Isozyme analysis of Galaxias species (Teleostei: Galaxiidae) from the Taieri River, South Island, New Zealand: a species complex revealed

We examined genetic differentiation among 23 samples of non-migratory river galaxias from 17 streams in the Taieri River system, South Island, New Zealand. Four major genetic types were found, two of which occur in narrow sympatry in one location. These were compared with topotypical material representing Galaxias anomalus from the Clutha system (Otago) and G. vulgaris from the Waimakariri system (Canterbury) in order to establish identity. Morphological examination of these four major genetic types revealed consistent concomitant differences. The results suggest that there are at least three species of river galaxias in the Taieri system: G. anomalus, G. vulgaris and at least one previously undescribed species. We propose that the genetic structuring and subsequent speciation of this group has been promoted by the absence of the marine juvenile phase that is found in five other members of the genus native to New Zealand. This structuring may be exacerbated by population fragmentation over the last century owing to the negative influence of introduced trout. The phylogenetic diversity within the river system mirrors the diverse flora and invertebrate fauna of the region, and has conservation implications that parallel those resulting from our improved knowledge of the New Zealand herpetofauna through the application of genetic analysis.     

Population ecology of Trichomycterus itacarambiensis, a cave catfish from eastern Brazil (Siluriformes, Trichomycteridae)

The population ecology of the trichomycterid catfish, Trichomycterus itacarambiensis, from the Olhos d'Àgua Cave, Itacarambi Co., Minas Gerais, eastern Brazil, was investigated by the mark-recapture method during the dry season of 1994 (April to October). The cave is subject to a pronounced seasonality, and is flooded during part of the rainy period. All individuals captured along the 5000 m long stream gallery (divided in 50 sections) were marked by tattooing, measured and examined for the degree of pigmentation reduction. About one third of the population is truly albinic; the remainder may exhibit partial depigmentation. After five bimestrial collections, 583 specimens have been marked, of which 150 were recaptured at least once. Estimated population size was 1500–2000 individuals longer than 20 mm SL. The total population size of T. itacarambiensis is considered small when compared to those of epigean trichomycterids and of other studied cavefishes as well. Mean population density was 0.15–0.20 individuals m^-2 throughout the dry season; it increased with the distance to the stream resurgence, probably due to the higher food availability upstream. This population density may be considered intermediate to those of other troglobitic fishes. Most recaptures (66%) were done in the same section as the previous capture. Active movements, both upstream and downstream, were recorded up to distances of 600 m; a few possibly passive, downstream movements covered distances from 900 to 1500 m. T. itacarambiensis catfishes move more frequently and for longer distances than the Brazilian blind pimelodids, Pimelodella kronei. Individual growth in T. itacarambiensis probably occurs in pulses, during the rainy seasons; interruption of growth in the dry season is attributed to the pronounced food shortage. The mean longevity was estimated as seven years. Differences between pigmented and albino individuals include a higher frequency of downstream movements and slightly higher growth rates in the latter.     

Population status,structure and activity patterns of the Bohor reedbuck Redunca redunca in the north of the Bale Mountains National Park,Ethiopia

The Bohor reedbucks Redunca redunca (Pallas, 1767) were studied in the Bale Mountains National Park (BMNP), Ethiopia to assess their population ecology and activity patterns. The total count method was used to assess population size. Activity patterns of a herd were studied with five minutes recording intervals. There were 406 Bohor reedbucks in the study area of which 96.8% (n = 393) was confined to the Gaysay‐Adelay area. The population was female‐biased. Excluding juveniles, 57.1% (n = 232) was females and 33.5% (n = 136) was males. More adults (71.7%, n = 291) were observed than sub‐adults (18.9%, n = 77) and juveniles (9.4%, n = 38). The herd size of Bohor reedbucks varied from 3 to 5. Herds were seen in aggregations of up to 59 individuals during the dry season in swamp grassland habitat. The maximum number observed in such aggregations during the wet season was 38. The diurnal activity pattern showed feeding peaks early in the morning and late in the afternoon, with resting during the mid‐day. Two feeding peaks were observed in the nocturnal activity phase: one during dusk and the other around midnight. In contradiction to the general concept of occurrence of smaller herds during the dry season, the Bohor reedbucks aggregate in swamps during the dry season. They were also active during night and day time.     

Population dynamics of an endangered heathland shrub,Epacris stuartii (Epacridaceae): Recruitment,establishment and survival

The only known population of the endangered shrub Epacris stuartii Stapf was studied from 1994 to 2001 using demographic census techniques. The effects of substrate, a fire and a storm on the emergence and survival of seedlings and the survival of established plants of different sizes were examined using failure‐time analyses and logit‐linear models. Ninety‐five per cent of seedling emergence was delayed until the second post‐fire spring, an unusual response among species with persistent soil seed banks. Mortality of seedlings was extreme compared with larger‐seeded species, but diminished significantly with age. Seedling mortality varied significantly between substrates: 40% of seedlings persisted for more than 5 years in mineral soil, whereas less than 10% lived more than a year on rock and intermediate substrates. However, seedling numbers and local densities were lower on soils than other substrates. Background mortality of established plants was lower on soil and intermediate substrates (0.5% per year) than on rock (3% per year). Small plants may be more susceptible than large plants on rock, but not on soil. Both the fire and the storm resulted in elevated mortality of established plants. The population exhibited a variable response to fire, with plants on rock and intermediate substrates behaving as obligate seeders, whereas plants in soil resprouted. This appears to be the first report of microhabitat variation in fire response at sympatric scales. The effects of the storm were apparently independent of substrate and plant size. The essentially independent disturbance regimes comprising recurring fires and storms are likely to have a profound effect on the long‐term population dynamics of E. stuartii. Over the 7‐year census period, recruitment has failed to compensate for mortality, resulting in a 30% net decline in the population. The demographic census has proved to be crucial in the detection and diagnosis of this decline.     

Population ecology of the paddy field-dwelling fish Channa gachua (Günther) (Perciformes, Channidae) in Sri Lanka

A population of Channa gachua in a small irrigation canal that supplies rice fields was studied by monthly sampling over 2 years. The population density was positively correlated with the rainfall and varied from 0.34 to 0.95 individuals m⁻². The growth parameters of the von Bertalanffy growth equation determined on monthly size–frequency data were L_x = 179 mm total length and K =0.50. Overall male to female ratio was 0.82 and there were more females than males in the middle size classes. Spawning occurred throughout the year, but all evidence indicated enhanced breeding during major rainy periods of May to July and October to December. The length at first spawning was 102 mm, which is reached in about 20 months. Fecundity, which varied between 389 and 2130, was positively correlated with gonad weight, body weight and total length. Longevity and natural mortality were estimated as 6 years and l.27 yr⁻¹, respectively. However, 99% of the population appeared to live for only 3 years. The mean biomass, average annual production and turnover ratio of the population were 7.35 g m⁻², 12.06 g m⁻² and 1.64, respectively.     

Complementarity among otter trawl,cast net,and encircling gill net improves the characterization of a subtropical subtidal fish assemblage

We investigated the combined use of cast net (CN), otter trawl (OT), and encircling gill net (EG) to characterize the richness, composition, and abundance of species and functional groups of the subtidal fish assemblage in a subtropical shallow ecosystem in Brazil. Our hypothesis, that this combination would improve faunal characterization, was supported. The CN best sampled small pelagic planktivores (e.g., juvenile sardines) and detritivores (e.g., juvenile mullets); OT, small and large demersal benthivores (e.g., mojarras and croakers); and EG, large fast‐swimming species, such as piscivores (e.g., snooks and weakfishes) and large detritivores (adult mullets). The mean and total richness were best sampled with the OT. The most accurate richness estimate using non‐parametric estimators was reached by combining all three types of gear. Our findings emphasize that the careful sampling gear selection and the use of multiple gears are indispensable for solid characterizations of coastal fish fauna, and consequently, for the success of monitoring and research programs.     

The influence of the diel climatic cycle on the depth-time distribution of phytoplankton and photosynthesis in a shallow equatorial lake (Lake Baringo,Kenya)

Lake Baringo is a shallow equatorial lake. This paper reports a diel study of the depth-time distribution of phytoplankton and photosynthesis at one location in Lake Baringo on 10 March 1989. The water column shows a pattern of diurnal stratification probably accentuated by the high turbidity of the water and therefore rapid attenuation of solar energy. This stratified pattern breaks down at night due to atmospheric cooling and the regular onset of winds in the early evening. The phytoplankton is dominated byMicrocystis aeruginosa with some associated epiphytes. It concentrates in the narrow euphotic zone during the diurnal period of stratification due to buoyancy of theMicrocystis; evening breakdown of the thermocline results in the phytoplankton being mixed throughout the water column. A series of measurements of photosynthesis throughout the diurnal period gives an areal rate of 3.8 g O₂ m⁻² d⁻¹. The relationship between this value and the level of fish exploitation in Lake Baringo is discussed. The diel cycle in Lake Baringo is interpreted as dominating over any seasonal limnological cycle in the lake.     

Evaluation of a sweep net electrofishing method for the collection of small fish and shrimp in lotic freshwater environments

A major limitation of methods for collecting small fish and shrimp is that no single method is equally effective for all species or all life history stages. We compared the efficacy of the sweep net electrofishing (SNE) method with two other commonly used sampling methods for the collection of small fish and shrimp, the standard sweep net (SW) and the point abundance electrofishing (PAE) method developed by Copp & Penaz (1988). The effectiveness of the three methods was compared under three different current speeds in an Australian lowland river. The SNE method collected an order of magnitude more shrimp and a greater size range than the other two methods, irrespective of the current speed. The SNE method captured a similar number of fish to the SW method, but significantly more individuals than the PAE method. However, the two electrofishing methods caught a greater size range of both fish and shrimp than did the SW method. The effectiveness of the SNE method appears to be due to its ability to immediately capture shocked individuals, thereby lessening the likelihood of escape. Whilst the SNE method is not quantitative, its high level of effectiveness is likely to be particularly useful in systems with low densities of fish and shrimp.     

Population development of Arabian Gazelles,Gazella arabica,on the Farasan Islands,Saudi Arabia (Mammalia: Bovidae)

The population of the Arabian Gazelle (Gazella arabica) was assessed on Farasan Kebir, the main island of the Farasan Archipelago (Saudi Arabia), from June 2010 to January 2013, using road strip counts. Two methods of estimating the population size were applied to analyse data obtained from the road strip count: (i) the traditional technique after Bothma, with a fixed strip width, and (ii) distance sampling using DISTANCE 6.0. Estimates varied between 483 gazelles (95% CI: 44) in November 2010 and 1070 gazelles (95% CI: 63) in June 2010. The number of gazelles estimated for Farasan Kebir using distance sampling is 2388 gazelles (95% CI: 921) in December 2011, 1199 gazelles (95% CI: 1372) in June 2012, and 1048 gazelles (95% CI:1524) in January 2013. Taking into account previous counts (1988–2009) the population seems, despite considerable variations, surprisingly stable. This may be attributed to a prevailing fishing culture among local residents and thus the absence of traditional hunting as well as the ranger activities on the islands. The disparity between the two estimation methods decreased to only 270 gazelles in January 2013 and provides additional confidence in the future application of both estimation techniques.The traditional technique is recommended as the more practical method for rangers and conservation mangers to determine population changes.     

Population genetic structure of the butterfly Melitaea didyma (Nymphalidae) along a northern distribution range border

The population genetic structure of the butterfly Melitaea didyma was studied along the northern distribution range border in Central Germany by means of allozyme electrophoresis. Individuals were sampled from a total of 21 habitat patches from four regions, and two provinces. Sampling was designed to estimate local vs. regional differentiation. High levels of variability were found, H _e= 0.14–0.21. The mean expected sample heterozygosity from one region, Mosel, was significantly lower than from the Hammelburg region, H _e= 0.17 and 0.19, respectively. Two hierarchical levels of genetic differentiation were found. Within regions individuals sampled from different patches behaved as belonging to one population with high levels of gene flow (Hammelburg F _ST= 0.015, Mosel F _ST= 0.044), though local isolation barriers did create a substructuring of these populations. The inbreeding coefficients, F _IS, were constant over all sample levels, suggesting a similar distribution of habitat patches within regions. Between regions gene flow was limited. An isolation by distance analysis indicated that the hierarchical structure, at the provincial level, may be breaking down due to isolation of regional populations. A more general observation was that the sampling design may greatly have influenced the estimation of genetic differentiation. Depending on which samples were included, overall F _ST estimates ranged from 0.059–0.090.     

Population size, weight distribution and food in a persistent population of the rare medicinal leech, Hirudo medicinalis

1. It is important for species recovery and conservation management projects to know the minimum viable population size for rare and endangered species, such as the medicinal leech, Hirudo medicinalis. Therefore, using a catch‐removal method, this study estimated every two years (1986, 1988, 1990, 1992) the total number of medicinal leeches in a tarn in the English Lake District, and the number of mature adults in the population. 2. Four samples were taken each year in June and July, when water temperatures exceeded 20 °C. Population size was estimated both by maximum likelihood and regression methods. All leeches were weighed alive and size groups were separated by polymodal frequency analysis. A small sample of the blood meal in each leech gut was taken before the leeches were returned to the tarn, and was used to estimate the proportion of mammalian and non‐mammalian blood in the meals. 3. Both methods of estimation produced similar values, increasing confidence in the population estimates. Values for the total population in June and July varied among years from 248 to 288, the maximum value being only 16% higher than the minimum. Values for the number of mature leeches varied from 48 to 58 (19–20% of the total population), and this was an estimate of the effective population size. 4. There were four size groups. The largest mature leeches (live weight >5 g) in group IV formed only 1% of the population, and the smallest (0.02–0.5 g) in group I 14–17%. Most leeches were in two overlapping groups of immature (64–67% of population) and mature (18%) leeches with size ranges of 0.4–3.4 g and 2.5–5 g respectively. The percentage of leeches in each size group was very consistent among years. Blood meals were found in 38–44% of the leeches in group I, 45–50% in group II, 70–75% in group III, and 100% in group IV, but mammalian blood was present only in larger mature leeches (>3.5 g). 5. Medicinal leeches were first detected in the tarn in 1980 and are still present in 2007, so the population has persisted for at least 27 years. Compared with minimum viable population sizes for other species, including many endangered species, values for this medicinal leech population are extremely low, but may be typical of some rare freshwater invertebrates in isolated habitats.     

Population size,habitat fragmentation,and the nature of adaptive variation in a stream fish

Whether and how habitat fragmentation and population size jointly affect adaptive genetic variation and adaptive population differentiation are largely unexplored. Owing to pronounced genetic drift, small, fragmented populations are thought to exhibit reduced adaptive genetic variation relative to large populations. Yet fragmentation is known to increase variability within and among habitats as population size decreases. Such variability might instead favour the maintenance of adaptive polymorphisms and/or generate more variability in adaptive differentiation at smaller population size. We investigated these alternative hypotheses by analysing coding-gene, single-nucleotide polymorphisms associated with different biological functions in fragmented brook trout populations of variable sizes. Putative adaptive differentiation was greater between small and large populations or among small populations than among large populations. These trends were stronger for genetic population size measures than demographic ones and were present despite pronounced drift in small populations. Our results suggest that fragmentation affects natural selection and that the changes elicited in the adaptive genetic composition and differentiation of fragmented populations vary with population size. By generating more variable evolutionary responses, the alteration of selective pressures during habitat fragmentation may affect future population persistence independently of, and perhaps long before, the effects of demographic and genetic stochasticity are manifest.     

Population genetic analysis of microsatellite variation of guppies (Poecilia reticulata) in Trinidad and Tobago: evidence for a dynamic source–sink metapopulation structure,founder events and population bottlenecks

Riverine fish populations are traditionally considered to be highly structured and subject to strong genetic drift. Here, we use microsatellites to analyse the population structure of the guppy (Poecilia reticulata), focussing on the headwater floodplain area of the Caroni drainage in Trinidad. We also analyse the population genetics of guppies in the Northern Drainage in Trinidad, a habitat characterized by rivers flowing directly into the sea, and a small isolated population in Tobago. Upland Caroni populations are highly differentiated and display low levels of genetic diversity. However, we found no evidence to suggest that these upland populations experienced recent population crashes and the populations appear to approach mutation–drift equilibrium. Dominant downstream migration over both short‐ and long‐time frames has a strong impact on the population genetics of lowland Caroni populations. This drainage system could be considered a source–sink metapopulation, with the tributary furthest downstream representing a ‘super sink’, receiving immigrants from rivers upstream in the drainage. Moreover, the effective population size in the lowlands is surprisingly low in comparison with the apparently large census population sizes.     

Monitoring the effective population size of a brown bear (Ursus arctos) population using new single-sample approaches

The effective population size (N(e) ) could be the ideal parameter for monitoring populations of conservation concern as it conveniently summarizes both the evolutionary potential of the population and its sensitivity to genetic stochasticity. However, tracing its change through time is difficult in natural populations. We applied four new methods for estimating N(e) from a single sample of genotypes to trace temporal change in N(e) for bears in the Northern Dinaric Mountains. We genotyped 510 bears using 20 microsatellite loci and determined their age. The samples were organized into cohorts with regard to the year when the animals were born and yearly samples with age categories for every year when they were alive. We used the Estimator by Parentage Assignment (EPA) to directly estimate both N(e) and generation interval for each yearly sample. For cohorts, we estimated the effective number of breeders (N(b) ) using linkage disequilibrium, sibship assignment and approximate Bayesian computation methods and extrapolated these estimates to N(e) using the generation interval. The N(e) estimate by EPA is 276 (183-350 95% CI), meeting the inbreeding-avoidance criterion of N(e) > 50 but short of the long-term minimum viable population goal of N(e) > 500. The results obtained by the other methods are highly consistent with this result, and all indicate a rapid increase in N(e) probably in the late 1990s and early 2000s. The new single-sample approaches to the estimation of N(e) provide efficient means for including N(e) in monitoring frameworks and will be of great importance for future management and conservation.     

Ontogenetic habitat shifts by Galaxias gracilis (Galaxiidae) between the littoral and limnetic zones of Lake Kanono, New Zealand

Synopsis Diel and spatial differences in distribution were determined for the larvae, juveniles, and adults of Galaxias gracilis (Galaxiidae) in a New Zealand dune lake during summer months. Larvae (mostly 10–25 mm TL) and juveniles (25–40 mm TL) inhabited shallow (0–3 m) waters of the limnetic zone and fed predominantly on two limnetic zooplankton species; Bosmina meridionalis and a calanoid copepod. At about 40 mm TL, fish moved from the limnetic to the littoral zone and expanded dietary breadth from two to over seven main prey species, including five species of littoral invertebrates. After reaching a size of about 60 mm TL, most fish moved back offshore to the deeper waters (5–15 m) of the limnetic zone during the day, moving back to the littoral zone at night to feed on invertebrates. The selection of different intra-lacustrine habitats by the various size groups of G. gracilis, and the movements between them, are interpreted as adaptive responses to the interaction between ontogenetic changes in feeding requirements and predation risk.     

Food Preference of Perch (Perca fluviatilis) Stocked in a Previously Fishless,Acid Bog Lake and Development of the Fish Population in Absence of Piscivory

The almost fishless, acid Lake Fuchskuhle was physically partitioned into 4 sections and stocked with young, 10‐ to 13‐cm perch. Their body growth was normal only up to age 4 years. Although the perch spawned successfully, reproduction was negligible because only few offspring survived the first year of life. Food for young perch was plentiful, benthic invertebrates composing the main source. Because the population included only 2 to 3 year classes, the perch could not shift from benthic feeding to piscivory as they grew. As a result, growth rate decreased in older fishes (over 4–5 years old). The benthic food supply alone could not satisfy the energy requirements of the older perch.     

Naufraga balearica,a threatened narrow endemism of the Balearic Islands (western Mediterranean basin): assessing the population dynamics of two subpopulations

Naufraga balearica constitutes a monospecific genus of Majorca (Balearic Islands) and is Critically Endangered according to International Union for Conservation of Nature categories. The species has a narrow distributional area, with one subpopulation at Coves Blanques (CB) and a small set of subpopulations on the Formentor Peninsula. A previous work has shown that the subpopulation in Cap de Catalunya (CC) (located on the Formentor Peninsula) has undergone a distinct decline over the last decade. Herein, we report a comparative study of the population dynamics of N. balearica at the CB and CC sites. By monitoring permanent plots for 6 years (2004–2009), we analyzed the frequency of cells in which the species was present, and, for each annual transition (from November, year t to November, year t + 1), we determined the frequency of cells in which the species was stable, decreased or increased for each species and site using a G‐test of independence. The same parameters were also analyzed for N. balearica at the quarterly transitions of November–February, February–May, May–August and August–November. The results indicated that the decline of the threatened species was more marked in the CB subpopulation. N. balearica showed a seasonal trend at both sites, with some exceptions. The most common neighboring species were Dactylis glomerata and Erodium reichardii, and they negatively affected N. balearica; however, the neighboring species effect was not homogeneous among the annual transitions analyzed, indicating that other factors are involved. Finally, some conservation measures are proposed.