evolution of culturally inherited altruistic helping and cultural transmission under random group formation

Limited migration results in kin selective pressure on helping behaviors under a wide range of ecological, demographic and life-history situations. However, such genetically determined altruistic helping can evolve only when migration is not too strong and group size is not too large. Cultural inheritance of helping behaviors may allow altruistic helping to evolve in groups of larger size because cultural transmission has the potential to markedly decrease the variance within groups and augment the variance between groups. Here, we study the co-evolution of culturally inherited altruistic helping behaviors and two alternative cultural transmission rules for such behaviors. We find that conformist transmission, where individuals within groups tend to copy prevalent cultural variants (e.g., beliefs or values), has a strong adverse effect on the evolution of culturally inherited helping traits. This finding is at variance with the commonly held view that conformist transmission is a crucial factor favoring the evolution of altruistic helping in humans. By contrast, we find that under one-to-many transmission, where individuals within groups tend to copy a “leader” (or teacher), altruistic helping can evolve in groups of any size, although the cultural transmission rule itself hitchhikes rather weakly with a selected helping trait. Our results suggest that culturally determined helping behaviors are more likely to be driven by “leaders” than by popularity, but the emergence and stability of the cultural transmission rules themselves should be driven by some extrinsic factors.     

Population structure and reproduction in the neotropical dioecious tree Compsoneura sprucei

Summary In rain forest study plots, the sexes of Compsoneura sprucei (Myristicaceae) were radomly distributed and similar in vegetative dimensions. The sex ratio among adults was estimated as 1.25 male: female. The population showed two flowering episodes per year, of unequal intensity. Sexual dimorphisms in order of increasing difference included the frequency of flowering, the number of flowers per inflorescence and the number of inflorescences per tree. Most females matured only 0–10 seeds per tree per flowering episode. Tree size was a better indicator of fecundity in males than females. Reproduction in both sexes was dominated by a very few prolific trees.     

Selective fruit and seed maturation in Asphodelus albus Miller (Liliaceae)

The fruiting patterns of the rhizomatous perennial Asphodelus albus Miller (Liliaceae) were studied in five populations during 1989 and in one population over 3 years (1988–1990). Fruit/flower (Fr/Fl) ratio and seed/ovule (S/O) ratio varied markedly between populations. Although there were differences between years within the population studied over 3 years, these variations, although statistically signifcant, were less important than those between populations. Neither flowering phenology nor plant size influenced Fr/Fl or S/O ratios. Field experiments tested whether fruit and seed set were pollenor resource-limited. Hand-pollination had no effect on Fr/Fl or S/O ratios, but the reduction of resources by defoliation at the time of flowering decreased both relative components of fecundity. Manipulation of resources by hand-thinning flowers and tiny fruits had no demonstrable effect on these ratios, although brood size of individual fruits was significantly affected. It may be concluded that fruit maturation is resource-limited rather than pollen-limited. Most of the fruits aborted early in the fruiting season, and fruits with higher numbers of developing seeds had a lower probability of abortion than fruits with fewer seeds. Analyses of position effects revealed that the fruits in lower positions in the inflorescence matured preferentially. Furthermore, the two ovules in the same carpel tended either both to fail or both to develop into seeds. The plant's ability to selectively mature only high quality embryos may be limited.     

Seed germination and seedling fitness in Mesua ferrea L. in relation to fruit size and seed number per fruit

Effect of fruit size and seediness (seed number per fruit) was examined on germination and early growth of seedlings in Mesua ferrea L. Fruiting incidence (number of fruited trees in a population) and fruit loading (number of fruits per tree) vary from one year to the other, and were greater in 1997 than in 1998. Seeds from large fruits (> 40 g) are preferred for forestry plantations and those from small fruits (< 40 g) are discarded, despite a greater proportion of small fruits (63.2 %) than large fruits (36.8 %). A fruit, large or small in size, may contain one, two, three or four seeds. The germination percentage of seeds increased from 1-seeded through 4-seeded fruits both in laboratory and greenhouse conditions, and both in case of large and small fruits. Conversely, the mean seed weight and germination time decreased along this gradient, i.e. seeds from 1-seeded fruits were the heaviest and required maximum time for germination, and the seeds from 4-seeded fruits were the lightest and required minimum time for germination. The seeds from small fruits were lighter in weight, achieved lower germination percentages and required greater germination time than the seeds from large fruits in all four seeded categories. Seedlings from seeds from 1-seeded fruits survived better and with stronger vigour after 1 year of growth than seedlings from 2-, 3- and 4-seeded fruits. Further, seedling survival and vigour were greater for seeds from large rather than small fruits.     

Reproductive phenology in three Genisteae (Fabaceae) shrub species of the W Mediterranean Region

We studied the flower duration, the phenology of flowering and fruiting, and flower, fruit, and seed production in three Genisteae shrub species of the W Mediterranean Region: Cytisus multiflorus, C. striatus , and Retama sphaerocarpa . Flower duration was negatively correlated with temperature, and in the case of C. striatus it was also influenced by pollination. In Cytisus multiflorus , which flowers during winter in the population studied, two floral morphs were recognized differentiated by flower size, phenological pattern, and production of the reproductive organs: morph LF (large flowers) and morph SF (small flowers). The former is earlier in phenology but its reproductive success is less than the second since it not only produces significantly fewer flowers/plant, but also a smaller crop of fruit and seeds. The flowering of the LF morph lasted some three months and of the SF morph 11 weeks. The winter-spring flowering C. striatus , with a four month duration of flowering time, is sympatric with C. multiflorus and their flowering periods overlap, but the former is more successful reproductively. Retama sphaerocarpa is clearly spring flowering, with an extremely short duration of flowering (c. 6.5 weeks), but, unlike the other two species which disperse their seeds in the same season in which they are produced, it staggers the dispersal of its diaspores over more than one year. Despite the great flower per plant production, especially in Retama sphaerocarpa , and of the number of fruit initiated, the final crop of fruit and seed/plant is low in the three species (C. multiflorus : fruit 8.40% and seeds 1.96%; C. striatus : fruit 13.09% and seeds 4.12%; Retama sphaerocarpa : fruit 5.65% and seeds 1.33%).