Environmental variability and fisheries: what can models do?

This review is based on 58 climate-fisheries models published over the last 28 years that describe the impacts of fishery pressure and environmental variability on populations and ecosystems and include basic principles of population dynamics. It points out that the incorporation of environmental factors in fishery models has already been done and is of great importance for future models used in the assessment of marine resources. The work is guided by the questions to what extent have these models a) enhanced our understanding of the interrelationships between the environment, the fishery and the state of the exploited resources and b) helped to improve the prediction of population dynamics and the assessment of marine resources. For each of the six most commonly used model categories a case study is critically analyzed. The problems of “breaking relationships” between environmental factors and the biological response used in models, the trade-off between model complexity (realism) and simplicity (data availability) and the potential of multivariate climate indices for forecasting ecosystem states and for use as proxies for combined models are discussed, as are novel non-linear and spatially explicit modeling approaches. Approaches differ in terms of model complexity, use of linear or non-linear equations, number of parameters, forecast time horizon and type of resource modelled. A majority of the models were constructed for fish and invertebrate stocks of the northeast Pacific and the epicontinental seas of the Atlantic, reflecting the advancement of fisheries science in these regions. New, in parts highly complex models and sophisticated approaches were identified. The reviewed studies demonstrate that the performance of fished stocks can better be described if environmental or climatic variability is incorporated into the fisheries models. We conclude that due to the already available knowledge, the greatly enhanced computer power, new methods and recent findings of large-scale climatic/oceanographic cycles, fisheries modeling should progress greatly in the coming years.     

Symbolic boundaries,incorporation policies,and anti-immigrant attitudes: what drives exclusionary policy preferences?

This research empirically approaches symbolic boundary making in the form of individual assent to selective immigration policy. Distinguishing two such types of boundaries, restriction based on immigrant skills and race/religion, we approach the antecedents of such preferences. Do economic or rather cultural concerns about immigration drive boundary making? We furthermore assess whether social boundaries in the form of integration and multicultural policies are of importance. The results obtained from the European Social Survey show that on the individual level, both forms of boundary making are mainly driven by cultural concerns. On the country level, net of several measures of diversity, integration policies dampen skill-related boundaries, while multicultural policies weaken the strength of cultural boundary making along race and religion. These findings expose the political embeddedness of processes of symbolic boundary making into the very policies that approach the respective type of boundary.     

Actin in the nucleus: what form and what for?

Actin is an abundant protein in most nonmuscle cells. It has often been observed in isolated nuclei, yet cytoplasmic contamination was of course initially regarded as the most plausible origin. Numerous studies on nuclear actin appeared in the 1970s and 1980s, but the picture remained rather muddy. The viewpoint at that time was that actin-shown to move freely between cytoplasm and nucleus-was a mere "thermodynamic wanderer," transiently occupying the nucleus. More recently, evidence has been mounting that actin's presence in the nucleus is not simply governed by the laws of diffusion. The same holds true for the finding of various actin-related proteins in the nucleus, and the case for nuclear myosin, specifically myosin I, is now quite convincing. Moreover, the first intimations of functional roles of nuclear actin are now emerging. Here we examine the overall subject from cell biological and chemical perspectives. The major issue is no longer the presence of actin in the nucleus but rather its supramolecular organization, intranuclear locations, and, of course, functions. These issues interface with recent findings that reveal a surprisingly diverse repertoire of actin conformations and oligomer and polymer forms beyond monomeric G-actin and polymeric F-actin. We present ideas for advancing the nuclear actin field and call for a renewed attack on this major problem in cell biology.     

Impact of global warming on viral diseases: what is the evidence?

Global warming is believed to induce a gradual climate change. Hence, it was predicted that tropical insects might expand their habitats thereby transmitting pathogens to humans. Although this concept is a conclusive presumption, clear evidence is still lacking--at least for viral diseases. Epidemiological data indicate that seasonality of many diseases is further influenced by strong single weather events, interannual climate phenomena, and anthropogenic factors. So far, emergence of new diseases was unlinked to global warming. Re-emergence and dispersion of diseases was correlated with translocation of pathogen-infected vectors or hosts. Coupled ocean/atmosphere circulations and 'global change' that also includes shifting of demographic, social, and economical conditions are important drivers of viral disease variability whereas global warming at best contributes.     

Autophagy and apoptosis: what is the connection?

The therapeutic potential of autophagy for the treatment cancer and other diseases is beset by paradoxes stemming from the complexity of the interactions between the apoptotic and autophagic machinery. The simplest question of how autophagy acts as both a protector and executioner of cell death remains the subject of substantial controversy. Elucidating the molecular interactions between the processes will help us understand how autophagy can modulate cell death, whether autophagy is truly a cell death mechanism, and how these functions are regulated. We suggest that, despite many connections between autophagy and apoptosis, a strong causal relationship wherein one process controls the other, has not been demonstrated adequately. Knowing when and how to modulate autophagy therapeutically depends on understanding these connections.     

Sex and death: what is the connection?

A cost of reproduction, where lifespan and fecundity are negatively correlated, is of widespread occurrence. Mutations in insulin/IGF signaling (IIS) pathways and dietary restriction (DR) can extend lifespan in model organisms but do not always reduce fecundity, suggesting that the link between lifespan and fecundity is not inevitable. Understanding the molecular basis of the cost of reproduction will be informed by elucidation of the mechanisms by which DR and IIS affect these two traits.     

Virulence and resistance in malaria: who drives the outcome of the infection?

Theoretical and experimental studies have established the dynamic nature of virulence and that, like all traits, it has evolved. Understanding parasite evolution offers a conceptual framework for diverse fields and can contribute greatly to decision-making in disease control. Recently, Grech et al. investigated the effects of host genotype-by-parasite genotype interactions on the expression of virulence in an artificial rodent-malaria system. They found that both parasite and host effects explained most of the variance in the virulence, resistance and transmission potential. These findings are a major contribution to the emerging debate on the pros and cons of a coevolutionary approach of virulence evolution; they also hold great potential for more effective control strategies.     

Race,ethnicity and disciplinary divides: what is the path forward?

We pose several questions that emerged for us from Valdez and Golash-Boza’s “U.S. Racial and Ethnic Relations in the twenty-first Century.” First, we raise questions about their framing of the problem with current scholarship – are immigration/ethnicity and race scholars talking past each other or are they having more fundamental disagreements? Second, we raise questions about their critique of the “the race literature” – do too many of us ignore questions of agency and inclusion? Finally, we raise questions about the stability and utility of the concepts they deploy (“race” and “ethnicity”) and draw on recent scholarship that has argued that we need new language or frameworks to adequately describe the reality on the ground.     

The manganese/iron-carboxylate proteins: what is what, where are they, and what can the sequences tell us?

The manganese/iron-carboxylate proteins make up a recently discovered group of proteins that contain a heterodinuclear Mn/Fe redox cofactor. The chemical potential of the heterodinuclear metal site is just starting to be characterized, but available data suggest that it may have capabilities for similarly versatile chemistry as the extensively studied diiron-carboxylate cofactor. The presently identified members of the manganese/iron-carboxylate proteins are all sequence homologues of the radical-generating R2 subunit of class I ribonucleotide reductase, canonically a diiron protein. They are also commonly misannotated as such in databases. In spite of the sequence similarity, the manganese/iron-carboxylate proteins form at least two functionally distinct groups, radical-generating ribonucleotide reductase subunits and ligand-binding Mn/Fe proteins. Here, the presently available sequences for the manganese/iron-carboxylate proteins are gathered, grouped, and analyzed. The analysis provides sequence determinants that allow group identification of new sequences on the single-protein level. Key differences between the groups are mapped on the known representative structures, providing clues to the structural prerequisites for metal specificity, cofactor formation, and difference in function. The organisms that encode manganese/iron-carboxylate proteins are briefly discussed; their environmental preference suggests that the Mn/Fe heterodinuclear cofactor is preferred by extremophiles and pathogens with a particularly high relative presence in Archaea.     

Local, among-site, and regional diversity patterns of benthic macroinvertebrates in high altitude waterbodies: do ponds differ from lakes?

In this study we aimed at comparing invertebrate diversity of high altitude lakes and ponds along hierarchical spatial scales. We compared local, among-site, and regional diversity of benthic macroinvertebrates in 25 ponds and 34 lakes in the Tatra Mountains, central Europe. The ponds showed significantly lower local diversity, higher among-site diversity and similar regional diversity than the lakes. The species–area relationships (SAR), habitat heterogeneity, and environmental harshness are assumed as drivers for the local diversity patterns. An ecological threshold separating pond and lake systems emerged at an area of 2 ha, where the SAR pattern changed significantly. Differences in species turnover between these systems were likely driven by greater environmental variability and isolation of the ponds. High altitude ponds neither significantly support greater regional diversity nor higher number of unique taxa than lakes. The higher among-site diversity of ponds relative to lakes highlights the relevance of ponds for regional diversity in mountain areas.     

ROS signaling in the hypersensitive response: When,where and what for?

Plants generally react to the attack of non-host and incompatible host microorganisms by inducing pathogenesis-related (PR) genes and localised cell death (LCD) at the site of infection, a process collectively known as the hypersensitive response (HR). Reactive oxygen species (ROS) are generated in various sub-cellular compartments shortly after pathogen recognition, and proposed to cue subsequent orchestration of the HR. Although apoplast-associated ROS production by plasma membrane NADPH oxidases have been most thoroughly studied, recent observations suggest that ROS are generated in chloroplasts earlier in the response and play a key role in execution of LCD. A model is presented in which the initial outcome of successful pathogen detection is ROS accumulation in plastids, likely mediated by mitogen-activated protein kinases and caused by dysfunction of the photosynthetic electron transport chain. ROS signaling is proposed to spread from plastids to the apoplast, through the activation of NADPH oxidases, and from there to adjacent cells, leading to suicidal death in the region of attempted infection.Key words: biotic stress, chloroplasts, flavodoxin, hypersensitive response (HR), reactive oxygen species (ROS), ROS signaling     

Visceral leishmaniasis: what are the needs for diagnosis, treatment and control?

Visceral leishmaniasis (VL) is a systemic protozoan disease that is transmitted by phlebotomine sandflies. Poor and neglected populations in East Africa and the Indian sub-continent are particularly affected. Early and accurate diagnosis and treatment remain key components of VL control. In addition to improved diagnostic tests, accurate and simple tests are needed to identify treatment failures. Miltefosine, paromomycin and liposomal amphotericin B are gradually replacing pentavalent antimonials and conventional amphotericin B as the preferred treatments in some regions, but in other areas these drugs are still being evaluated in both mono- and combination therapies. New diagnostic tools and new treatment strategies will only have an impact if they are made widely available to patients.     

Statin pharmacogenomics: what have we learned, and what remains unanswered?

PURPOSE OF REVIEW: Statins are widely prescribed and are established as first-line therapy for the primary and secondary prevention of coronary heart disease. Response to treatment varies considerably from person to person; however, inherited traits (genetic variability) may play a central role in this inter-individual variation. The purpose of this review is to summarize recent progress in the research for exploring genetic determinants of clinical efficacy and safety of statin therapy. RECENT FINDINGS: In addition to 41 previous studies of 19 genes, the results of 17 pharmacogenomic studies investigating the relationship between common genetic variants and response to statin therapy in terms of lipid responses, clinical outcomes, and adverse events have been reported since January 2004 - 15 candidate genes related to pharmacodynamics and three to pharmacokinetics of statins. These reported data suggest that genetic variations influencing intestinal cholesterol absorption, cholesterol production, and lipoprotein catabolism may all play a role in modulating responsiveness, as well as genes involved in drug metabolism of statins. They also suggest that combined analysis of multiple variants in several genes, all of which have possible functional relations, is more likely to give significant results, especially when being performed with a larger number of participants. SUMMARY: Pharmacogenomic studies of statin therapy will provide a better picture as to who is most likely and least likely to benefit from treatment, which results in more individualized management of coronary artery disease.