Sierra Nevada mountain lake microbial communities are structured by temperature,resources and geographic location

Warming, eutrophication (nutrient fertilization) and brownification (increased loading of allochthonous organic matter) are three global trends impacting lake ecosystems. However, the independent and synergistic effects of resource addition and warming on autotrophic and heterotrophic microorganisms are largely unknown. In this study, we investigate the independent and interactive effects of temperature, dissolved organic carbon (DOC, both allochthonous and autochthonous) and nitrogen (N) supply, in addition to the effect of spatial variables, on the composition, richness, and evenness of prokaryotic and eukaryotic microbial communities in lakes across elevation and N deposition gradients in the Sierra Nevada mountains of California, USA. We found that both prokaryotic and eukaryotic communities are structured by temperature, terrestrial (allochthonous) DOC and latitude. Prokaryotic communities are also influenced by total and aquatic (autochthonous) DOC, while eukaryotic communities are also structured by nitrate. Additionally, increasing N availability was associated with reduced richness of prokaryotic communities, and both lower richness and evenness of eukaryotes. We did not detect any synergistic or antagonistic effects as there were no interactions among temperature and resource variables. Together, our results suggest that (a) organic and inorganic resources, temperature, and geographic location (based on latitude and longitude) independently influence lake microbial communities; and (b) increasing N supply due to atmospheric N deposition may reduce richness of both prokaryotic and eukaryotic microbes, probably by reducing niche dimensionality. Our study provides insight into abiotic processes structuring microbial communities across environmental gradients and their potential roles in material and energy fluxes within and between ecosystems.     

Bee communities (Hymenoptera: Apoidea) of small Iowa hill prairies are as diverse and rich as those of large prairie preserves

Natural small, xeric hill prairies in forested landscapes throughout the Midwest United States often contain high diversity and unique species of some organisms because of their unusual landscape context and microclimate. We measured the diversity, richness, and abundance of the bee communities of five hill prairies located in northeastern Iowa and we compared these to values for large prairie preserves in northwestern Iowa, using a Monte Carlo resampling approach to standardize sampling effort between habitat types. We also measured the diversity and richness of the flowering forb communities at the hill prairies and we quantified percentage of the landscape at a 1 km radius in different landscape elements. Bee diversity at the five hill prairies spanned the range of diversity values for large prairies preserves, so although the hill prairies are small (<5 ha), their bee communities are not uniformly depauparate compared to larger western prairie preserves. Bee diversity was significantly related to flowering forb diversity, and may have been influenced by landscape features within 1 km—particularly the percentage of agricultural row crops and open water, which may negatively affect bee diversity at the sites. Iowa’s hill prairie bee communities were largely composed of widespread eastern species, although about 10% of the bee species have more northern or western ranges and appear to be taking advantage of the region’s unique habitat features. Given the dependence of the bee communities on the plant diversity of the sites, management of the plant community to maintain its diversity will also likely benefit bee diversity.     

Primate communities are structured more by dispersal limitation than by niches

1.?A major goal in community ecology is to identify mechanisms that govern the assembly and maintenance of ecological communities. Current models of metacommunity dynamics differ chiefly in the relative emphasis placed on dispersal limitation and niche differentiation as causal mechanisms structuring ecological communities. Herein we investigate the relative roles of these two mechanisms in structuring primate communities in Africa, South America, Madagascar and Borneo. 2.?We hypothesized that if dispersal limitation is important in structuring communities, then community similarity should depend on geographical proximity even after controlling for ecological similarity. Conversely, if communities are assembled primarily through niche processes, then community similarity should be determined by ecological similarity regardless of geographical proximity. 3.?We performed Mantel and partial Mantel tests to investigate correlations among primate community similarity, ecological distance and geographical distance. Results showed significant and strongly negative relationships between diurnal primate community similarity and both ecological similarity and geographical distance in Madagascar, but significant and stronger negative relationships between community similarity and geographical distance in African, South American and Bornean metacommunities. 4.?We conclude that dispersal limitation is an important determinant of primate community structure and may play a stronger role in shaping the structure of some terrestrial vertebrate communities than niche differentiation. These patterns are consistent with neutral theory. We recommend tests of functional equivalence to determine the extent to which neutral theory may explain primate community composition.     

Compositional divergence and convergence in local communities and spatially structured landscapes

Community structure depends on both deterministic and stochastic processes. However, patterns of community dissimilarity (e.g. difference in species composition) are difficult to interpret in terms of the relative roles of these processes. Local communities can be more dissimilar (divergence) than, less dissimilar (convergence) than, or as dissimilar as a hypothetical control based on either null or neutral models. However, several mechanisms may result in the same pattern, or act concurrently to generate a pattern, and much research has recently been focusing on unravelling these mechanisms and their relative contributions. Using a simulation approach, we addressed the effect of a complex but realistic spatial structure in the distribution of the niche axis and we analysed patterns of species co-occurrence and beta diversity as measured by dissimilarity indices (e.g. Jaccard index) using either expectations under a null model or neutral dynamics (i.e., based on switching off the niche effect). The strength of niche processes, dispersal, and environmental noise strongly interacted so that niche-driven dynamics may result in local communities that either diverge or converge depending on the combination of these factors. Thus, a fundamental result is that, in real systems, interacting processes of community assembly can be disentangled only by measuring traits such as niche breadth and dispersal. The ability to detect the signal of the niche was also dependent on the spatial resolution of the sampling strategy, which must account for the multiple scale spatial patterns in the niche axis. Notably, some of the patterns we observed correspond to patterns of community dissimilarities previously observed in the field and suggest mechanistic explanations for them or the data required to solve them. Our framework offers a synthesis of the patterns of community dissimilarity produced by the interaction of deterministic and stochastic determinants of community assembly in a spatially explicit and complex context.     

Urban nectarivorous bird communities in Cape Town,South Africa,are structured by ecological generalisation and resource distribution

Biological communities are increasingly faced with novel urban habitats and their response may depend on a combination of biological and habitat traits. The response of pollinator species to urban habitats are of particular importance because all species involved in the pollination mutualism may be affected. Nectarivorous bird communities worldwide show varying tolerances to urban areas, but studies from Africa are lacking. We investigated nectarivorous bird communities in a medium‐sized South African city and asked which biological and garden traits best predict the community assembly of specialist and opportunistic nectarivorous birds. Information was collected on garden traits and the frequency of nine nectarivorous bird species for 193 gardens by means of a questionnaire. Information on biological traits of birds was obtained from published literature. Habitat generalism and tree nesting were identified as the most important biological traits influencing bird occurrence in gardens. A greater diversity of indigenous bird‐pollinated plants and the presence of sugar water feeders increased the numbers of nectar specialist birds and species richness of nectarivorous birds. While bird baths increased the species richness of nectar specialist birds, opportunistic birds’ urban adjustment was further facilitated by large vegetated areas in gardens and limited by the distance to the nearest natural habitat. In conclusion, though some biological traits and dispersal barriers seem to limit urban adjustment, a combination of natural and artificial nectar resource provisioning could facilitate this adjustment.     

Flower visitor communities are similar on remnant and reconstructed tallgrass prairies despite forb community differences

One common goal of habitat restoration and reconstruction is to reinstate the biodiversity found at intact reference sites. However, few researchers have examined whether these practices reinstate communities of flower‐visiting insects. This is unfortunate, as anthropogenically mediated declines in flower visitors, including bees (the primary pollinators for most terrestrial ecosystems), beetles, flies, and butterflies, have been reported worldwide. Biodiversity declines may be especially severe in North America's tallgrass prairie, a once‐vast grassland that has experienced severe destruction and degradation due to agricultural conversion. As such, we assessed the structure of forb and flower‐visiting insect communities as a whole and two subsets of the flower visitor community—bees and phytophagous beetles—across five tallgrass prairie remnants and five reconstructed prairies (former crop fields) in Kansas from 2013 to 2015. Remnant prairies had significantly higher forb diversity and differed significantly in forb composition, compared to reconstructed prairies. Despite the dissimilarities in forb community structure, there were no differences in flower visitor diversity or abundance between remnants and reconstructed prairies. However, when considered separately, bee communities exhibited significantly greater variability in composition on reconstructed prairies, likely due to the abundance of generalist bee species visiting non‐native legumes at two reconstructed prairies. Our work provides evidence that prairie habitat reconstruction is a valuable tool for reestablishing flower‐visiting insect communities and also emphasizes the considerable role that non‐native species may play in structuring grassland plant–bee interactions.     

Integrating local plant resources and habitat management

The use of wild plant resources as a source of basic needs is an important aspect of multiple-use of land in much of Africa, ranging from vegetation with a low species diversity, high biomass production and resilience to harvesting (e.g.Phragmites reedbeds,Cymbopogon grasslands) through to vegetation with a high diversity of species (and plant life-forms), with a multiple of uses and often low resilience to resource harvesting (e.g. medicinal plants, pole cutting, fuelwood from Afro-montane forest). Complexity and costs of managing sustainable use of wild populations increase markedly with an increasing number of uses and resource users. It is suggested that if the primary objective of core conservation areas is accepted to be the maintenance of habitat and species diversity, then the limited money and manpower available for management of core conservation areas in southern Africa limits sustainable harvesting use of plant resources to low diversity, low conservation priority vegetation types or encroaching species. For high diversity, high conservation priority sites such as Afro-montane or Coastal evergreen forest, the emphasis must be on providing alternative sources of supply to resource users outside of core areas. Botanical gardens staff, with their horticultural experience, can play a very important role through bulking up material for supply to small farmers, herbalists and introducing additional species for agro-forestry. Botanical gardens can play a greater role in the establishment of field gene banks andex situ conservation of vulnerable species. They can also provide a valuable educational and research role on mass production techniques to boost local stocks of threatened and commercially valuable species for cultivation by local people, whether farmers or specialist users (e.g. herbalists) in the country of origin as a means of generating employment and restoring local self-sufficiency.     

Microbial communities in terrestrial surface soils are not widely limited by carbon

Microbial communities in soils are generally considered to be limited by carbon (C), which could be a crucial control for basic soil functions and responses of microbial heterotrophic metabolism to climate change. However, global soil microbial C limitation (MCL) has rarely been estimated and is poorly understood. Here, we predicted MCL, defined as limited availability of substrate C relative to nitrogen and/or phosphorus to meet microbial metabolic requirements, based on the thresholds of extracellular enzyme activity across 847 sites (2476 observations) representing global natural ecosystems. Results showed that only about 22% of global sites in terrestrial surface soils show relative C limitation in microbial community. This finding challenges the conventional hypothesis of ubiquitous C limitation for soil microbial metabolism. The limited geographic extent of C limitation in our study was mainly attributed to plant litter, rather than soil organic matter that has been processed by microbes, serving as the dominant C source for microbial acquisition. We also identified a significant latitudinal pattern of predicted MCL with larger C limitation at mid- to high latitudes, whereas this limitation was generally absent in the tropics. Moreover, MCL significantly constrained the rates of soil heterotrophic respiration, suggesting a potentially larger relative increase in respiration at mid- to high latitudes than low latitudes, if climate change increases primary productivity that alleviates MCL at higher latitudes. Our study provides the first global estimates of MCL, advancing our understanding of terrestrial C cycling and microbial metabolic feedback under global climate change.     

Role of nesting resources in organising diverse bee communities in a Mediterranean landscape

Abstract.  1. The habitat components determining the structure of bee communities are well known when considering foraging resources; however, there is little data with respect to the role of nesting resources.
2. As a model system this study uses 21 diverse bee communities in a Mediterranean landscape comprising a variety of habitats regenerating after fire. The findings clearly demonstrate that a variety of nesting substrates and nest building materials have key roles in organising the composition of bee communities.
3. The availability of bare ground and potential nesting cavities were the two primary factors influencing the structure of the entire bee community, the composition of guilds, and also the relative abundance of the dominant species. Other nesting resources shown to be important include availability of steep and sloping ground, abundance of plant species providing pithy stems, and the occurrence of pre-existing burrows.
4. Nesting resource availability and guild structure varied markedly across habitats in different stages of post-fire regeneration; however, in all cases, nest sites and nesting resources were important determinants of bee community structure.     

Spider communities in urban green patches and their relation to local and landscape traits

Urbanization and urban landscape characteristics greatly alter plant and animal species richness and abundances in negative and positive directions. Spiders are top predators, often considered to be sensitive to habitat alteration. Studies in urban environments frequently focus on ground-dwelling spiders or on spiders in built structures, leaving aside foliage spiders. Effects of habitat, landscape type and structure and local characteristics on spider species composition, richness and relative abundance were evaluated in urban green patches in a temperate city of South America. We also assess whether Salticidae could be an indicator group for the broader spider community in the urban environment. Spiders were sampled with a G-VAC (aspirator) in urban green patches in Córdoba city, Argentina, in urban, suburban and exurban habitats (18 sites; six per habitat) and local and landscape traits were assessed. Overall, the exurban was richer than the urban habitat, however, at the site level Salticidae richness and abundance (but not the total spider assemblage) were significantly lower in urban sites. Species composition moderately differed between urban and exurban sites. Results indicate that on urban green spaces a low impervious surface cover, a coverage of trees, herbaceous vegetation and a vertical structure of vegetation at least up to 1 m in height contribute to higher richness and abundance of spiders, Salticidae being more sensitive than the overall spider community to local effects. In addition, Salticidae richness can predict 74% of the total spider richness recorded and may be used as spider diversity bio-indicators in this climatic region.     

Spatial analysis of ectomycorrhizal fungi reveals that root tip communities are structured by competitive interactions

Microbial ecology has made large advances over the last decade, mostly because of improvements in molecular analysis techniques that have enabled the detection and identification of progressively larger numbers of microbial species. However, determining the ecological patterns and processes taking place in communities of microbes remains a significant challenge. Are communities randomly assembled through dispersal and priority effects, or do species interact with each other leading to positive and negative associations? For mycorrhizal fungi, evidence is accumulating that stochastic and competitive interactions between species may both have a role in shaping community structure. Could the methodological approach, which is often incidence based, impact the outcomes detected? Here, we applied an incidence‐based Terminal Restriction Fragment Length Polymorphism (T‐RFLP) database approach to examine species diversity and ecological interactions within a community of ectomycorrhizal (ECM) fungi. Co‐occurrence analysis revealed that the ECM community colonizing root tips was strongly structured by competitive interactions, or ecological processes generating a similar spatial pattern, rather than neutral processes. Analysis of β‐diversity indicated that community structure was significantly more similar (spatially autocorrelated) at distances equal to or <3.41 m. The eight most frequently encountered species in the root tip community of ECM fungi displayed significant competitive interactions with at least one other species, showing that the incidence‐based approach was capable of detecting this sort of ecological information.     

Sylvatic and peridomestic populations of Triatoma pseudomaculata are not significantly structured by habitat,as revealed by two genetic markers

Chagas disease remains a public health concern in Brazil and other Latin American countries, mainly due to the potential domiciliation of native triatomine species. We analyzed the genetic variability of Triatoma pseudomaculata in sylvatic and peridomestic ecotopes throughout three localities in the northeastern state of Bahia, Brazil. We studied polymorphisms generated by random amplified polymorphic DNA (RAPD) and isoenzyme electrophoresis analyses. Based on RAPD analysis, each specimen was assigned to one of three genetic clusters. Although all sylvatic specimens from one locality were grouped into the same cluster, sylvatic and peridomestic specimens from the other two localities were broadly distributed between the remaining two clusters, suggesting that geographic population structuring was not occurring. Furthermore, isoenzyme analysis suggested that distinct populations were in Hardy‐Weinberg equilibrium. Low statistical values for Wright's Fst index also supported the absence of population structuring and suggested the occurrence of panmixia. We conclude that genetic flow occurs between sylvatic and peridomestic T. pseudomaculata populations, probably as a consequence of passive and active dispersion of the insects, associated with deforestation and anthropic transformations.     

Hydrologic similarity to reference wetlands does not lead to similar plant communities in restored wetlands

Few wetland restoration projects include long‐term hydrologic and floristic data collection, limiting our understanding of community assembly over restored hydrologic gradients. Although reference sites are commonly used to evaluate outcomes, it remains unclear whether restoring similar water levels to reference sites also leads to similar plant communities. We evaluated long‐term datasets from reference and restored wetlands 15 years after restoration to test whether similar water levels in reference and restored sites led to vegetation similarity. We compared the hydrologic regimes for three different wetland types, tested whether restored wetland water levels were different from reference water levels, and whether hydrologic similarity between reference and restored wetlands led to similarity in plant species composition. We found restored wetlands had similar water levels to references 15 years after restoration, and that species richness was higher in reference than restored wetlands. Vegetation composition was similar across all wetland types and was weakly correlated to wetland water levels overall. Contrary to our hypothesis, water table depth similarity between restored and reference wetlands did not lead to similar plant species composition. Our results highlight the importance of the initial planting following restoration and the importance of hydrologic monitoring. When the restoration goal is to create a specific wetland type, plant community composition may not be a suitable indicator of restoration progress in all wetland types.     

Responses of plant and bird communities to prescribed burning in tallgrass prairies

Historic losses and fragmentation of tallgrass prairie habitat to agriculture and urban development have led to declines in diversity and abundance of plants and birds associated with such habitat. Prescribed burning is a management strategy that has potential for restoring and rejuvenating prairies in fragmented landscapes, and through such restoration, might create habitat for birds dependent upon prairies. To provide improved data for management decision-making regarding the use of prescribed fire in tallgrass prairies, we compared responses of plant and bird communities on five burned and five unburned tallgrass prairie fragments at the DeSoto National Wildlife Refuge, Iowa, USA, from 1995 to 1997. Overall species richness and diversity were unaffected by burning, but individual species of plants and birds were affected by year-treatment interactions, including northern bobwhite (Colinus virginianus) and ring-necked pheasant (Phasianus colchicus), which showed time-delayed increases in density on burned sites. Analyses of species/area relationships indicated that, collectively, many small sites did make significant contributions to plant biodiversity at landscape levels, supporting the overall conservation value of prairie fragments. In contrast, most birds species were present on larger sites. Thus, higher biodiversity in bird communities which contain area-sensitive species might require larger sites able to support larger, more stable populations, greater habitat heterogeneity, and greater opportunity for niche separation.     

Substrate affinities of wood decay fungi are foremost structured by wood properties not climate

Wood decomposing fungi differ in their substrate affinities, but to what extent factors like wood properties influence host specialization, compared to climate, is largely unknown. In this study, we analysed British field observations of 61 common wood decay species associated with 41 tree and shrub genera. While white rot fungi ranged from low-to high-substrate affinity, brown rot fungi were exclusively mid-to high-affinity. White rot fungi associated with dead fallen wood demonstrated the least substrate affinity. The composition of wood decomposer fungi was mostly structured by substrate properties, sorted between angiosperms and conifers. Any relationships with temporal and regional climate variability were of far less significance, but did predict community-based and substrate-usage host shifts, especially for fungi on fallen deadwood. Our results demonstrate that substrate shifts by wood-decay fungi will depend primarily upon their degree of affinity to, and the distribution of, related woody genera, followed less at regional levels by climate impacts.