burnr: Fire history analysis and graphics in R

We developed a new software package, burnr, for fire history analysis and plotting in the R statistical programming environment. It was developed for tree-ring fire-scar analysis, but is broadly applicable to other event analyses (e.g., avalanches, frost rings, or culturally modified trees). Our new package can read, write, and manipulate standard tree-ring fire history FHX files, produce fire—demography charts, calculate fire frequency and seasonality statistics, and run superposed epoch analysis (SEA). A key benefit of burnr is that it enables automation of analyses and plotting, especially for large data sets. The package also facilitates creative plotting, mapping, and analyses when combined with the thousands of packages available in R. In this paper, we describe the basic functionality of burnr and introduce users to fire history analyses in R.     

Responses of Pinus resinosa in Newfoundland to wildfire

Abstract. Natural Pinus resinosa (red pine) stands in Newfoundland are restricted to 22 small, dry, nutrient-poor sites. A short wildfire cycle (15 - 30 yr) of both surface and crown fire regulates stand perimeters and is the main factor in regulating stand development. At the nucleus of current stands < 100 yr old, a few trees > 200 yr occur, usually showing multiple fire scars. Stem char heights confirmed an increased flammability of the stand and tree mortality for fires moving in the upslope position, as well as for mixed Pinus resinosa-Picea mariana stands. All P. resinosa stands are severely nutrient-deficient. Leaf concentrations of N, P and K were below or near the reported critical values. Nutrient concentrations were highest three months after a surface fire, but dropped considerably one year later. A gradual increase to near post-fire levels is achieved four years after fire. Foliar nutrient concentrations were positively correlated with average width of the annual rings. Aspects of the ericaceous understory dynamics and its relation to P. resinosa regeneration are also discussed.     

Fire history of a prairie/forest boundary: more than 250 years of frequent fire in a North American tallgrass prairie

Questions: Most modern fire‐prone landscapes have experienced disruptions of their historic fire regimes. Are the primary tallgrass prairies of the Flint Hills reflective of a history of continuous fire occurrence? Did fire frequency, severity, size and seasonality change in connection with changes in land use? Has fire occurrence been related to drought conditions? Location: Edges of Cross Timbers forest stands at the Tallgrass Prairie Preserve (TGPP) in the Flint Hills of Osage County, Oklahoma, USA. Methods: Cross‐sections of 76 Quercus stellata were collected from Cross Timbers stands at or near the grassland edge in the TGPP. Dendrochronological methods were used to identify years of formation for tree rings and fire scars. Superposed epoch analysis was used to evaluate the effect of drought conditions on fire occurrence. Results: Fires were recorded in 46.6% of the years between 1729 and 2005. In 41 cross‐sections at one site, the mean fire interval between 1759 and 2003 was 2.59 years, with fire interval decreasing from a mean fire interval of 3.76 years in the early part of the record to 2.13 years in modern times. No extended periods without fire were recorded in the study area. Drought conditions had no significant effect on fire occurrence. Conclusions: In contrast with many fire‐prone landscapes worldwide, the prairies of the Flint Hills have experienced no recent fire suppression or exclusion. Changes in fire frequency mark transitions in land use, primarily from being traditionally used by Native Americans to being managed for cattle production.     

A fire history of a subalpine forest in south-eastern Wyoming, USA

Fire history was determined for part of the Routt‐Medicine Bow National Forest in south‐eastern Wyoming using fire‐scar and age‐class analysis. A composite chronology of fire events was used to determine mean fire intervals (MFI) for pre‐EuroAmerican settlement, EuroAmerican settlement (before 1868 ad ), EuroAmerican settlement and modern (after 1912) periods, for all fires and stand‐replacing fires. Point‐scale MFI was also determined using grand means from individual trees. Stand‐replacing fires were reconstructed to determine fire rotation. MFI for the entire time period is 5.5–8.4 years. MFI decreased from 9.3 to 15.7–1.9–2.9 years from the preto post‐EuroAmerican settlement periods, and increased during the modern period. Point‐scale MFIs are longer than MFI of the study area. Fire rotation is 182 years for the total period of record, but increased from 127 years during the pre‐EuroAmerican settlement period to 170 years during the EuroAmerican settlement period. Fire rotation during the modern period dramatically increased to 27,035 years. Results suggest fire suppression may have influenced the fire regime. Comparison of regional fire events with fire events from this study indicate regional weather has an important influence on Rocky Mountain fire regimes.     

The centenary pluviometer: A pioneer dendrochronological study in South America

In 1931, Krebs and Fischer, published El pluviómetro secular (The centenary pluviometer) an analysis of tree rings of Prosopis caldenia Burkart (caldén) in the central Argentinean Pampas which, according to the date, may be considered as one of the first dendrochronological studies in South America.     

Elevational changes in climate response of Pinus nigra pallasiana tree-rings on the Crimean Peninsula

Climate change is most evident on the periphery of species distribution ranges. Using four tree-ring chronologies, we identified the most important climatic factors influencing the radial growth of black pine growing along an elevational transect on the eastern slope of Mount Ai-Petri (Crimean Peninsula), at the northernmost part of its range. The relationship between tree-ring width and climate was determined using response function analysis. Results indicate an increase in correlation between radial growth and hydrothermal data along the transect: from a near absence of any correlation at the lowest elevation to r = 0.6 at the top. This change in response was not only caused by differences in climatic variables, but also related to topography, soil, and bedrock features. The currently ongoing aridization may lead to a decrease in the stability and persistence of black pine stands only in the upper parts of Mount Ai-Petri.     

基于树轮火疤塔河蒙克山樟子松林火灾的频度分析

大兴安岭地区是我国重要林区,又是林火的多发区,林火是森林生态系统中的重要干扰因子,对整个森林生态系统结构、功能和动态都有重要影响。樟子松为欧洲赤松的一个变种,在我国主要分布于大兴安岭地区。近年来,频繁的森林火灾造成樟子松林大面积减少。因此,重建大兴安岭樟子松林火历史,掌握樟子松林火灾规律已显得十分迫切。在大兴安岭北部塔河县蒙克山林场采集了11棵樟子松火疤圆盘,利用树木年轮年代学方法重建了大兴安岭北部塔河县蒙克山樟子松林的火灾历史,获得1个以树轮年代学为基础的樟子松火疤年表。利用火历史分析软件得到蒙克山樟子松林火灾间隔期和轮回期分别为24.8a和33a。由火疤年表得到的蒙克山樟子松林火灾历史大致可分为3个历史时期:满清中期(1723-1859年)、清末民国时期(1860-1949年)和建国后(1950年至今)。41个火疤记录中早早材火(E)所占比例最大,占全部火疤数目的61%,晚材火(A)、未确定火(U)和休眠季节火(D)则相对较少。大区域性火灾事件平均间隔期为32.5a,最大火灾间隔期为61a。本研究为进一步探究大兴安岭地区寒温带针叶林火灾历史的时间和空间格局及其之间的联系提供了基础数据。     

Fire in the Suburbs: Ecological Impacts of Prescribed Fire in Small Remnants of Longleaf Pine (Pinus palustris) Sandhill

Abstract Logging, fire suppression, and urbanization have all contributed to the serious decline and fragmentation of Pinus palustris (longleaf pine) ecosystems in the southeastern United States. Effective management of the remaining patches of these pyrogenic communities must incorporate periodic low‐intensity fires, even where they are located on private lands in populated urban and suburban areas. To explore the effects of fire and its potential use for restoration and management of small fragments surrounded by suburban development, we conducted growing season prescribed fires in remnant longleaf pine sandhill patches in the suburbs of Gainesville, Florida. Density and composition of hardwoods were surveyed pre‐burn and 1 and 9 months post‐burn. Woody stem density decreased in the burn plots, predominantly in the smaller size classes. Flowering responses of forbs and small shrubs were surveyed six times post‐burn for 1 year. Overall, the burns did not yield greater densities of flowering stems, but burn patches had higher species richness and diversity than control patches. In addition, there were consistently greater numbers of “showy flowered” sandhill species in flower in burn patches relative to controls. The results of this research demonstrate that prescribed fire can be used for restoration and management of small remnants of longleaf pine sandhill in suburban neighborhoods. It is also clear that although a single prescribed burn can be effective, it will take more than one burn to attain desired restoration goals in degraded longleaf remnants.     

Soil seed banks in Pinus ponderosa forests in Arizona: Clues to site history and restoration potential

Question: How does the relationship between the viable soil seed bank species composition and the above‐ground vegetation in northern Arizona Pinus ponderosa forests differ under varying historical land use disturbances (low, intermediate, high)? Is above‐ground vegetation correlated to the viable soil seed bank immediately following soil disturbance from restoration thinning treatments? Location: Northern Arizona, USA. Methods: Soil seed bank samples were taken along replicated transects and collected with a 5‐cm diameter bulk density hammer. Samples included a 5 ‐cm diameter O‐horizon sample (at varying depths) plus the underlying mineral soil to a depth of 5 cm. The seedling emergent method was used to quantify seed bank species composition and density. The herbaceous and shrub plant community was quantified along the same transects using the point intercept method. Results: Early‐successional or ruderal species were common in the soil seed bank at all three disturbance sites. Non‐native species, notably Verbascum thapsus, were more numerous (up to 940 seeds/m²) under high disturbance with overgrazing and logging, and less common or absent under low disturbance. Most viable seeds were found in the O‐horizon and the upper 5 cm of mineral soil; there was little correlation between species in the soil seed bank and the above‐ground vegetation. Conclusions: We recommend that restoration plans be geared toward minimizing activities, such as severe soil disturbance, that may promote the spread of non‐native invasive species, and that manual seeding be explored as an option to restore plant species diversity and abundance.     

Growth response to climate and drought in <Emphasis Type="Italic">Pinus nigra</Emphasis> Arn. trees of different crown classes

Tree-ring chronologies were examined to investigate the influence of climate on radial growth of Pinus nigra in southeastern Spain. We addressed whether drought differentially affected the ring-widths of dominant and suppressed trees and if our results supported the hypothesis that, in a Mediterranean climate, suppressed conifer trees suffer greater growth reductions than dominant trees. Climate–growth relationships were analyzed using response and correlation functions, whereas the effect of drought on trees growth was approached by superposed epoch analysis in 10 dry years. A cool, wet autumn and spring, and/or mild winter enhanced radial growth. Latewood was the most sensitive ring section in both kinds of trees and it was primarily influenced by current year precipitations. Earlywood was mostly influenced by climatic conditions previous to the growing season. In general, May was the most influential month. Pinus nigra was shown to be very drought sensitive tree in the study area. Tree-rings in suppressed trees showed lower growth reductions caused by drought than those of dominant trees. However, dominant trees recovered normal growth faster. Dominant trees showed a more plastic response, and suppression appeared to reduce the effect of climate on tree radial growth. Some possible causes for these effects are discussed. Our results support the essential role of the balance between light and moisture limitations for plant development during droughts and show that it is not appropriate to generalize about the way in which suppression affects climate-growth relationship in conifers.     

Evaluation of the non-climatic (age-related) trends of stable oxygen and carbon isotopes in Swiss stone pine (Pinus cembra L.) tree rings from the Eastern Carpathians,Romania

The presence, magnitude, and duration of age and/or size-related trends in the stable isotopes in tree-ring cellulose time series has been a subject of scientific debate. Where present, their evaluation and removal are key to the development of robust climate calibrations and reconstructions, especially in the low-frequency domain and where sample replication levels are low. Where reported, results suggest that the age/size/height-related trend of stable oxygen (δ¹⁸O) and carbon (δ¹³C) isotope compositions in tree-ring cellulose may vary according to the tree species and the individual tree location. For this reason, it is important when developing long palaeoclimate reconstructions for a new species, geographical region or ecological setting to perform studies to investigate non-climatic (age-related) trends. This study evaluates the ontogenetic pattern in the δ¹⁸O and δ¹³C data in Swiss stone pine trees from the Eastern Carpathians, Romania. For this, we used a new multi-centennial dataset consisting of 5 living and 10 relict Swiss stone pine samples collected from the Eastern Carpathians, which were annually resolved for δ¹⁸O and δ¹³C composition. Age-related trends were evaluated using the conventional “slope of the mean” approach as well as the “mean of the slope” method. The results suggest that neither the traditional “slope-of-the mean” nor the “mean-of-the-slope” approach indicates a persistent linear trend in the Swiss stone pine δ¹⁸O data, while for the δ¹³C data a systematic enrichment in ¹³C was observed over a < 40 year-long period after germination. Despite the limited sample size of this developing dataset these findings help to inform more detailed analyses and future sampling strategies in the Eastern Carpathian Swiss stone pine stands.     

Effects of long-term fire exclusion on tree species composition and stand structure in an old-growth Pinus palustris (Longleaf pine) forest

Frequent fire is an integral component of longleaf pine ecosystems, creating environmental conditions favoring survival and growth of juvenile pines. This study examined stand structure, species composition, and longleaf pine regeneration in an old-growth tract of longleaf pine forest (Boyd Tract) experiencing long-term (>80 yr) fire exclusion in the Sandhills of North Carolina. Sampling of woody stems (i.e., 2.5 cm diameter at breast height) and tallies of longleaf pine seedlings were carried out in plots established randomly on upland, mesic areas and lowland, xeric areas within the Boyd Tract. Dominant woody species in mesic plots were black oak, hickories, and large, sparse longleaf pines. Xeric plots had high densities of turkey oak with the large longleaf pines, as well as higher frequencies of smaller longleaf stems. These differences between areas were associated with higher clay content of upland soils and higher sand content of lowland soils. Age-class frequency distributions for fire-suppressed longleaf pine following the last wildfire at the Boyd Tract approximately 80 yr ago contrasted sharply with data from an old-growth longleaf tract in southern Georgia (Wade Tract) that has been under a long-term frequent fire regime. Post-burn recruitment for the Boyd Tract wildfire appears to have been initially high on both site types. Longleaf pine recruitment diminished sharply on the mesic site, but remained high for 60 yr on the xeric site. Currently, longleaf pine regeneration is minimal on both site types; several plots contained no seedlings. Sharp contrasts in longleaf pine dominance and stand structure between the Boyd and Wade Tracts demonstrate the importance of large-scale disturbance, especially hurricanes and fire, in shaping the structure and function of longleaf pine ecosystems of the southeastern United States. In particular, long-term exclusion of fire on the Boyd Tract has altered stand structure dramatically by permitting hardwoods to occupy at high densities the characteristically large gaps between longleaf stems that are maintained by fire and other disturbances.     

Structural attributes,tree-ring growth and climate sensitivity of Pinus nigra Arn. at high altitude: common patterns of a possible treeline shift in the central Apennines (Italy)

European black pine (Pinus nigra ssp. nigra Arnold) encroachment at increasing elevation has been analyzed at four treeline ecotones of the central Apennines (Italy). The study sites are located along a North-South gradient of 170 km across Marche and Abruzzo regions in Central Italy. The aims of this study were: (i) to detect possible common patterns of structural attributes of black pine regeneration at the treeline ecotone; (ii) to date the seedlings germination and (iii) to assess the climate influence on the pine upward encroachment process also using intra-annual density fluctuations (IADFs) in tree-rings. We sampled 658 encroached black pine trees above the current treeline to the mountain top. All individuals were mapped and their basal stem diameter, total height, annual height increments and other structural attributes measured. One increment core was extracted from stem base of most samples for cambial age determination and detection of intra-annual density fluctuations (IADF). At two sites we also extracted cores at DBH from forest trees to assess climate–growth relationships of black pine. We used multivariate analysis (PCA) to explore the correlation structure of the main tree attributes, regression analysis to relate radial and height increment and dendroclimatic analysis to assess the influence of climate on tree growth and IADF formation.Most black pine trees were located at high altitude and their structural attributes were similar at the four sites where the pine encroachment process started between 30 and 40 years ago featuring similar germination peaks and growth patterns. Black pine is particularly sensitive to maximum temperatures and IADF occurred in mid-late summer with highest frequency peaks between 2003 and 2004. The pine encroachment process, besides the differences of environmental features and land use histories of the four study sites, appears synchronic and spatially diffused. Consistent tree-growth dynamics and the species adaptation to a warming climate are signals envisaging a possible treeline upward shift.     

Three centuries of fire in montane pine‐oak stands on a temperate forest landscape

Question: What was the role of fire in montane pine‐oak (Pinus‐Quercus) stands under changing human land uses on a temperate forest landscape in eastern North America? Location: Mill Mountain in the central Appalachian Mountains, Virginia, US. Methods: A dendroecological reconstruction of fire history was generated for four stands dominated by xerophytic pine and oak species. The fire chronology began under presettlement conditions following aboriginal depopulation. Subsequent land uses included European settlement, iron mining, logging, and US Forest Service acquisition and fire protection. Results: Fires occurred approximately every 5 years until 1930 without any evidence of a temporal trend in fire frequency. Burning ceased after 1930. Area‐wide fires affecting multiple pine stands were common, occurring at intervals of approximately 16 years. Most living pines became established during the late 1800s and early 1900s. Dead pines indicated that an older cohort established ca. 1730. Most hardwoods were established between the 1920s and 1940s. Conclusions: Except for fire protection, changes in land use had no discernible influence on fire frequency. Lightning ignitions and/or large fire extent may have been important for maintaining frequent burning in the 1700s, while fuel recovery may have constrained fire frequency during later periods. The disturbance regime appears to be characterized by frequent surface fires and occasional severe fires, insect outbreaks or other disturbances followed by pine recruitment episodes. Industrial disturbances appear to have had little influence on the pine stands. The greatest impact of industrial society is fire exclusion, which permitted hardwood establishment.     

Species-specific growth-climate responses of Dahurian larch (Larix gmelinii) and Mongolian pine (Pinus sylvestris var. mongolica) in the Greater Khingan Range,northeast China

Responses of tree growth to climate are usually spatially heterogeneous. Besides regionally varying external environments, species specificity is a crucial factor in determining said spatial heterogeneity. A better understanding of this species specificity would improve our estimations of the warming effects on forests. In this study, we selected two widely-distributed boreal conifers, Dahurian larch (Larix gmelinii) and Mongolian pine (Pinus sylvestris var. mongolica), to compare their growth-climate responses, including long-term growth-climate correlations and short-term growth resilience to drought. We sampled 160 trees and 481 tree-ring cores from the two species in two pure and two mixed forests, located in the Greater Khingan Range, northeast China. We found that Dahurian larch was generally positively correlated with spring temperature and negatively correlated with summer temperature. In contrast, Mongolian pine was more sensitive to summer moisture. Our results suggest that the main climatic limitations were low spring temperatures for Dahurian larch and summer moisture deficits for Mongolian pine. Dahurian larch represented higher growth resistance to drought, while Mongolia pine represented higher recovery. Based on this, we inferred that Dahurian larch was more vulnerable to extreme droughts, while Mongolian pine was more vulnerable to frequent droughts. We also demonstrated the effects of forest type on growth-climate responses. The negative effects of summer temperatures on Mongolian pine seemed to be more significant in mixed forests. As warming continued, Mongolian pine in this area would suffer severer moisture deficits, especially when coexisting with Dahurian larch. Our results suggest that Dahurian larch gained an advantage in the competition with Mongolian pine during high moisture stress. Driven by the warming trends, the species specificity in growth response would ultimately promote the separation of the two species in distribution. This study will help improve our estimations of the warming effects on forests and develop more species-targeted forest management practices.     

Assessing the effect of management changes and environmental features on the spatio- temporal pattern of fire in an African Savanna: Fire spatio-temporal pattern

Spatio-temporal variability of the fire regime in the Kruger National Park (KNP) has been analyzed for the 1957–2011 period. Generalized linear mixed models have been used to assess the variability of fire metrics, such as the burnt area, the fire frequency and intensity for the entire area as well as for the main environmental classification systems (geology, soil, vegetation) and fire management zones. This analysis supports the hypothesis that the spatial pattern of fire regime is strongly influenced by the environmental template defined by climatic, geological, pedological and vegetation features. Moreover, contrary to some previous studies, together with the precipitation trend, fire management changes had a significant role in determining the temporal variability of the fire regime at the scale of KNP, particularly regarding the burnt area and the fire frequency.The complex interaction between the environmental template and management in determining the variability of the fire regime, as underscored by our study, defends the merit of adopting an adaptive planning/management based approach supported by quantitative analytic tools.     

Fire regimes and forest changes in mid and upper montane forests of the southern Cascades, Lassen Volcanic National Park, California, U.S.A.

Aim Spatial and temporal variation in fire regime parameters and forest structure were assessed. Location A 2630‐ha area of mid‐ and upper montane forest in Lassen Volcanic National Park (LVNP). Methods Two hypotheses were tested concerned with fire‐vegetation relationships in southern Cascades forests: (1) fire regime parameters (return interval, season of burn, fire size, rotation period) vary by forest dominant, elevation and slope aspect; and (2) fire exclusion since 1905 has caused forest structural and compositional changes in both mid‐ and upper montane forests. The implications of the study for national park management are also discussed. Results Fire regime parameters varied by forest compositional group and elevation in LVNP. Median composite and point fire return intervals were shorter in low elevation Jeffrey pine (Pinus jeffreyi) (JP) (4–6 years, 16 years) and Jeffrey pine–white fir (Abies concolor) (JP‐WF) (5–10 years, 22 years) and longer in high elevation red fir (Abies magnifica)— western white pine (Pinus monticola) (RF‐WWP) forests (9–27 years, 70 years). Median fire return intervals were also shorter on east‐facing (6–9 years, 16.3 years) and longer on south‐ (11 years, 32.5 years) and west‐facing slopes (22–28 years, 54‐years) in all forests and in each forest composition group. Spatial patterns in fire rotation length were the same as those for fire return intervals. More growing season fires also occurred in JP (33.1%) and JP‐WF (17.5%) than in RF‐WWP (1.1%) forests. A dramatic decline in fire frequency occurred in all forests after 1905. Conclusions Changes in forest structure and composition occurred in both mid‐ and upper montane forests due to twentieth‐century fire exclusion. Forest density increased in JP and JP‐WF forests and white fir increased in JP‐WF forests and is now replacing Jeffrey pine. Forest density only increased in some RF‐WWP stands, but not others. Resource managers restoring fire to these now denser forests need to burn larger areas if fire is going to play its pre‐settlement role in montane forest dynamics.