Ayala, F.J., Fitch, W.M. and Clegg, M.T. Variation and evolution in plants and microorganisms: toward a new synthesis 50 years after Stebbins

In January 2000, an impressive cohort of evolutionary biologistsconvened in Irvine, California, to celebrate the 50th anniversaryof the publication of G. Ledyard Stebbins’ Variation andevolution in plants. The brief introductory appreciation ofStebbins by Peter Raven describes Variation as ‘the mostimportant book on plant evolution of the 20th century’(p. 5). This strongly worded claim is not entirely without justification.Among the ‘New Synthesists’, Stebbins achieved forbotanists what Theodosius Dobzhansky (later to be a colleagueof Stebbins at UC Davis) had previously achieved for geneticists,Ernst Mayr for zoologists and G. G. Simpson for palaeontologists.Admittedly, the     

The Experimental Study of Bacterial Evolution and Its Implications for the Modern Synthesis of Evolutionary Biology

Since the 1940s, microbiologists, biochemists and population geneticists have experimented with the genetic mechanisms of microorganisms in order to investigate evolutionary processes. These evolutionary studies of bacteria and other microorganisms gained some recognition from the standard-bearers of the modern synthesis of evolutionary biology, especially Theodosius Dobzhansky and Ledyard Stebbins. A further period of post-synthesis bacterial evolutionary research occurred between the 1950s and 1980s. These experimental analyses focused on the evolution of population and genetic structure, the adaptive gain of new functions, and the evolutionary consequences of competition dynamics. This large body of research aimed to make evolutionary theory testable and predictive, by giving it mechanistic underpinnings. Although evolutionary microbiologists promoted bacterial experiments as methodologically advantageous and a source of general insight into evolution, they also acknowledged the biological differences of bacteria. My historical overview concludes with reflections on what bacterial evolutionary research achieved in this period, and its implications for the still-developing modern synthesis.     

Emerging genomic and proteomic evidence on relationships among the animal, plant and fungal kingdoms

Sequence-based molecular phylogenies have provided new models of early eukaryotic evolution. This includes the widely accepted hypothesis that animals are related most closely to fungi, and that the two should be grouped together as the Opisthokonta. Although most published phylogenies have supported an opisthokont relationship, a number of genes contain a tree-building signal that clusters animal and green plant sequences, to the exclusion of fungi. The alternative tree-building signal is especially intriguing in light of emerging data from genomic and proteomic studies that indicate striking and potentially synapomorphic similarities between plants and animals. This paper reviews these new lines of evidence, which have yet to be incorporated into models of broad scale eukaryotic evolution.     

Lateral and Vertical Transfer in Biology,Linguistics and Anthropology: An Account of Widely Neglected Ideas in the Formation of Evolutionary Theories

The scope of this paper is to highlight models of reticulate evolution in a dual sense: (1) by stressing the importance of early models of horizontal/lateral transfer instead of models of unilinear vertical transfer in biology, linguistics, anthropology and related disciplines, and (2) by demonstrating that the acceptance of evolutionism as leitmotif in the nineteenth century was only possible by intense and repeated networks between scholars of different academic realms which lead to the assumption that the development of biological species and human cultures could be perceived as part of the same co-evolutionary process. Contrary to these widely popularized models of unilinear evolution, I would like to draw attention to alternative theories emphasizing the horizontal transfer of words, phenotypes/genotypes, and culture traits. Examples are the method of areal typology in linguistics, the theory of endosymbiosis in biology, and the anti-evolutionist attitude in Boasian anthropology, combined with an emphasis on the diffusion of culture traits. Further, it shall be pointed out that, even when—after the general dismissal of evolutionist ideas in the beginning of the twentieth century—the idea of co-evolutionary processes in the development of human populations and languages was again forwarded in the late twentieth century, this ‘modern synthesis’ of genetics, linguistics and archeology relied largely on interdisciplinary reticulations between sciences and humanities and serves as another example of reticulate evolution.     

云南大叶茶细胞学研究

本文采用去壁低渗法研究了云南大叶茶的染色体核型,间期核形态和多核现象。结果表明大多数染色体是中部着丝粒染色体,5对是近中部着丝粒染色体,第7和12对染色体中各有1条具随体染色体。根据Levan等的分类原则,其核型为2n=20m+8sm+2sm(SAT),属于Stebbins核型分类的“2A”型,同时亦发现有“2B”型的核型。云南大叶茶间期核型为浓密分散型和复杂染色中央微粒型两种;并首次发现茶树中的多核现象,在所观察的1250个细胞中有6个是具双核细胞(占0.48％),有2个是具三核细胞占(0.16％)。另外,本文还对部份山茶属植物的核型进行了讨论。从核型上可以看出:(1)山茶属植物在进化上属于较原始的种系;(2)山茶属植物核型的进化基本符合Stebbins提出的植物界核型进化的规律,即对称—→不对称;(3)山茶属植物的核型在一定范围内变异甚大,这种变异没有一定的规律性。这些观点与张宏达提出的山茶属植物的分类系统基本吻合。带随体的染色体数目在山茶属植物核型的进化上没有什么明显的变化规律。     

Evolution in changing environments: the "synthetic" work of Clausen, Keck, and Hiesey.

The studies of Clausen, Keck, and Hiesey (CKH) have been widely cited as exemplars of ecotypic differentiation in textbooks and in the primary literature. However, the scope of their findings and achievements is significantly greater than this. In this paper we analyze the research program of CKH, highlighting their major findings during the years when the modern synthesis of evolution was taking shape. That synthesis, curiously, drew little from their examples, although their studies at the Carnegie Institution represent conceptual and methodological work that is still relevant. The works of CKH not only embodied the principles of the nascent synthesis, but often provided needed supporting data. Their classic work, especially on Achillea and Potentilla, produced abundant evidence on population differentiation of many quantitative traits and plant phenotypes, as well as demonstrating the now commonly reported distinction between environmental and genetic determination of traits. Their ecological genetic investigations of quantitative traits in plants were in sharp contrast to contemporaneous animal studies on adaptation that focused on discrete polymorphisms--with correspondingly little influence of the environment on phenotypic expression. Of utmost importance was the demonstration by CKH of adaptive differentiation by natural selection and their approaches to understanding the genetic structure of populations.     

G. Ledyard Stebbins, Jr. and the evolutionary synthesis (1924-1950)

This is an historical paper examining the scientific background of George Ledyard Stebbins, Jr. (b. 1906), one of the foremost botanists of this century and one of the architects of the evolutionary synthesis, the intellectual event that brought together genetics and selection theory in the interval between 1920 and 1950. It considers his scientific influence and research, beginning with his Harvard education in 1924 and ending in 1950 with the publication of his book Variation and Evolution in Plants. The paper also more broadly assesses the contributions of other botanists to the evolutionary synthesis, including discussion of the work of Edgar Anderson (1897-1967) and others. It also traces the larger historical patterns of American botany, which saw a shift from East Coast botany as exemplified by Harvard botany, to West Coast botany, as exemplified by California botany.     

Race and language in the Darwinian tradition (and what Darwin's language-species parallels have to do with it)

What should human languages be like if humans are the products of Darwinian evolution? Between Darwin's day and our own, expectations about evolution's imprint on language have changed dramatically. It is now a commonplace that, for good Darwinian reasons, no language is more highly evolved than any other. But Darwin, in The descent of man, defended the opposite view: different languages, like the peoples speaking them, are higher or lower in an evolutionarily generated scale. This paper charts some of the changes in the Darwinian tradition that transformed the notion of human linguistic equality from creationist heresy to evolutionist orthodoxy. Darwin's position in particular is considered in detail, for there is disagreement about what it was, and about the bearing of a famous paragraph in the Descent comparing languages and species.     

Sometimes Similar,Sometimes Dangerously Different: Exploring Resonance,Laminations and Subject-Formation in South India

This paper explores the ways in which particular individuals or groups are cast as problematically other at certain times by exploring the relationship between empathy and antipathy – identified as products of ‘resonance’, or a certain kind of responsiveness to embodied encounters with others and also to concerns, ideas and discourses that originate locally or from elsewhere. Consequent effects on subject-formation and affordances of social possibilities are explored through an intensive focus on one Muslim man. The notion of a ‘laminated subjectivity’ is presented and elucidated. The paper draws on ethnography conducted in a Tamil town and is set against the backdrop of Hindu–Muslim relations in India.     

Fisherian and Wrightian theories of speciation

Fisher's theory of sexual selection, Wright's shifting-balance theory, and recent models based on them are reviewed as mechanisms of animal speciation. The joint evolution of mating preferences and secondary sexual characters can cause rapid nonadaptive phenotypic divergence and premating isolation between geographically separated populations, or along a cline. Extensive comparative data on Drosophila species support the suggestion of R. A. Fisher and T. Dobzhansky that the evolution of mating preferences can reinforce partial postmating isolation between sympatric populations. The interaction of natural selection and random genetic drift in local populations with a small effective size can produce a rapid transition between relatively stable phenotypes separated by an adaptive valley, or between chromosomal rearrangements with a heterozygote disadvantage. Large demographic fluctuations, such as frequent random local extinction and colonization, are required for the rapid spread of new adaptations (or karyotypes) when intermediate phenotypes (or rearrangement heterozygotes) are selected against.     

Erich Wasmann, Ernst Haeckel, and the limits of science

Summary In the late nineteenth century, two German evolutionary biologists, Ernst Haeckel and Erich Wasmann, argued publicly about how to apply evolutionary biology and where its explanatory limits, if any, lay. The German Jesuit evolutionist entomologist Wasmann’s (1859–1931) faith and Jesuit philosophical training intersected to reconcile evolution and Catholicism by delineating the philosophical limits of science: Wasmann demarcated a material and historical world, which science can describe, and the realm of subjective experience and the soul, which it cannot. Wasmann’s evolution contrasted (and conflicted) strongly with contemporary German atheistic and anticlerical monistic evolutionary biology. This paper discusses Wasmann’s very public debates with monism’s prophet, Ernst Haeckel.     

EVIDENCE FOR DOBZHANSKY-MULLER INCOMPATIBILITES CONTRIBUTING TO THE STERILITY OF HYBRIDS BETWEEN MIMULUS GUTTATUS AND M. NASUTUS

Abstract Both chromosomal rearrangements and negative interactions among loci (Dobzhansky‐Muller incompatibilities) have been advanced as the genetic mechanism underlying the sterility of interspecific hybrids. These alternatives invoke very different evolutionary histories during speciation and also predict different patterns of sterility in artificial hybrids. Chromosomal rearrangements require drift, inbreeding, or other special conditions for initial fixation and, because heterozygosity per se generates any problems with gamete formation, F1 hybrids will be most infertile. In contrast, Dobzhansky‐Muller incompatibilities may arise as byproducts of adaptive evolution and often affect the segregating F2 generation most severely. To distinguish the effects of these two mechanisms early in divergence, we investigated the quantitative genetics of hybrid sterility in a line cross between two members of the Mimulus guttatus species complex (M. guttatus and M. nasutus). Hybrids showed partial male and female sterility, and the patterns of infertility were not consistent with the action of chromosomal rearrangements alone. F2 and F1 hybrids exhibited equal decreases in pollen viability (> 40%) relative to the highly fertile parental lines. A large excess of completely pollen‐sterile F2 genotypes also pointed to the segregation of Dobzhansky‐Muller incompatibility factors affecting male fertility. Female fertility showed a pattern similarly consistent with epistatic interactions: F2 hybrids produced far fewer seeds per flower than F1 hybrids (88.0 ± 2.8 vs. 162.9 ± 8.5 SE, respectively) and either parental line, and many F2 genotypes were completely female sterile. Dobzhansky‐Muller interactions also resulted in the breakdown of several nonreproductive characters and appear to contribute to correlations between male and female fertility in the F2 generation. These results parallel and contrast with the genetics of postzygotic isolation in model animal systems and are a first step toward understanding the process of speciation in this well‐studied group of flowering plants.     

Making ecumenes: ontogeny,amity, and resistance in Brazilian indigenous pathways

The article reconsiders the concept of ecumene in anthropology, through a focus on Panoan-language-speaking indigenous peoples in Brazil. It explores the notion that ecumenes are intersubjectively forged space-times and it critiques culturalist and evolutionist approaches to the ecumene concept. Drawing on ethnography of Yawanawá and Cashinahua, analysis treats ecumenes as dynamic space-times within which amity and enmity arise and identity politics are forged or falter. These arise phenomenologically over time as bodies acquire knowledge, capacity, creativity, and agency, resulting in the sedimentation and fixation of humanness, seen as contingent and temporary in nature. It is argued that if ecumene is to be a useful category of analysis, it is necessary to put aside heuristic divisions between indigenous and anthropological conceptual and theoretical framing of global historical processes. Ecumene needs be framed with respect to an analysis of graduated sovereignty, predatory capitalism, and institutionalized racism, as Amerindians experience and frame these historically.     

Selfish Genes and Plant Speciation

A key to understand the process of speciation is to uncover the genetic basis of hybrid incompatibilities. Selfish genetic elements (SGEs), DNA sequences that can spread in a population despite being associated with a fitness cost to the individual organism, make up the largest component in many plant genomes, but their role in the genetics of speciation has long been controversial. However, the realization that many organisms have evolved a variety of suppressor mechanisms that reduce the deleterious effects of SGEs has spurred renewed interest in their importance for speciation. The relationship between SGEs and their suppressors often results in strong selection on at least two interacting loci and this arms race therefore creates a situation where SGEs may give rise to hybrid dysgenesis due to Bateson–Dobzhansky–Muller incompatibilities (BDMIs). Here, I argue that examples of SGEs underlying BDMIs may be particularly common among plants compared to other taxa and that a focus on loci involved in genetic conflicts may be especially useful for workers interested in the genetics of plant speciation. I first discuss why the frequent mating system shifts and hybridization events in plants make for a specifically dynamic relationship between SGEs and plant host genomes. I then review some recent empirical observations consistent with SGE-induced speciation in plants. Lastly, I suggest some future directions to test fully the utility of this perspective.     

Phylogenetic analysis of the 90 kD heat shock family of protein sequences and an examination of the relationship among animals, plants, and fungi species

The heat shock protein (Hsp) sequences, because of their ubiquity and high degree of conservation, provide useful models for phylogenetic analysis. In this paper I have carried out a global alignment of all available sequences (a total of 31) for the 90-kD heat shock protein (Hsp90) family. The minimum amino acid identity that is seen between presently known Hsp90 homologs is about 40% over the entire length, indicating that it is a highly conserved protein. Based on the alignment, a number of signature sequences that either are distinctive of the Hsp90 family or that distinguish between the cytosolic and the endoplasmic reticular forms of Hsp90 have been identified. Detailed phylogenetic analyses based on Hsp90 sequences reported here strongly indicate that the cytosolic and the endoplasmic reticulum (ER) resident forms of Hsp90 constitute paralogous gene families which arose by a gene duplication event that took place very early in the evolution of eukaryotic cells. A minimum of two additional gene duplication events, which took place at a later time, are required to explain the presence of two different forms of Hsp90 that are found in fungi and vertebrate species. In a consensus neighbor-joining bootstrap tree based on Hsp90 sequences, plants and animals species grouped together 989 times of 1,000 (a highly significant score), indicating a closer relationship between them as compared to fungi. A closer affiliation of plant and animal species was also observed in the maximum-parsimony tree, although the relationship was not significantly supported by this method. A survey of the recent literature on this subject indicates that depending on the protein sequence and the methods of phylogenetic analysis, the animal species are indicated as closer relatives to either plants or fungi with significant statistical support for both topologies. Thus the relationship among the animal, plant, and fungi kingdoms remains an unresolved issue at the present time.      

Animals,disease, and man: making connections

The intricate causal relationships between disease in man and disease in animals first began to be elucidated in the mid-19th century. Although the connections between animal and human disease are now generally understood, individuals as well as societies remain slow to act on this knowledge. This paper examines the gradual recognition of these disease connections and explores the parallel theme of man's reluctance to appreciate the implications of these connections. It identifies factors that have inhibited the realization of the links between disease in man and animals, and discusses several milestones in the scientific elucidation of these links. Beginning with emerging concerns over the relationship between bovine and human tuberculosis in the 1860s, it follows the discovery of insect vectors, animal reservoirs, and the links between animals, influenza, and man. Despite warnings of the potential significance for human disease of patterns of changes in the relationship with animals and the natural world, scientists have continued to treat human and animal health as largely independent disciplines, while historians too have neglected this important aspect of human disease.     

Monkeys into Men and Men into Monkeys: Chance and Contingency in the Evolution of Man, Mind and Morals in Charles Kingsley’s Water Babies

The nineteenth century theologian, author and poet Charles Kingsley was a notable populariser of Darwinian evolution. He championed Darwin’s cause and that of honesty in science for more than a decade from 1859 to 1871. Kingsley’s interpretation of evolution shaped his theology, his politics and his views on race. The relationship between men and apes set the context for Kingsley’s consideration of these issues. Having defended Darwin for a decade in 1871 Kingsley was dismayed to read Darwin’s account of the evolution of morals in Descent of Man. He subsequently distanced himself from Darwin’s conclusions even though he remained an ardent evolutionist until his death in 1875.     

Genodiagnosis and molecular typing of the pathogens for plague,cholera, and anthrax

The paper contains a survey of published data about the use of DNA-diagnostics in indicating and identifying the causative agents of highly dangerous infections like plague, cholera and anthrax. A discussion of data about the genetic relationship between strains of the mentioned causative agents isolated from different sources by using the molecular-typing methods as well as about the evolution ties between strains of different origins is in the focus of attention. Results of comparative studies of nucleotide sequences of genomes or of individual genomes in different Yersinia pestis, Vibrio cholerae and Bacillus anthracis strains, which are indicative of the evolution of their pathogenicity, are also under discussion.     

Dobzhansky's rule and reinforcement of pre-zygotic reproductive isolation in zones of secondary contact

It is well known that closely related sympatric species are usually more different in characters involved in species recognition (e.g., in visual and acoustic signals) than allopatric species of the same evolutionary age. In this article I call this phenomenon Dobzhansky's rule in accordance with the name of the scientist who first discovered it. There are two alternative explanations for this pattern. Under hypothesis of reinforcement by Dobzhansky, these species-specific differences evolve in situ, exactly in zone of overlap between two populations. Under hypothesis of differential fusion by Templeton, the differences originate in geographically separated regions, and only those populations that have evolved such differences can persist in secondary sympatry. These evolutionary scenarios are significantly different. The scenario by Dobzhansky is an essentially sympatric model, in which natural selection reinforces pre-zygotic isolation between divergent populations by selecting against unfit hybrids. The scenario by Templeton is based on classic allopatric speciation model that consider the formation of reproductive isolation to be a by-product of divergent evolution. In this work we show that the sympatric distribution of sister taxa of Agrodiaetus butterflies strongly correlates with differences in male wing colour. We also use a new quantitative phylogenetic test to distinguish between the models by Dobzhansky and by Templeton and to demonstrate that the pattern observed is, most likely, the result of reinforcement.