Oxidation of hydrogen sulfide by flocculated Thiobaccillus denitrificans in a continuous culture

In a continuous fermentation, significant advantages may be gained by immobilization of microbial cells. Immobilization allows cells to be retained in the fermenter or to be readily recovered and recycled. Therefore, the hydraulic retention time and the biomass retention time are decoupled. A novel cell immobilization has been developed for the immobilization of autotrophic bacteria by coculture with floc-forming heterotrophic bacteria with growth of the latter limited by the availability of organic carbon. The result is an immobilization matrix which grows along with the immobilized autotroph. We have previously demonstrated the utility of this approach by immobilizing the chemoautotroph Thiobacillus denitrificans in macroscopic floc by coculture with floc-forming heterotrophs from an activated sludge treatment facility. Floc with excellent settling characteristics were produced. These floc have now been used to remove H(2)S from a gas stream bubbled through continuous cultures. The stoichiometry and kinetics of H(2)S oxidation by immobilized T. denitrificans were comparable to that reported previously for free-cell cultures. Oxygen uptake measurements indicated the growth of both T. denitrificans and the heterotrophs although the medium contained no added organic carbon. Continuous cultures with total biomass recycle were maintained for up to four months indicating the long-term stability of the commensal relationship between the immobilized autotroph and the heterotrophs which composed the immobilization matrix. It was observed that at any given H(2)S loading the biomass concentration reached a maximum and leveled out. The ultimate biomass concentration was dependent upon the H(2)S feed rate.     

A simulation model of production,seasonal changes in biomass and distribution of eelgrass (Zostera marina) in Lake Grevelingen

Summary A simulation model has been described, based on data from Lake Grevelingen, The Netherlands, as a predictive tool for lake management. The model has been developed as part of a large-scale aquatic modelling effort in Lake Grevelingen, carried out in close cooperation with the Delft Hydraulics Laboratory and the Delta Department, Environmental Research Division of the Ministry of Transport and Public Works. Available data on growth rates per unit eelgrass biomass, obtained with the leaf-marking technique, and on above- en below ground biomass and shoot density changes per unit area have been used. A space limitation depending on density of the above ground biomass and a growth limitation due to shortage in below ground biomass have been introduced. The seasonal changes in eelgrass production, both above and below ground, have been simulated as functions of the external forcing variables light, water temperature, wind generated water movements and of the internal control variables due to aging of the plant material. The vertical distribution of eelgrass can be partly explained from the modelling results on space, light and below ground biomass limitations. From the shore down to about 1 m waterdepth the above ground eelgrass biomass suffers from space limitation. Between 1 and 2 m production and biomass reach maximum values. Between 2 and 3 m waterdepth the above ground eelgrass growth is limited by the availability of below ground biomass. Between 3 and 5 m waterdepth both below ground biomass and light are the growth-limiting factors. Below 5 m waterdepth light is not sufficient to sustain net growth of eelgrass from rhizomes. Together with additional data — not used in the model — on seed production and growth of eelgrass shoots from seeds the vertical and horizontal distribution of the dominant macrophyte in the lake can be explained.     

A symbiotic gas exchange between bioreactors enhances microalgal biomass and lipid productivities: taking advantage of complementary nutritional modes

This paper describes the association of two bioreactors: one photoautotrophic and the other heterotrophic, connected by the gas phase and allowing an exchange of O₂ and CO₂ gases between them, benefiting from a symbiotic effect. The association of two bioreactors was proposed with the aim of improving the microalgae oil productivity for biodiesel production. The outlet gas flow from the autotrophic (O₂ enriched) bioreactor was used as the inlet gas flow for the heterotrophic bioreactor. In parallel, the outlet gas flow from another heterotrophic (CO₂ enriched) bioreactor was used as the inlet gas flow for the autotrophic bioreactor. Aside from using the air supplied from the auto- and hetero-trophic bioreactors as controls, one mixotrophic bioreactor was also studied and used as a model, for its claimed advantage of CO₂ and organic carbon being simultaneously assimilated. The microalga Chlorella protothecoides was chosen as a model due to its ability to grow under different nutritional modes (auto, hetero, and mixotrophic), and its ability to attain a high biomass productivity and lipid content, suitable for biodiesel production. The comparison between heterotrophic, autotrophic, and mixotrophic Chlorella protothecoides growth for lipid production revealed that heterotrophic growth achieved the highest biomass productivity and lipid content (>22%), and furthermore showed that these lipids had the most suitable fatty acid profile in order to produce high quality biodiesel. Both associations showed a higher biomass productivity (10–20%), when comparing the two separately operated bioreactors (controls) which occurred on the fourth day. A more remarkable result would have been seen if in actuality the two bioreactors had been inter-connected in a closed loop. The biomass productivity gain would have been 30% and the lipid productivity gain would have been 100%, as seen by comparing the productivities of the symbiotic assemblage with the sum of the two bioreactors operating separately (controls). These results show an advantage of the symbiotic bioreactors association towards a cost-effective microalgal biodiesel production.     

Application of Artificial Neural Network for predicting biomass growth during domestic wastewater treatment through a biological process

The biological treatment process is responsible for removing organic and inorganic matter in wastewater. This process relies heavily on microorganisms to successfully remove organic and inorganic matter. The aim of the study was to model biomass growth in the biological treatment process. Multilayer perceptron (MLP) Artificial Neural Network (ANN) algorithm was used to model biomass growth. Three metrics: coefficient of determination (R²), root mean squared error (RMSE), and mean squared error (MSE) were used to evaluate the performance of the model. Sensitivity analysis was applied to confirm variables that have a strong influence on biomass growth. The results of the study showed that MLP ANN algorithm was able to model biomass growth successfully. R² values were 0.844, 0.853, and 0.823 during training, validation, and testing phases, respectively. RMSE values were 0.7476, 1.1641, and 0.7798 during training, validation, and testing phases respectively. MSE values were 0.5589, 1.3551, and 0.6081 during training, validation, and testing phases, respectively. Sensitivity analysis results showed that temperature (47.2%) and dissolved oxygen (DO) concentration (40.2%) were the biggest drivers of biomass growth. Aeration period (4.3%), chemical oxygen demand (COD) concentration (3.2%), and oxygen uptake rate (OUR) (5.1%) contributed minimally. The biomass growth model can be applied at different wastewater treatment plants by different plant managers/operators in order to achieve optimum biomass growth. The optimum biomass growth will improve the removal of organic and inorganic matter in the biological treatment process.     

The energetics of embryonic growth and development. I. Oxygen consumption, biomass growth, and heat production.

A quantitative phenomenological model to describe the relationships between biomass growth rate, oxygen consumption, and heat production in developing embryos has been developed and tested using a wide range of experimental data. The model employs generalized material and energy balances, principles of enzyme kinetics, and an overall metabolic model scheme based on known biochemical principles. The phosphorylation concentration ratio of ATP and ADP occurs naturally and becomes a significant parameter in the analysis. The model is applied to the growth of Escherichia coli, Oryzias latipes, chick spinal cord, and whole chicken eggs. Excellent agreement between the model and the experimental data is obtained. In a succeeding paper (Part II) environmental effects and growth efficiency are discussed.     

Physiological aspects and mechanism of action of mevalonate 5-diphosphate decarboxylase

1. This work reviews the present knowledge of the physiological role and mechanism of action of mevalonate 5-diphosphate decarboxylase, the third enzyme involved in the biosynthesis of cholesterol from mevalonic acid. 2. Published evidence indicates that this and other enzymes of the cholesterol biosynthetic pathway present coordinate fluctuations in activity in rat liver. A possible regulatory role for the brain decarboxylases from chicken and rat has been proposed. 3. From kinetic and stereochemical studies with the chicken liver enzyme it has been proposed that the reaction is initiated by the abstraction of a proton from the 3-hydroxyl group of mevalonate 5-diphosphate by a basic group in the enzyme, followed by the nucleophilic attack of the C-3 oxygen on P gamma of the lambda isomer of the beta, gamma bidentate MgATP2- in a SN2(P) reaction that goes with inversion of configuration at P.     

Macroscopic growth of filamentous fungi on solid substrate explained by a microscopic approach.

A quantitative model predicting biomass growth on solid media has been developed. The model takes into account steric interactions between hyphae and tips at the microscopic level (competition for substrate and tip-hypha collisions). These interactions effect a slowing down of the hyphal, population-averaged extension rate and are responsible, at the microscopic level, for the distribution of tip orientations observed at the colony border. At the macroscopic level, a limiting value of the colony radial extension rate is attained. A mathematical model that combines hyphal branching, tip diffusion, and biomass growth was proposed to explain such behavior. Experiments using Gibberella fujikuroi were performed to validate the model; good agreement between experiments and simulations was achieved. Most parameters can be measured by simple image analysis on the peripheral growth zone, and they have clear physical meaning; that is, they correspond to properties of single, leading hyphae. The model can be used to describe two-dimensional (2D) solid media fermentation experiments under varying culture conditions; the model can also be extended to consider growth in three-dimensional (3D), complex geometry substrates.     

The kinetics of Lagenidium giganteum growth in liquid and solid cultures

AIMS: Production of the mosquito biolarvacide Lagenidium giganteum in solid culture has been proposed as an economic alternative to production in liquid culture because of observations of improved shelf life and efficacy upon storage. Understanding the differences between these production systems and estimating growth rate in solid culture are important for commercialization. In order to address these needs a logistic model was developed to describe the growth kinetics of L. giganteum produced in solid and liquid cultures. METHODS AND RESULTS: Kinetic parameters in the logistic model were estimated by nonlinear regression of CO2 evolution rate (CER) and biomass data from solid and liquid cultivation experiments. Lagenidium giganteum biomass was measured using DNA extracted directly from samples. The logistic model was fit to experimental biomass and CER data with low standard errors for parameter estimates. The model was validated in two independent experiments by examining prediction of biomass using on-line CER measurements. CONCLUSIONS: There were significant differences between maximum biomass density, maintenance coefficients, and specific growth rates for liquid and solid cultures. The maximum biomass density (mg dw ml-1) was 11 times greater for solid cultivation compared with liquid cultivation of L. giganteum; however, the maintenance coefficient (mg CO2 h-1 (mg dw)-1) was six times greater for liquid cultivation than in solid cultivation. The specific growth rate at 30 degrees C was approximately 30% greater in liquid cultivation compared with solid cultivation. Slower depletion of substrate and lower endogenous metabolism may explain the longer shelf life of L. giganteum produced in solid culture. SIGNIFICANCE AND IMPACT OF THE STUDY: A simple logistic model was developed which allows real-time estimation of L. giganteum biomass from on-line CER measurements. Parameter estimates for liquid and solid cultivation models also elucidated observations of longer shelf life for production in solid culture.     

有机物料对污染土壤上水稻生长和重金属吸收的影响

采用盆栽试验,研究了施用有机碳源、菜籽饼和猪粪对污染土壤上水稻生长和重金属吸收特性的影响.结果表明： 施用菜籽饼和猪粪均能缓解重金属对水稻的毒害作用,促进水稻生长,显著增加地上部生物量和籽粒产量,降低糙米中重金属浓度;而有机碳源抑制水稻生长.与施用化肥相比,施用菜籽饼和猪粪处理的水稻籽粒产量分别增加128.3%和67.9%;施用菜籽饼处理的糙米Cd、Cu和Zn浓度分别降低47.6%、35.2%和21.5%,施用猪粪处理分别降低9.5%、21.2%和9.3%.土壤中DTPA提取态重金属浓度与水稻地上部生物量和重金属积累总量呈显著负相关.     

Amendments promote the development of Lolium perenne in soils affected by historical copper smelting operations

The Puchuncaví valley, central Chile, has been exposed to aerial emissions from a copper smelter. Nowadays, soils in the surroundings are sparsely-vegetated, acidic, and metal-contaminated, and their remediation is needed to reduce environmental risks. We assessed effectiveness of lime, fly ash, compost, and iron grit as amendments to immobilize Cu in soils and promote plant growth. Amended soils were cultivated with Lolium perenne for 60 days under controlled conditions. Total dissolved Cu and Cu2+ activity in the soil solution, ryegrass biomass, and Cu accumulation in plant tissues were measured. Addition of lime and fly ash decreased Cu concentrations and Cu2+ activity in the soil solution, increased plant biomass, and reduced shoot Cu concentration below 22 mg kg(-1) (the phytotoxicity threshold for the species). The most effective amendment with respect to the shoot biomass yield was a combination of lime and compost. Water content of the substrate and the K accumulation were positively correlated with the compost application rate. Compost combined with iron grit decreased dissolved Cu concentrations during the period of highest solubility, i.e., during the first 60 days after the compost application. However, iron grit incorporation into soils amended with lime and compost decreased the shoot biomass of ryegrass.     

Deterministic Three-Half-Order Kinetic Model for Microbial Degradation of Added Carbon Substrates in Soil

The kinetics of mineralization of carbonaceous substrates has been explained by a deterministic model which is applicable to either growth or nongrowth conditions in soil. The mixed-order nature of the model does not require a priori decisions about reaction order, discontinuity period of lag or stationary phase, or correction for endogenous mineralization rates. The integrated equation is simpler than the integrated form of the Monod equation because of the following: (i) only two, rather than four, interdependent constants have to be determined by nonlinear regression analysis, (ii) substrate or product formation can be expressed explicitly as a function of time, (iii) biomass concentration does not have to be known, and (iv) the required initial estimate for the nonlinear regression analysis can be easily obtained from a linearized form rather than from an interval estimate of a differential equation. ¹⁴CO₂ evolution data from soil have been fitted to the model equation. All data except those from irradiated soil gave better fits by residual sum of squares (RSS) by assuming growth in soil was linear (RSS = 0.71) as opposed to exponential (RSS = 2.87). The underlying reasons for growth (exponential versus linear), no growth, and relative degradation rates of substrates are consistent with the basic mechanisms from which the model is derived.     

旱地小麦理想株型与生长冗余

自1968年Donald提出作物理想株型(ideotype)以来,众多学者在如何减少生长冗余、塑造理想株型方面做了大量努力,在旱地小麦育种策略和栽培管理模式创新方面取得了一定进展。而该方面的进展有限,不同领域的研究者对理想株型和生长冗余的认识存在严重分歧。综述了近年来旱地小麦理想株型研究进展,以过去20年黄土高原雨养农业区的观测数据为主进行了集成分析,将产量分别与根系生物量、地上生物量和株高等指标进行回归分析,勾画了旱地小麦在根系、茎秆和分蘖等器官中生长冗余的演变趋势,对生长冗余产生的生态学机制展开了分析,并对理想株型与生长冗余的互作关系进行了讨论。已有的研究进展表明,旱地小麦理想株型演变是一个不断消减生长冗余,但又无法完全消除冗余的复杂过程,一定程度的冗余存在是理想株型发生的物质基础。旱地小麦理想株型育种必须以基因型和环境互作关系为基础,通过减少个体间的竞争强度和个体大小不整齐性,促进物质和能量更多地向籽粒迁移,最终提高种群产量。综上所述,旱地小麦理想株型选择需建立在生长冗余理论基础上,根据生态学基本原理对基因型和表现型进行耦合分析与选择权衡。     

The binding of calmodulin to myelin basic protein and histone H2B.

1. A calmodulin-binding protein of apparent mol.wt. 19 000 has been purified from chicken gizzard. Similar proteins have been isolated from bovine uterus, rabbit skeletal muscle and rabbit liver. 2. These proteins migrated as an equimolar complex with bovine brain calmodulin on electroporesis on polyacrylamide gels in the presence of Ca2+ and 6M-urea. The complex was dissociated in the presence of EGTA. 2. The chicken gizzard calmodulin-binding protein has been shown to be identical with chicken erythrocyte histone H2B on the basis of partial amino acid sequence determination. 4. The calmodulin-binding proteins of apparent mol.wt. 22 000 isolated previously from bovine brain [Grand & Perry (1979) Biochem. J. 183, 285-295] has been shown, on the basis of partial amino-acid-sequence determination, to be identical with myelin basic protein. 5. The activation of bovine brain phosphodiesterase by calmodulin is inhibited by excess bovine uterus calmodulin-binding protein (histone H2B). 6. The phosphorylation of myelin basic protein by phosphorylase kinase is partially inhibited, whereas the phosphorylation of uterus calmodulin-binding protein (histone H2B) is unaffected by calmodulin or troponin C. 7. The subcellular distribution of myelin basic protein and calmodulin suggests that the two proteins do not exist as a complex in vivo.     

Efficacy of lime, biosolids, and mycorrhiza for the phytostabilization of sulfidic copper tailings in Chile: a greenhouse experiment

Inadequate abandonment of copper mine tailings under semiarid Mediterranean climate type conditions has posed important environmental risks in Chile due to wind and rain erosion. There are cost-effective technologies for tailings stabilization such as phytostabilization. However, this technology has not been used in Chile yet. This study evaluated in a greenhouse assay the efficacy of biosolids, lime, and a commercial mycorrhiza to improve adverse conditions of oxidized Cu mine tailings for adequate establishment and grow of Lolium perenne L. var nui. Chemical characterization of experimental substrates and pore water samples were performed; plant density, biomass production, chlorophyll content, and metal content in shoots was evaluated in rye grass plants after an eight-week growth period. Results showed that neutralization of tailings and superficial application of biosolids increased both aerial biomass production and chlorophyll content of rye grass. Increased Cu solubilization and translocation to shoots occurred after biosolids application (mixed), particularly on unlimed tailings, due to formation of soluble organometallic complexes with dissolved organic carbon (DOC) which can be readily absorbed by plant roots. Positive effects of mycorrhizal inoculation on rye grass growth were restricted to treatments with superficial application of biosolids, probably due to Cu toxicity effects on commercial mycorrhiza used (Glomulus intraradices).     

Modified extended aeration process for removal and recovery of cadmium from wastewaters

It has been reported in the literature that several microbial species have a considerable sorption capacity for heavy metals. Work herein reported, accomplished using a heterogeneous microbial population developed in a modified extended aeration activated sludge process, indicates sorption capabilities as good as, or better than, those for individual microbial species. The process herein described may have several advantages over pure or controlled culture processes and it offers the possibility for reuse of organic matter needed to regenerate metal-sorbing biomass, as well as autodigestion of excess biomass. The work also indicates that acclimation to high levels of a specific heavy metal (Cd) does not confer acclimation to another heavy metal (Cu).     

Community biomass of abandoned farmland and its effects on soil nutrition in the Loess hilly region of Northern Shaanxi, China

In order to have a basic knowledge of revegetation, one needs to deepen his understanding of the interactive effects of vegetation and soil. In this article, aboveground biomass, soil nutrients and moisture of 36 old-fields with different abandonment ages (from 2 to 45 years after abandonment), aboveground biomass of 4 typical old-fields, and growth characteristics of 7 predominant old-field species were measured. Changing pace, trend and relationship of community aboveground biomass and soil nutrition during the secondary succession were evaluated; effects of soil nutrition on community aboveground biomass were analyzed using multivariable analysis and pathway analysis, and effects of aboveground biomass on soil nutrition were further discussed. The results show that: (1) Soil nutrients, including organic matter, total nitrogen, total phosphorus, total potassium, nitrate nitrogen, ammonium nitrogen, active phosphorus and active potassium, have the same changing pace and trends as the aboveground biomass. In the process of secondary succession, both the soil nutrition and the community aboveground biomass decreased in the earlier abandonment stage of succession and then increased subsequently. (2) On the basis of the correlation of soil nutrients and abandonment ages, effects of vegetation on 0–20 cm organic matter, active phosphorus, 0–20 cm and 20–40 cm nitrate nitrogen nutrition are significant, while on the basis of the correlation of soil nutrition and aboveground biomass, no significant effects were observed. Hereinbefore, aboveground biomass accounts for only a part of vegetation-soil nutrition effects. The effects of biomass on organic matter, total nitrogen, total phosphorous, total potassium, nitrate nitrogen, active potassium and phosphorous are positive, whereas for ammonium nitrogen it is negative. (3) Abandonment ages, total nitrogen, total potassium, active potassium and soil moisture fluctuation have direct positive effects on the aboveground biomass of old-field communities; abandonment and soil moisture fluctuation have lager effects. Each ingredient of soil nutrition has relatively small effect, among which total nitrogen has larger effects than total and active potassium. The changes in aboveground biomass of old-field communities during succession are caused mainly by the changes in coverage and ecological characteristics of community species (the relatively larger direct effects of abandonment ages), and secondly by the soil moisture fluctuation (the relative smaller indirect effect of abandonment ages through soil moisture). (4) As a dependent variable, belowground biomass approaches power function of soil depth and declines in deeper layer. The root/shoot ratio of communities tends to increase in later succession stages, which also has an increasing tendency. These may influence the accumulation of biomass and decomposition of organic matter, and the vegetation-soil effects may be different.     

Effect of Organic Manures on the Growth of Cymbopogon citratus and Chrysopogon zizanioides for the Phytoremediation of Chromite-Asbestos Mine Waste: A Pot Scale Experiment

The abandoned chromite-asbestos mines are located in the Roro hills, West Singhbhum, Jharkhand, India, where mining operation ceased in 1983, and since then these mines are causing environmental pollution. The present study was planned to phytoremediate these metalloid and metal contaminated mine waste by using two aromatic grasses, Cymbopogon citratus and Chrysopogon zizanioides by applying different proportions of amendments (chicken manure, farmyard manure and garden soil). Mine waste has neutral pH, low electrical conductivity and organic carbon with higher concentration of total metals (Cr and Ni) as compared to soil. Application of manures resulted significant improvements of mine waste characteristics and plant growth, reduction in the availability of total extractable toxic metals (Cr, Ni) and increase in Mn, Zn and Cu concentration in the substrate. The maximum growth and biomass production for C. citratus and C. zizanioides were found in T-IV combination comprising of mine waste (90%), chicken manure (2.5%), farmyard manure (2.5%) and garden soil (5%). Addition of T-IV combination also resulted in low Cr and Ni accumulation in roots and reduction in translocation to shoots. Study indicates that C. citratus and C. zizanioides can be used for phytostabilization of abandoned chromite-asbestos mine waste with amendments.     

Design of a nutrient medium for bacteria of the genus Haemophilus--producers of restriction endonucleases

A culture medium for the cultivation of hemophilic bacteria, containing acidic casein hydrolysate, aminopeptide and fodder yeast extract, has been proposed. The growth-stimulating properties of this medium have been studied on 5 strains producing restrictases differing in their specificity. In growing these producer strains in a model ANKUM-2 fermenter with the supply of carbohydrate substrates (glucose, sucrose, glycerin) the yield of biomass, considered to be high for hemophilic bacteria (10-14 g of humid substance from 1 liter of the medium), has been achieved. As shown on H. influenzae Rc B-2297 used as an example, an increase in the yield of microbial biomass leads to a decrease in restrictase specific activity.     

Removal of copper by Pseudomonas putida strain S4 isolated from copper mines

A bacterial strain, Pseudomonas putida S4, was isolated from smelter drainage of copper mines. The strain exhibited resistance to several heavy metals, like aluminium (Al), zinc (Zn), nickel (Ni), cobalt (Co) besides copper (Cu). Strain S4 could accumulate Cu from the Cu-supplemented growth medium. In the present study, we have demonstrated the Cu2+ removal capacity of this strain from various samples such as mine effluent, low-grade ore and ore-tailings, collected from the mining site. Moreover, approximately 80% of the accumulated Cu2+ could be recovered from the loaded biomass by a simple desorption procedure.