Detection of Differences in Surface-charge-associated Properties of Cells by Partition in Two-polymer Aqueous Phase Systems

WHEN aqueous solutions of two polymers are mixed in certain proportions they may form two-phase systems^1,2 which can be buffered and used to partition and separate cells, particles and macromolecules by countercurrent distribution (CCD). Partition generally depends on polymer composition and concentration, the ionic composition and the charge sign of the material being partitioned. Such systems have been used to separate erythrocytes from white cells and erythrocytes on the basis of age. Changes in the surface properties of cells resulting from enzyme treatment or storage have also been demonstrated by this means³. Higher cell partition often accompanies increasing electrophoretic mobility which suggests that surface charge may be an important factor in partitioning^4–6. An apparent exception to this is the increased partition of stored human erythrocytes as compared with fresh⁷, as opposed to the mean electrophoretic mobility of both cell populations which remain identical⁸.     

Species-specific aggregation factor in sponges

Summary Isolated cells from the siliceous spongeGeodia cydonium have been studied with respect to their partition behaviour in a two-phase aqueous polymer system. With this method it is possible to determine subtle changes in the cell surface charge. Addition of a homologous aggregation factor to the isolated cells lowers the partition rate, a finding which indicates that after binding of the aggregation factor to the cells their surface charge is reduced. The partition rate of the cells is strongly correlated with their content of membranebound sialic acid.Sixty-nine percent of the total, membrane-bound hexuronic acid is associated with the aggregation receptor; 1.8×10⁷ aggregation receptor molecules are present on the surface of one cell which means that the average surface density amounts to 2.8×10⁵ molecules per m².Removal of the aggregation receptor molecules from the cell surface results in a decrease of the partition rate in the two-phase system. After charging the receptor-depleted cells with soluble aggregation receptor, the partition behaviour of these cells can be reconstituted.Abbreviations used CMF calcium- and magnesium-free artificial sea water - CMFE CMF plus EDTA - ASW calcium- and magnesium-containing artificial sea water     

Potentiometric Studies on Interactions of α-L-glutamic Acid Oligomers with Cu(II) in aqueous Solutions

Four oligomers of α-L -glutamic acid with ends blocked by nonionizable protecting groups were studied in 0.1M NaClO₄ solution using potentiometric measurements. The titrations were analyzed using a pit-mapping method. The results are compared with those obtained with the corresponding polymer. The successive dissociation constants of the carboxylic side chains are obtained for oligomers with degrees of polymerization varying from 1 to 6. Then the successive stability constants corresponding to the association Cu²⁺–oligomer are given, and the M_pH_qL_r distribution is calculated for each oligomer introducing MH_qL complexes.     

Detection of surface differences between two closely related cell populations by partitioning isotopically labeled mixed cell populations in two-polymer aqueous phases

The partition behavior of cells in dextran-poly(ethylene glycol) aqueous phases (i.e., the cells' relative affinity for the top or bottom phase or their adsorption at the interface) is greatly dependent on the polymer concentrations and ionic composition and concentration. Appropriate selection of phase system composition permits detection of differences in either charge-associated or lipid-related surface properties. We have now developed a method that can reveal differences by partitioning that fall within experimental error if one were to compare countercurrent distribution (CCD) curves of two closely related cell populations run separately. One cell population is isotopically labeled in vitro (e.g., with⁵¹Cr-chromate) and is mixed with an excess of the unlabeled cell population with which it is to be compared. The mixture is subjected to CCD and the relative specific radio-activities are determined through the distribution. As control we also examine a mixture of labeled cells and unlabeled cells of the same population. The feasibility of this method was established by use of cell mixtures the relative partition coefficients of which were known. The procedure was then used to test for human erythrocyte subpopulations⁵¹Cr-chromate-labeled human young or old red blood cells were mixed with unfractionated erythrocytes and subjected to CCD in a phase system reflecting charge-associated properties. It was found that older cells had a high, young cells (probably only reticulocytes) a low partition coefficient. Because of the small differences involved these results were not previously obtained. It was further determined, by repartitioning⁵¹Cr-labeled cells from the left or right ends of a CCD of human red blood cells admixed to unlabeled unfractionated erythrocytes, that a subpopulation with higher partition coefficient exists (probably constituting the old red cells). These experiments serve to illustrate (a) that human red blood cells, contrary to a previous report, can be subfractionated by partitioning and (b) the usefulness of this new method in detecting smaller surface differences between closely related cell populations than was heretofore possible by partitioning alone.     

两相法分离纯化橡胶树树皮质膜

橡胶树树皮质膜H~+-ATPase在橡胶树产排胶过程中扮演着重要角色,制备高纯度及高活性的质膜是研究质膜H~+-ATPase特性和功能的必要条件。该研究以一年生巴西橡胶树(Hevea brasiliensis)树皮为材料,利用差速离心法获得粗膜微粒体,通过两相分配法分离纯化质膜,并研究两相体系中不同浓度聚合物(5.9%、6.1%、6.3%、6.5%、6.7%,W/W)和KCl(2、5、8、11、14 mmol·L~(-1))对质膜蛋白得率和纯化效率的影响。通过Bradford法对质膜蛋白得率进行检测,同时采用酶活性检测法对质膜纯度进行检测,分析结果表明选用6.4%(W/W)聚合物浓度和5mmol·L~(-1)KCl组成的两相体系可获得较高纯度和得率的橡胶树树皮质膜。通过电镜观察法在形态学上对质膜纯度进一步评价,利用铅铀能侵染全部膜组分使其染色,而磷钨酸只能专一性地侵染质膜并使其染色这一特性,分别使用铅铀和磷钨酸对切片进行染色,并通过透射电镜对切片染色程度进行直接观察,结果表明提取的粗膜微粒体中质膜组分较少,存在大量的细胞器膜污染,而纯化后的质膜膜组分较单一,其他膜组分污染较少,而且质膜大小较均一,可以用于进行后续橡胶树树皮质膜H~+-ATPase特性和功能的研究。     

Transformation of ferulic acid to vanillin using a fed‐batch solid–liquid two‐phase partitioning bioreactor

Amycolatopsis sp. ATCC 39116 (formerly Streptomyces setonii) has shown promising results in converting ferulic acid (trans‐4‐hydroxy‐3‐methoxycinnamic acid; substrate), which can be derived from natural plant wastes, to vanillin (4‐hydroxy‐3‐methoxybenzaldehyde). After exploring the influence of adding vanillin at different times during the growth cycle on cell growth and transformation performance of this strain and demonstrating the inhibitory effect of vanillin, a solid–liquid two‐phase partitioning bioreactor (TPPB) system was used as an in situ product removal technique to enhance transformation productivity by this strain. The thermoplastic polymer Hytrel^® G4078W was found to have superior partitioning capacity for vanillin with a partition coefficient of 12 and a low affinity for the substrate. A 3‐L working volume solid–liquid fed‐batch TPPB mode, using 300 g Hytrel G4078W as the sequestering phase, produced a final vanillin concentration of 19.5 g/L. The overall productivity of this reactor system was 450 mg/L. h, among the highest reported in literature. Vanillin was easily and quantitatively recovered from the polymers mostly by single stage extraction into methanol or other organic solvents used in food industry, simultaneously regenerating polymer beads for reuse. A polymer–liquid two phase bioreactor was again confirmed to easily outperform single phase systems that feature inhibitory or easily further degraded substrates/products. This enhancement strategy might reasonably be expected in the production of other flavor and fragrance compounds obtained by biotransformations. © 2013 American Institute of Chemical Engineers Biotechnol. Prog., 30:207–214, 2014     

The growth of sickle hemoglobin polymers

The measurement of polymer growth is an essential element in characterization of assembly. We have developed a precise method of measuring the growth of sickle hemoglobin polymers by observing the time required for polymers to traverse a photolytically produced channel between a region in which polymers are created and a detection region. The presence of the polymer is functionally detected by observing its ability to create new polymers through the well-established process of heterogeneous nucleation. Using this method, we have determined the rate constants for monomer addition to and release from polymer ends, as well as their temperature dependences. At 25°C we find k₊ = 84 ± 2 mM⁻¹ s⁻¹ and k₋ = 790 ± 80 molecules/s from each end. These numbers are in accord with differential interference contrast measurements, and their ratio gives a solubility measured on individual fibers. The single-fiber solubility agrees with that measured in sedimentation experiments. The concentration dependence of the monomer addition rate is consistent with monomer addition, but not oligomer addition, to growing polymers. The concentration dependence suggests the presence of an activation enthalpy barrier, and the rate of monomer addition is not diffusion-limited. Analysis of the temperature dependence of the monomer addition rate reveals an apparent activation energy of 9.1 ± 0.6 kcal/mol.     

A semiempirical extension of polyelectrolyte theory to the treatment of oligoelectrolytes: Application to oligonucleotide helix-coil transitions

The interaction of counterions with a suitably long, charged oligomer appears susceptible to treatment in the context of polyelectrolyte theory by the introduction of an end-effect parameter that reflects the reduced association of counterions with the terminal regions of the oligo-ion. Use of a physically reasonable value for the end-effect parameter provides excellent agreement between theory and the experimental data of Elson, Scheffler, and Baldwin [J. Mol. Biol. 54 , 401–415 (1970)] on the dependences of melting temperature on salt concentration and chain length for a series of hairpin helices formed by d(TA) oligomers. The differences in behavior expected for hairpin, dimer, and oligomer-polymer helices are discussed. The salt dependence of the end-joining equilibrium investigated for λ DNA by Wang and Davidson [Cold Spring Harbor Symp. Quant. Biol. 33 , 409–415 (1968)] is treated as an oligomer–polymer interconversion. The dependence of equilibrium constant for this reaction on counterion concentration is in good agreement with that predicted by theory for an end-region totalling 24 nucleotides, the known length of the λ ends.     

Residue-specific mobility changes in soluble oligomers of the prion protein define regions involved in aggregation

Prion (PrP) diseases are neurodegenerative diseases characterized by the formation of β-sheet rich, insoluble and protease resistant protein deposits (called PrP^Sc) that occur throughout the brain. Formation of synthetic or in vitro PrP^Sc can occur through on-pathway toxic oligomers. Similarly, toxic and infectious oligomers identified in cell and animal models of prion disease indicate that soluble oligomers are likely intermediates in the formation of insoluble PrP^Sc. Despite the critical role of prion oligomers in disease progression, little is known about their structure. In order, to obtain structural insight into prion oligomers, we generated oligomers by shaking-induced conversion of recombinant, monomeric prion protein PrP^c (spanning residues 90–231). We then obtained two-dimensional solution NMR spectra of the PrP^c monomer, a 40% converted oligomer, and a 94% converted oligomer. Heteronuclear single-quantum correlation (¹H–¹⁵N) studies revealed that, in comparison to monomeric PrP^c, the oligomer has intense amide peak signals in the N-terminal (residues 90–114) and C-terminal regions (residues 226–231). Furthermore, a core region with decreased mobility is revealed from residues ~127 to 225. Within this core oligomer region with decreased mobility, there is a pocket of increased amide peak signal corresponding to the middle of α-helix 2 and the loop between α-helices 2 and 3 in the PrP^c monomer structure. Using high-resolution solution-state NMR, this work reveals detailed and divergent residue-specific changes in soluble oligomeric models of PrP.     

5CN05 partitioning in an aqueous two-phase system: A new approach to the solubilization of hydrophobic drugs

Liquid–liquid extraction for the purification of molecules has been central to many advances in the pharmaceutical industry. These processes were developed based on the property that some polymer and/or micellar solutions present to separate into a concentrated phase and a diluted phase. Based on the differences in the physical and chemical environments of the two coexisting phases, and since both phases contain approximately 60–90% of water, liquid–liquid extraction provides a powerful alternative to both extract and solubilize a molecule. This paper examines the partition behavior of the synthetic drug, 2-[(3,4-dichlorine-benzylidene)-amino]-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile (5CN05), in an aqueous two-phase polymer system (ATPPS) and also in an aqueous two-phase micellar system (ATPMS). The results showed that both systems are favorable for extraction the 5CN05 drug high partition coefficient values (K_5CN05 > 200) and yield (Y_5CN05 > 99.48%) in the concentrated phase were achieved with the systems. However, the ATPPS generated a partition coefficient (K_5CN05) higher than the one obtained with ATPMS. The results suggest that both processes may be used for the extraction and concentration of molecules with hydrophobic characteristics, such as 5CN05. They also provide an optimal environment for the solubilization of such molecules, allowing for greater efficiency when purifying many classes of drugs.     

Bioproduction of the aroma compound 2‐Phenylethanol in a solid–liquid two‐phase partitioning bioreactor system by Kluyveromyces marxianus

The rose‐like aroma compound 2‐phenylethanol (2‐PE) is an important fragrance and flavor ingredient. Several yeast strains are able to convert l ‐phenylalanine (l ‐phe) to 2‐PE among which Kluyveromyces marxianus has shown promising results. The limitation of this process is the low product concentration and productivity primarily due to end product inhibition. This study explored the possibility and benefits of using a solid–liquid Two‐Phase Partition Bioreactor (TPPB) system as an in situ product removal technique. The system applies polymer beads as the sequestering immiscible phase to partition 2‐PE and reduce the aqueous 2‐PE concentration to non‐inhibitory levels. Among six polymers screened for extracting 2‐PE, Hytrel® 8206 performed best with a partition coefficient of 79. The desired product stored in the polymer was ultimately extracted using methanol. A 3 L working volume solid–liquid batch mode TPPB using 500 g Hytrel® as the sequestering phase generated a final overall 2‐PE concentration of 13.7 g/L, the highest reported in the current literature. This was based on a polymer phase concentration of 88.74 g/L and aqueous phase concentration of 1.2 g/L. Even better results were achieved via contact with more polymers (approximately 900 g) with the aqueous phase applying a semi‐continuous reactor configuration. In this system, a final 2‐PE concentration (overall) of 20.4 g/L was achieved with 1.4 g/L in the aqueous and 97 g/L in the polymer phase. The overall productivities of these two reactor systems were 0.38 and 0.43 g/L h, respectively. This is the first report in the literature of the use of a polymer sequestering phase to enhance the bioproduction of 2‐PE, and exceeds the performance of two‐liquid phase systems in terms of productivity as well as ease of operation (no emulsions) and ultimate product recovery. Biotechnol. Bioeng. 2009; 104: 332–339 © 2009 Wiley Periodicals, Inc.     

Solid-state CP/MASS 13C-NMR spectroscopy: a sensitive method to monitor enzymatic hydrolysis of chitin

The time-course hydrolysis of colloidal chitin by the chitinase complex isolated from Myrothecium verrucaria was monitored using solution and solid-state ¹³C-NMR spectroscopy. The solution NMR studies showed the presence of N-acetylglucosamine (GlcNAc) as the sole product of hydrolysis. Solid-state ¹³C CP/MASS studies, on the other hand, indicated the presence of high molecular weight oligomers as well as GlcNAc. The linewidth of the C₁ carbon of the oligomers obtained after hydrolysis is found to be less than that of the unhydrolysed sample. The linewidths calculated from the spin-spin relaxation times (T₂) of colloidal chitin and its products of hydrolysis were in the restricted range of 40–50 Hz, compared with the observed linewidths of 143–123 Hz. Peak area measurement on monomer to polymer/oligomer indicated an initial slow formation of the monomer, GlcNAc. From the NMR data, the involvement of endo-enzymes in the initial phase of hydrolysis is suggested.     

On the helix-coil equilibrium in two- and three-stranded complexes involving complementary poly- and oligonucleotides

The helix–coil equilibrium in molecular complexes formed between long homopoly-nucleotides and short complementary oligonucleotides is discussed. Each oligomer is allowed to bind to polymer(s) in an all-or-none fashion. The formal treatment of Lifson and Zimm is used as a basis for derivations. Approximations for long polymer(s) yield simple formulae describing the transition. The theory is applied to both a two-stranded complex (i.e., a complex, one strand of which is a long polymer and the other of which consists of a number of short oligomers) and to a three-stranded complex (i.e., a complex, two strands of which are long polymers and the third of which consists of a number of short oligomers). For the two-stranded complex, simple expressions result for average quantities when the interruption constant is much smaller than unity. For the three-stranded complex the matching and the mismatching models are considered in the case where the non-bonded segments of polymer chains may form closed loops, and it is shown that true phase transitions occur under certain conditions. For a highly cooperative transition the slope of the melting curve is shown to be independent of the cooperativity parameter, provided that residue molar concentrations of the polymer and oligomer are of comparable magnitude. It is thus possible to obtain the enthalpy of the transition directly from the slopes of the melting curves. Some experimental results on two- and three-stranded complexes are compared with the theory and yield the enthalpy and the entropy for the formation of base pairs and triplets.     

The stoichiometry of the chloroplast ATP synthase oligomer III in Chlamydomonas reinhardtii is not affected by the metabolic state

The chloroplast H⁺-ATP synthase is a key component for the energy supply of higher plants and green algae. An oligomer of identical protein subunits III is responsible for the conversion of an electrochemical proton gradient into rotational motion. It is highly controversial if the oligomer III stoichiometry is affected by the metabolic state of any organism. Here, the intact oligomer III of the ATP synthase from Chlamydomonas reinhardtii has been isolated for the first time. Due to the importance of the subunit III stoichiometry for energy conversion, a gradient gel system was established to distinguish oligomers with different stoichiometries. With this methodology, a possible alterability of the stoichiometry in respect to the metabolic state of the cells was examined. Several growth parameters, i.e., light intensity, pH value, carbon source, and CO₂ concentration, were varied to determine their effects on the stoichiometry. Contrary to previous suggestions for E. coli, the oligomer III of the chloroplast H⁺-ATP synthase always consists of a constant number of monomers over a wide range of metabolic states. Furthermore, mass spectrometry indicates that subunit III from C. reinhardtii is not modified posttranslationally. Data suggest a subunit III stoichiometry of the algae ATP synthase divergent from higher plants.     

Solute binding curves for (two polymer + solute)-complex systems. I. "One-solute-stack" systems

The matrix method is used for calculating the grand partition function for the reaction: 2 polymer + solute = complex. The homogeneous polymers are assumed to have two types of sites within each nucleotide unit: sites for the polymer–polymer association, i.e., (p-p) sites; sites for polymer–solute association i.e., (p-s) sites. The respective binding parameters, P and F , and nearest-neighbor interaction parameters, W and S , are assumed independent. Complications due to ring entropy are avoided by rest riding the model to one-solute-stack systems, which are physically realizable when the reciprocal of the solute cooperativity parameter is much larger than the number of nucleotides in the polymer. The 4 × 4 generating matrix is shown to be a tensor product of two 2 × 2 matrices, each the generating matrix of a particular type of site. The scalar product of the 4 × 4 matrix is shown to be equivalent to the scalar product of a 2 × 2 matrix in the weak interaction limit, W ≈ 0. Calculations are presented for the general case which restricts the (p-s) association to occur only with (p-p) associated nucleotide units. The nature of the binding curve in relation to partitioning the total interaction energy (F + P + S + W ) among the parameters is discussed. Also presented is a criterion for neglecting possible states in the calculation of the grand partition function.     

Conformational perturbation due to an extra adenosine in a self-complementary oligodeoxynucleotide duplex

The conformation of an oligodeoxynucleotide pentadecamer, d(CGCGAAATTTACGCG), self-complementary except for an additional adenosine nucleotide at position 11, has been investigated with nmr spectroscopy. This oligomer was found to exist predominantly in the duplex form in solution rather than in the hairpin loop form, as observed previously for an analogous 13-mer sequence. Nuclear Overhauser effects indicate that the B-form conformation is disrupted by the extra A base, which forms a wedge within the duplex, producing a bent junction and an overall S-like structure. A downfield-shifted phosphate resonance was assigned using a two-dimensional ¹H–³¹P correlation method, and was found to be P12-13. This and other results indicate that the extra A causes conformational distortions at some distance along the duplex structure.     

Assay methods for methyl farnesoate esterases in crustaceans

Methyl farnesoate (MF) is a sesquiterpenoid that is synthesized by crustaceans and is structurally similar to the insect juvenile hormones. MF is metabolized to farnesoic acid by carboxylesterases present in crustacean tissues. In order to investigate the biological significance of MF metabolism, we have developed two rapid methods for measuring MF esterase activity. The first method is a radiochemical partition assay that utilizes an authentic substrate. The [³H]MF partition assay was used to evaluate the spectrophotometric esterase substrates methyl 1-heptylthioacetothioate (HEPTAT) and methyl 1-pentylthioacetothioate (PENTAT) for use with crude and partially purified samples of MF esterases from lobster hepatopancreas (midgut gland). The spectrophotometric method is less specific for MF esterases than the partition assay but is less time consuming and nonradioactive, and it provides kinetic information. HEPTAT and PENTAT were suitable for rapid screening of chromatographic fractions for MF esterase activity. Arch. Insect Biochem. Physiol. 36:115–128, 1997. © 1997 Wiley-Liss, Inc.     

Cooperative monomer binding by polynucleotides. Effect of multiple-loop configurations on formation of triple-stranded complexes

Simulated binding curves for the reaction 2 polymer + monomer = triple-stranded complex are presented, in which loop formation and sliding degeneracy of the polymer adsorption surface are considered. Exact calculations for a polymer chain length N of 11 units suggest that configurations of two or more loops have negligible effect on the isotherm when SW > 1, where S and W are exponential weighting factors for monomer–monomer S and polymer–polymer W nearest neighbor interactions. There is a pronounced effect, however, when SW ? 1. Limiting expressions (N ? 1, but finite) for the single-loop configurations suggest these configurations are negligible at any degree of saturation θ if θ (1 ? θ)^2–k N^3–k ? SW, where k is defined by the weighting factor (j + 1)^?k for a ring of j units. This expression suggests that single monomer-stack configurations are the only significant contributors to the grand partition function at the midpoint of the isotherm if N^3–k ? SW. Furthermore, single-loop configurations are negligible below θ = 0.5 but become dominant above the isotherm midpoint when SW ～ 1 (random binding) if 2 < k < 3. For k > 3 and N → ∞, loop configurations have no effect in any region of the random binding isotherm usually analyzed experimentally (θ < 0.95). Equivalence of matrix and sequence generating methods is also demonstrated.     

Effects of chemical modifications in the partition behavior of proteins in aqueous two‐phase systems: A case study with RNase A

Chemical modification of proteins is gaining importance due to the improvement in properties and the broader range of applications that these protein conjugates have. Once modified, several purification strategies need to be applied to isolate the conjugates of interest. Aqueous two‐phase systems (ATPS) are an attractive alternative for the primary recovery of proteins and their conjugates. However, to better understand which biochemical parameters affect in greater degree the partition behavior of these modified proteins in ATPS, it becomes necessary to characterize the partition behavior of different species. In this work, ribonuclease A (RNase A) was selected as a model protein to address the partition behavior of chemically modified proteins in ATPS. Native, mono‐PEGylated, Uniblue A, Dabsyl Chloride, and Direct Red 83 chemically modified RNase A's were partitioned in 16 different polyethylene glycol (PEG)–potassium phosphate ATPS. Results suggest that while the effects of system design parameters govern the partition of native RNase A, the behavior of the chemically modified species is more influenced by the physicochemical characteristics of the modifying molecules, that in most cases promote partition toward the top polymer‐rich phase with recovery percentages as high as 86%. It has been found that both, the hydrophobicity and molecular weight of the modifying species play a preponderant role in conjugate partition behavior since as hydrophobicity increases partition is promoted towards the PEG‐rich phase balancing the effect of the molecular weight of the modifying molecules that tends to shift partition towards the salt rich phase. © 2013 American Institute of Chemical Engineers Biotechnol. Prog., 29: 378–385, 2013     

Infrared studies of stereoregularity of copoly(γ-benzyl-D,L-glutamate) by the polymerization of the N-carboxylic anhydride

The D and L copolymerizations of γ-benzyl glutamate N-carboxylic anhydride (NCA) were carried out by two different initiators, n-butylamine and sodium methoxide. The stereoregularity of the polymer was examined by infrared spectroscopy in the region 700–200 cm^?1. A remarkable difference was found between the polymers obtained by these initiators in the region 450–400 cm^?1. In the polymer obtained with sodium methoxide as initiator, the 409-cm^?1 peak assigned to local α-helical conformation was not greatly affected by the amount of the L -form, but in the polymer obtained by n-butylamine this peak was much affected by the variation of L -content. This indicates that the stereo-selectivity of the polymerization in the sodium methoxide initiated system is higher than that in the n-butylamine initiated system.