Multi-locus phylogeny and morphology reveal five new species of <Emphasis Type="Italic">Fomitiporia</Emphasis> (Hymenochaetaceae) from China

Five newly identified species of Fomitiporia (F. alpina, F. gaoligongensis, F. hainaniana, F. subrobusta and F. subtropica) and their morphological and molecular characterisation are described in this paper. Fomitiporia alpina sp. nov. is distinguished by its pileate basidiomata, parallel tramal hyphae and large basidiospores (6.5–8 × 6–8 μm), and by its gymnosperm wood-living habitat. Fomitiporia gaoligongensis sp. nov. is distinct from other species due to its semicircular pileus and subglobose to globose basidiospores (6.5–7.6 × 6–7.4 μm). Fomitiporia hainaniana sp. nov. is marked by its resupinate basidiomata, the presence of setae and small globose basidiospores (4–5 × 3.8–4.4 μm). Fomitiporia subrobusta sp. nov. is characterised by its triquetrous basidiomata, small pores (6–9 per mm) with entire and thick dissepiments, and subglobose to obovoid basidiospores (6.2–6.8 × 5.2–6 μm). Fomitiporia subtropica sp. nov. can be differentiated by its resupinate basidiomata, smaller pores (6–10 per mm) and smaller basidiospores (5.2–6 × 4.4–5 μm). Phylogenetic analysis, based on multi-gene comparison of the internal transcribed spacer regions (ITS), nuclear large subunit ribosomal RNA gene regions (nLSU), the translation elongation factor 1-α gene (tef1α) and the second subunit of RNA polymerase II (rpb2), confirmed affinity with the Fomitiporia species and showed association with similar fungi in the genus.     

Mortal combat between ants and caterpillars: an ominous threat to the endangered Schaus swallowtail butterfly (<Emphasis Type="Italic">Heraclides aristodemus ponceanus</Emphasis>) in the Florida Keys,USA

The federally endangered Schaus swallowtail butterfly (Heraclides aristodemus ponceanus) has reached critically low numbers. Exotic ants are a potential threat to H. a. ponceanus and other rare butterflies as they can attack immature stages. Ant surveys conducted in subtropical dry forests in Biscayne National Park documented ant species diversity and relative abundance. A caterpillar predator exclusion experiment using physical barriers in different combinations evaluated caterpillar survivorship of both early and late instar caterpillars exposed to different threats. Ant-caterpillar interactions were also documented by placing caterpillars on plants and observing physical interactions between caterpillars and ants. A total of 1418 ants comprising 25 ant species was captured and identified. In canopies of H. a. ponceanus host plants, 243 ants comprising 12 species were found. The four most common ants collected in the host plant canopies were Pseudomyrmex gracilis, Camponotus planatus, Cremastogaster ashmeadi, and Camponotus floridanus. The predator exclusion experiment revealed survivorship was significantly lower for early and late instar caterpillars without any physical barrier, as well as for early instars not protected by a mesh cage. Pseudomyrmex gracilis and C. floridanus were more aggressive towards caterpillars in comparison to other ant species; these two species ranked first and second in the “ant danger index” ranking predatory abilities of the four most common ant species. Pseudomyrmex gracilis is a common arboreal exotic ant in Biscayne National Park and presents a major threat to caterpillars during their earliest life stages.     

A new and little-known species of the oribatid mite genus <Emphasis Type="Italic">Benoibates</Emphasis> Balogh, 1958 (Acari,Oribatida, Oripodidae) from America

A new oribatid mite species of the genus Benoibates (Oribatida, Oripodidae) is described from Antigua Island. Benoibates antiguaensis sp. n. differs from B. muscicola Baranek 1981 in shorter adanal and notogastral setae and in spiniform anal setae. Benoibates crinitus (Berlese 1910) is redescribed from the USA, based on the topotypes.     

Three new species of <Emphasis Type="Italic">Spadicoides</Emphasis> from Lushan Mountain,China

Spadicoides lushanensis sp. nov., S. multiseptata sp. nov. and S. rostrata sp. nov. are described and illustrated from specimens collected on dead branches of unidentified plants in Lushan Mountain, China. Spadicoides lushanensis is characterized by obclavate, rostrate, pale brown, 40–65?×?4.5–5.5 μm, smooth, 6–8-euseptate conidia. Spadicoides multiseptata is easily distinguished by obclavate, smooth, 11–15-euseptate, 65–115?×?11.5–13 μm, brown to pale brown conidia with a subacute apex. Spadicoides rostrata differs from other described Spadicoides species by obclavate, rostrate, pale brown, 40–65?×?10.5–12.5 μm, smooth, predominantly 5-euseptate conidia. A dichotomous key to Spadicoides species is provided.     

New species of the oribatid mite genus <Emphasis Type="Italic">Galumnella</Emphasis> Berlese, 1916 (Acari,Oribatida, Galumnellidae) from the Philippines

Two new species of the oribatid mite genus Galumnella (Oribatida, Galumnellidae) are described from the Philippines. Galumnella processa sp. n. differs from G. junichiaokii Ermilov, Corpuz-Raros et Shimano, 2014 in a triangular process on the anterior margin of the ventral plate and in smooth bothridial setae. Galumnella quezonensis sp. n. differs from G. cellularis Balogh et Mahunka, 1967 in a larger body and in the presence of bothridial setae with very long and thin apices and of longitudinal ridges in the anogenital region.     

Descriptions of two new species of feather mites (Acarina: Psoroptidia: Pteronyssidae) from Ivory Coast

Two new feather mite species of the family Pteronyssidae Oudemans, 1941 collected from birds captured in Ivory Coast are described: Pteronyssoides cyanomitrae n. sp. from Cyanomitra obscura (Jardine) (Passeriformes: Nectariniidae) and Conomerus pygmaeus n. sp. from Hylia prasina (Cassin) (Passeriformes: Macrosphenidae). Pteronyssoides cyanomitrae n. sp. belongs to the nectariniae species group and differs from the closest species, P. garioui Gaud & Mouchet, 1959, in having, in males, the adanal shield present and setae f longer than setae d on the tarsus III; females of this species have the hysteronotal shield with two small median incisions on the anterior margin barely extending beyond the level of setae e2. Conomerus pygmaeus n. sp. is the first species of this genus found on a passerine host, and seems to be more similar to C. sclerosternus Gaud, 1990. This new species has the following distinctive characters: in females, the opisthosoma has small lobe-like extensions and the central sclerite is fused posteriorly with the lateral opisthosomal sclerites; in males, coxal fields I–IV lack large sclerotised areas.     

Bacterial diversity of the outflows of a Polichnitos (Lesvos,Greece) hot spring,laboratory studies of a <Emphasis Type="Italic">Cyanobacterium</Emphasis> sp. strain and potential medical applications

The bacterial diversity of the outflows of Polichnitos (Lesvos, Greece) hot spring has been investigated. Cyanobacteria showing high sequence homologies with Phormidium sp. and Cyanobacterium aponinum were found. Members of the Alphaproteobacteria closely related to Rhodobium sp. Albidovulum sp., Rhodobacter sp., Microvigra sp., Nitratireductor sp. and Phaeobacter sp. Gammaproteobacteria, Betaproteobacteria and Firmicutes were represented by members of Idiomarina sp., Marinobacter sp., Shinella sp., Bacillus sp. and Clostridium sp. with sequence homologies ranging from 92% to 100%. Members of the Bacteroidetes and Planctomycetes were represented by sequences of novel phylogenetic linkages exhibiting 87–90% sequence homology with type strains. When the hot spring consortium was cultivated in bioreactor repeated batch culture under photo-autotrophic growth conditions at temperature < 30 °C, Cyanobacterium sp. dominated over Phormidium sp. Cyanobacterium sp. seems to have biotechnological potential since its extracellular broth exhibited a strong insecticidal activity against larvae of Aedes aegypti (a vector of important human diseases) and significant anti-cancer activity against the PC3 human prostate cancer cell line, while its toxicity against human endothelial cells was relatively low.     

<Emphasis Type="Italic">Nebaliella ochotica</Emphasis> sp. nov.—new deep-sea species of leptostracans (crustacea: phyllocarida: leptostraca) from the North-west Pacific

Eleven specimens of leptostracans were collected with the help of the camera-epibenthic sledge (C-EBS) in August 2015 at depth 3287–4469 m in the Kurile depression of the Sea of Okhotsk and in the Pacific Ocean to the east of the Boussole Strait (Kurile Islands) during the Russian-German expedition Sokho-Bio. All these specimens relate to new species of genera Nebaliella Thiele, 1904 from family Nebaliidae: N. ochotica. Nebaliella ochotica sp. nov. varies from the other species of Nebaliella by the unique values of the ratio of the rostral flange to exposed keel (2 : 1 in N. ochotica, 3 : 1 in N. antarctica, and 1 : 1 in other species). In this species, article 2 of mandible palp has 1 long seta by distodorsal corner, without stout spicular process and small setae; exopod of pleopod 1 has 5 stout long spicular setae on lateral border, with 1–2 stout long spicular setae on terminal border and with 1–3 distal spicular setae and 10–17 simple setae on medial border. Moreover, N. ochotica differentiates from N. brevicarinata, N. extrema and N. kurila by the absence of carina on anterolateral lower corner of carapace, arom N. brevicarinata and N. extrema—by the absence of ventroproximal tuberculate process on rostrum, and from N. antarctica and N. kurila—by compound articles 1 and 2 on peduncle of antenna.     

Molecular characterisation of four echinostomes (Digenea: Echinostomatidae) from birds in New Zealand,with descriptions of <Emphasis Type="Italic">Echinostoma novaezealandense</Emphasis> n. sp. and <Emphasis Type="Italic">Echinoparyphium poulini</Emphasis> n. sp.

Morphological and molecular characterisation of echinostome specimens (Digenea: Echinostomatidae) recovered in one Anas platyrhynchos L. and one Cygnus atratus (Latham) (Anseriformes: Anatidae) from New Zealand revealed the presence of two known species, Echinostoma miyagawai Ishii, 1932 and Echinoparyphium ellisi (Johnston & Simpson, 1944) and two species new to science. Comparative morphological and phylogenetic analyses supported the distinct species status of Echinostoma novaezealandense n. sp. ex Branta canadensis (L.), A. platyrhynchos and C. atratus, and Echinoparyphium poulini n. sp. ex C. atratus. Echinostoma novaezealandense n. sp., a species of the “revolutum” species complex characterised by the possession of a head collar armed with 37 spines, keyed down to E. revolutum but was distinguished from the latter in having a much narrower body with almost parallel margins, longer oesophagus, wider cirrus-sac, larger seminal vesicle, much smaller ventral sucker, ovary, Mehlis’ gland and testes, more anteriorly located ovary and testes, and distinctly smaller eggs (81–87 × 42–53 vs 106–136 × 55–70 µm). This new species appears similar to Echinostoma acuticauda Nicoll, 1914 described in Australia but differs in having a longer forebody, more posteriorly located ovary and testes, and much smaller eggs (81–87 × 42–53 vs 112–126 × 63–75 µm). Echinoparyphium poulini n. sp. is differentiated from the four species of Echinoparyphium possessing 37 collar spines considered valid as follows: from E. chinensis Ku, Li & Chu, 1964 in having a much smaller body, four (vs five) angle spines and simple seminal vesicle (vs bipartite); from E. schulzi Matevosyan, 1951 in having a less robust body at a comparable body length, much smaller ventral sucker, ovary and testes, and longer but narrower eggs (87–109 × 50–59 vs 70–85 × 60–84 µm); and from the two smaller forms, E. serratum Howell, 1968 and E. aconiatum Dietz, 1909, in a number of additional metrical features correlated with body size and especially in the possession of much larger collar spines. Partial fragments of the mitochondrial nad1 and 28S rRNA genes were amplified for representative isolates of the four species and analysed together with sequences for Echinostoma spp. and Echinoparyphium spp. available on GenBank. Phylogenetic analyses based on the mitochondrial nad1 gene revealed congruence between the molecular data and species identification/delineation based on morphology; this was corroborated by the 28S rDNA sequence data.     

Setae thickening in <Emphasis Type="Italic">Daphnia magna</Emphasis> alleviates the food stress caused by the filamentous cyanobacteria

It is assumed that daphnids adjust the filter screen morphology in order to minimize the interference with cyanobacterial filaments. The aim of this study was to investigate the impact of filamentous cyanobacteria (Aphanizomenon gracile Lemmermann, Cylindrospermopsis raciborskii Woloszynska Seenaya et Subba Raju) on the thickness and length of setae of the third pair of thoracic limbs of Daphnia magna. The second objective was to assess whether the setae modifications could improve the performance of daphnids in the presence of cyanobacteria. Three clones of Daphnia magna Straus were cultured with: green algae; green algae with filaments of Cylindrospermopsis; and green algae with filaments of Aphanizomenon. The size and age of animals in the first reproduction cycle as well as the number of offspring were recorded. Setae thickness and length were measured in the central part of each endopodite. Additionally, we analyzed how the changes in setae morphology affect the fitness of experimental animals using the intrinsic rate of population increase calculated with the Euler–Lotka equation. The results showed that the thickness and length of setae increased in the presence of filamentous cyanobacteria. Moreover, cyanobacteria-induced setae thickening was positively correlated to the fitness of daphnids, which may indicate setae thickening as a phenotypic adaptation to cope with food stress caused by filamentous cyanobacteria.     

Persistence of ecto- and ectendomycorrhizal fungi associated with <Emphasis Type="Italic">Pinus montezumae</Emphasis> in experimental microcosms

Ectomycorrhizal (ECM) and ectendomycorrhizal fungal species associated with Pinus montezumae were recorded in 8 year-old trees established in microcosms and compared with those associated with 2 year-old trees, in order to determine their persistence over the long-term. Mycorrhizal root tips were morphologically and anatomically characterized and sequenced. The extension of extramatrical mycelium of ECM fungi with long exploration strategies was evaluated. In total, 11 mycorrhizal species were registered. Seven mycorrhizal species were detected on both 2 and 8 year-old pines: Atheliaceae sp., Rhizopogon aff. fallax, R. aff. occidentalis, Suillus pseudobrevipes, Tuber separans, Wilcoxina mikolae and Wilcoxina rehmii. One species, Thelephora terrestris, was exclusively associated with two year–old seedlings, while Cenococcum geophilum, Pezizaceae sp. and Pyrenomataceae sp. were exclusively found on 8 year-old trees. Atheliaceae sp. was the ECM fungal species that presented the most abundant mycelium. Finally, we report one new fungal species of Pezizaceae occurring as a symbiont of P. montezumae.     

<Emphasis Type="Italic">Cucullanus maldivensis</Emphasis> n. sp. (Nematoda: Cucullanidae) and some other adult nematodes from marine fishes off the Maldive Islands

Marine fishes were collected from off the Maldive Islands in March, 2005. From amongst the material collected, the nematode Cucullanus maldivensis n. sp. is described from the intestine of a lutjanid fish, the black and white snapper Macolor niger (Forsskål). This species is morphologically and biometrically most similar to C. bourdini Petter &; Le Bel, 1992, differing from it principally in the protruding vulval lips, the location of the first pair of pre-anal papillae, the absence of an elevated cloacal region, and having distinctly larger eggs (51–57 × 33–36 μm). Additionally, adult females of the nematodes Procamallanus (Spirocamallanus) sp. and Camallanus sp. from the green jobfish Aprion virescens Valenciennes (Lutjanidae) and the rainbow runner Elegatis bipinnulata (Quoy &; Gaimard) (Carangidae), respectively, were collected. These camallanids are illustrated and measurements are provided, but they were not identified or described in detail as no males were collected.     

To the knowledge of oribatid mites of the genus <Emphasis Type="Italic">Nothrus</Emphasis> (Acari,Oribatida, Nothridae) from Taiwan

Two species of oribatid mites of the genus Nothrus (Oribatida, Nothridae) were collected during an expedition to Taiwan in 2017. The species Nothrus anauniensis Canestrini and Fanzago, 1876 is redescribed and illustrated in detail; the main morphological traits for this species are summarized. A new species Nothrus xuejianensis Ermilov sp. n. is described; it differs from the closest species, Nothrus meakanensis Fujikawa, 1999 by the morphology and length of notogastral setae h₂ and number of subcapitular setae m.     

Two new species of poecilostomatoid copepods symbiotic on the venomous echinoid <Emphasis Type="Italic">Toxopneustes pileolus</Emphasis> (Lamarck) (Echinodermata) from Vietnam

Two new coexisting species of crustacean copepods (Poecilostomatoida) belonging to the echinoid-specific genera Mecomerinx Humes, 1977 (Pseudanthessiidae) and Clavisodalis Humes, 1970 (Taeniacanthidae) found associated with the venomous flower urchin Toxopneustes pileolus (Lamarck) (Echinodermata: Echinoidea: Toxopneustidae) in the South China Sea (Vietnam) are described. The diagnostic features of Mecomerinx ohtsukai n. sp. are: (i) three setae and one aesthetasc on the first segment of antennules; (ii) relatively long caudal ramus; (iii) elongated terminal segment of the antenna; and (iv) two claws on the terminal segment of antenna slightly unequal in length. The taeniacanthid copepod Clavisodalis toxopneusti n. sp. is distinguished from all seven known congeners by having two-segmented endopod of the legs 2–4 and four setae on the distal endopodal segment of the leg 1. This is the first report on copepods associated with echinoids of the genus Toxopneustes Agassiz and the first finding of Mecomerinx as well as taeniacanthid copepods in the South China Sea associated with echinoids.     

Oribatid mites of the superfamily Trizetoidea Ewing, 1917 (Acari,Oribatida) from Peru

Two new species of the oribatid mite superfamily Trizetoidea (Acari, Oribatida) are described from Peru. Rhynchoribates (Rhynchoribatodes) rioyuyapichisensis Ermilov, sp. n. differs from the other species of the subgenus by the long flagelliform notogastral setae. Rhynchoppia puertoincaensis Ermilov, sp. n. is morphologically similar to R. capillata (Balogh, 1963), but differs by the shape and in a greater number of rostral teeth, in the number and a smaller length of notogastral setae, and in the number of genital setae. The genus Rhynchoppia (Balogh 1968) is recorded from the Neotropical Region for the first time, while Rhynchoribates (Rhynchoribatodes) brasiliensis Woas 1986 is new to the fauna of Peru.     

Butyric acid production from red algae by a newly isolated <Emphasis Type="Italic">Clostridium</Emphasis> sp. S1

Objective

To produce butyric acid from red algae such as Gelidium amansii in which galactose is a main carbohydrate, microorganisms utilizing galactose and tolerating inhibitors in hydrolysis including levulinic acid and 5-hydroxymethylfurfural (HMF) are required.

Results

A newly isolated bacterium, Clostridium sp. S1 produced butyric acid not only from galactose as the sole carbon source but also from a mixture of galactose and glucose through simultaneous utilization. Notably, Clostridium sp. S1 produced butyric acid and a small amount of acetic acid with the butyrate:acetate ratio of 45.4:1 and it even converted acetate to butyric acid. Clostridium sp. S1 tolerated 0.5–2 g levulinic acid/l and recovered from HMF inhibition at 0.6–2.5 g/l, resulting in 85–92 % butyric acid concentration of the control culture. When acid-pretreated G. amansii hydrolysate was used, Clostridium sp. S1 produced 4.83 g butyric acid/l from 10 g galactose/l and 1 g glucose/l.

Conclusion

Clostridium sp. S1 produces butyric acid from red algae due to its characteristics in sugar utilization and tolerance to inhibitors, demonstrating its advantage as a red algae-utilizing microorganism.

     

<Emphasis Type="SmallCaps">d</Emphasis>-Xylose fermentation,xylitol production and xylanase activities by seven new species of <Emphasis Type="Italic">Sugiyamaella</Emphasis>

Sixteen yeast isolates identified as belonging to the genus Sugiyamaella were studied in relation to D-xylose fermentation, xylitol production, and xylanase activities. The yeasts were recovered from rotting wood and sugarcane bagasse samples in different Brazilian regions. Sequence analyses of the internal transcribed spacer (ITS) region and the D1/D2 domains of large subunit rRNA gene showed that these isolates belong to seven new species. The species are described here as Sugiyamaella ayubii f.a., sp. nov. (UFMG-CM-Y607^T = CBS 14108^T), Sugiyamaella bahiana f.a., sp. nov. (UFMG-CM-Y304^T = CBS 13474^T), Sugiyamaella bonitensis f.a., sp. nov. (UFMG-CM-Y608^T = CBS 14270^T), Sugiyamaella carassensis f.a., sp. nov. (UFMG-CM-Y606^T = CBS 14107^T), Sugiyamaella ligni f.a., sp. nov. (UFMG-CM-Y295^T = CBS 13482^T), Sugiyamaella valenteae f.a., sp. nov. (UFMG-CM-Y609^T = CBS 14109^T) and Sugiyamaella xylolytica f.a., sp. nov. (UFMG-CM-Y348^T = CBS 13493^T). Strains of the described species S. boreocaroliniensis, S. lignohabitans, S. novakii and S. xylanicola, isolated from rotting wood of Brazilian ecosystems, were also compared for traits relevant to xylose metabolism. S. valenteae sp. nov., S. xylolytica sp. nov., S. bahiana sp. nov., S. bonitensis sp. nov., S. boreocarolinensis, S. lignohabitans and S. xylanicola were able to ferment d-xylose to ethanol. Xylitol production was observed for all Sugiyamaella species studied, except for S. ayubii sp. nov. All species studied showed xylanolytic activity, with S. xylanicola, S. lignohabitans and S. valenteae sp. nov. having the highest values. Our results suggest these Sugiyamaella species have good potential for biotechnological applications.     

Two new species of <Emphasis Type="Italic">Bothriocephalus</Emphasis> Rudolphi, 1808 (Cestoda: Bothriocephalidea) from marine fish off Australia and New Caledonia

Two new species of bothriocephalidean tapeworms, Bothriocephalus australis n. sp. from the flatheads Platycephalus bassensis Cuvier (type host) and P. aurimaculatus Knapp off southern Australia and B. celineae n. sp. from a hybrid serranid Cephalopholis aurantia (Val.) × C. spiloparaea (Val.) from off New Caledonia, are described. B. australis is unique in the possession of the combination of the three characters: an elongate, obliquely situated cirrus-sac; a wide genital atrium surrounded by chromophilic cells; and a well-developed apical disc. B. celineae is typified by the presence of a low number of testes per segment (14–26), forming one or two incomplete longitudinal bands on each side of segment, and the small size of the strobila (total length 24 mm) which consists of less than 100 segments.     

The carabid <Emphasis Type="Italic">Pterostichus melanarius</Emphasis> uses chemical cues for opportunistic predation and saprophagy but not for finding healthy prey

The sentinel prey method can quantify predation pressure in various habitats. Real prey is assumed to more realistically mimic the predator experience but the predator can rarely be identified. Artificial prey made of plasticine may lack real chemical cues, but provides information about predator identity. However, the relationship between predation pressure registered by artificial versus real prey is not clear. We tested the relative attractiveness of artificial caterpillars, and intact, wounded, or dead larvae of the cabbage moth (Mamestra brassicae) for the carabid predator Pterostichus melanarius Illiger (Coleoptera: Carabidae). P. melanarius adults were attracted to dead caterpillars more than to live or wounded ones. Coating artificial caterpillars with caterpillar haemolymph increased their attractiveness. However, predators were not attracted more to healthy, real caterpillars than to “untreated” artificial ones. We conclude that using artificial caterpillars does not underestimate predation pressure by this carabid on healthy caterpillars.