Facts and fiction about sulfur metabolism in relation to plant-pathogen interactions

Sulfur deficiency developed into a widespread nutrient disorder in the 1980s because of the drastic decrease of SO(2) emissions in western Europe after Clean Air Acts came into force. It was observed that not only the yield and quality of agricultural crops were negatively affected by sulfur deficiency but also their health status. Since the mid 1990s the physiological background of this latter phenomenon in the sulfur metabolism has been studied by different researchers. From 2001 until 2006, field trials with different varieties of oilseed rape were conducted in Germany, and also from 2001 until 2003 in Scotland, to investigate the underlying mechanisms of sulfur-induced resistance and to develop fertiliser strategies which increase the health status of crops and minimise the requirement for chemical fungicides. A comprehensive disease assessment was conducted and a range of different sulfur-containing metabolites and enzymes were analysed in relation to sulfur nutrition and fungal diseases. H2S emissions from field-grown crops under different sulfur nutritional status were studied for the first time and a positive relationship was observed. Besides S fertilisation, fungal infection increased H2S emissions, too. The studies deliver new insight into the complex of sulfur-induced resistance but many questions still remain open. This contribution will show different possible strategies to solve some of the open questions.     

Halolysin SptA有助于嗜盐古菌Natrinema sp.J7-2长期生存

【背景】嗜盐古菌可以在盐沉积物中存活长达几百万年,是著名的长寿菌。许多嗜盐古菌分泌胞外蛋白酶,大多数分泌的胞外蛋白酶被称为Halolysin,具有以下特征：属于枯草杆菌蛋白酶类蛋白酶;在胞内折叠后经Tat途径高效分泌至胞外;可自加工形成成熟酶;尤其在天然宿主中大多数Halolysin在对数生长后期表达并在稳定期达到最高水平。目前Halolysin的酶学性质、加工成熟及分泌机制已被广泛研究,然而其生理功能的研究较少。Halolysin SptA是嗜盐古菌Natrinema sp.J7-2的主要胞外蛋白酶,前期研究发现多个顺式调控元件协同调节SptA的生长期依赖性表达,使SptA参与J7-2菌株不同生长期之间的转变,而且在衰亡期之后SptA有助于J7-2菌株继续生存。【目的】研究Halolysin SptA对Natrinema sp.J7-2长期生存的作用。【方法】将J7-2菌株和突变体ΔsptA1分别在寡营养、无外源营养物质（液体）及营养丰富（固体）条件下长期培养,通过比较二者的生长、生存和SptA的表达分泌情况进一步探讨SptA的作用。【结果】J7-2菌株在寡营养条件下产生更多SptA,培养后期（33 d） J7-2菌株活细胞数显著高于ΔsptA1。在无外源营养物质情况下长期温育,J7-2菌株和ΔsptA1经历多次细胞分裂和细胞死亡,在延长温育期间（73—200 d）存活的J7-2菌株细胞数量均显著多于存活的ΔsptA1细胞数量。在营养丰富的固体平板上培养的后期（160 d）,由于营养物质消耗,J7-2菌株通过SptA吸收和利用来源于死细胞蛋白的降解产物,帮助其群体长期生存。【结论】SptA介导的细胞死亡和死细胞蛋白降解,促进J7-2菌株利用来源于死细胞的营养物质,从而有助于菌株群体在营养缺乏条件下长期存活。本研究提供了关于Halolysin生理作用的新见解。     

Life within a community: benefit to yeast long-term survival

Traditionally, living organisms have often been classified into two main categories: unicellular and multicellular. In recent years, however, the boundary between these two groups has become less strict and clear than was previously presumed. Studies on the communities formed by unicellular microorganisms have revealed that various properties and processes so far mainly associated with metazoa are also important for the proper development, survival and behaviour of muticellular microbial populations. In this review, we present various examples of this, using a yeast colony as representative of a structured organized microbial community. Among other things, we will show how the differentiation of yeast cells within a colony can be important for the long-term survival of a community under conditions of nutrient shortage, how colony development and physiology can be influenced by the environment, and how a group of colonies can synchronize their developmental changes. In the last section, we introduce examples of molecular mechanisms that can participate in some aspects of the behaviour of yeast populations.     

Note on the survival of algal resting cells during long-term maintenance in darkness and minimum lake bottom temperature. Comparison of Anabaena (cyanobacteria) and Haematococcus (volvocales)

Resting cell formation in algae and cyanobacteria is one of the strategies developed for withstanding adverse environmental conditions. This note informs about the different capacities of such resting cells to germinate after long-term dark preservation at 4 °C in Anabaena variabilis (Cyanobacteria, Cyanophyta) and Haematococcus lacustris (Chlorophyta, Volvocales).     

Invertebrate Biodiversity in Antarctic Dry Valley Soils and Sediments

We studied invertebrate communities across a transition zone between soils and stream sediments in the cold desert landscape of Taylor Valley, Antarctica. We hypothesized that hydrological and biogeochemical linkages in the functionally important transition zone between streams and surrounding soils should be important in structuring invertebrate communities. We compared invertebrate communities along transects beginning in the saturated sediments under flowing stream water and extending laterally through the hyporheic zone to the dry soils that characterize most of the dry valley landscape. Nematodes, rotifers, and tardigrades assembled into different communities in soils and sediments, but there was no relationship between the total abundance of invertebrates and moisture. Community diversity was, however, influenced by the moisture and salinity gradients created with distance from flowing waters. The wet, low-salinity sediments in the center of the stream contained the most invertebrates and had the highest taxonomic diversity. Adjacent to the stream, communities in the hyporheic zone were influenced strongly by salt deposition. Abundance of invertebrates was low in the hyporheic zone, but this area contained the most co-occurring nematode species (three species). In dry soils, communities were composed almost entirely of a single species of nematode, Scottnema lindsayae, an organism not found in the stream center. These results suggest spatially-partitioned niches for invertebrates in soils and sediments in the dry valley landscape based on proximity to sources of moisture and the interactive effects of salinity. Received 22 September 1998; accepted 16 April 1999.     

Season of birth affects short- and long-term survival

Recent research findings have highlighted the importance of early life conditions as risk factors for adult diseases and therefore determinants of subsequent survival. Given that individuals born during different seasons in seasonal environments experience different early-developmental conditions, an analysis of the effects of the season of birth on survival is considered an effective approach in clarifying the influence of early life conditions on survival in later life. In the present study, we analyzed the long-term effects of early developmental conditions in a historical population in which both nutritional levels and the burden of infectious diseases showed a seasonal variation. Using a semi-computerized linkage process, we were able to match birth and death data for 4,646 individuals born between 1634 and 1870 in the village of Es Mercadal (Minorca Island, Spain). To determine ecological differences associated with the season of birth, we first evaluated the association between season of birth and early life survival. This analysis helped us to determine seasonal variations in early life conditions such as infectious burden and nutritional levels. The season of birth had a significant effect on long-term survival in the birth cohort 1800-1870: summer births had a lower risk of death after age 15. We explain these results in terms of lower susceptibility to degenerative diseases in adult years due to superior in utero nutrition for summer births. These findings support the fetal origin hypothesis which states that the early life environment plays a key role in shaping the subsequent phenotype and risk of adult disease.     

Variation in anhydrobiotic survival of two eutardigrade morphospecies: a story of cryptic species and their dispersal

Studies of geographic variation in anhydrobiotic tolerance may increase our understanding of the population dynamics of terrestrial meiofauna and the relative importance of local adaptation and microhabitat niche separation. Although anhydrobiosis in tardigrades has been studied extensively, few studies have dealt with intraspecific variation in survival and none of these included genetic data to validate the intraspecific nature of the comparisons. Such data are necessary when working with meiofauna as cryptic species are common. We analysed the anhydrobiotic survival and genetic variation in cytochrome oxidase subunit I of two eutardigrades ( Richtersius coronifer and Ramazzottius oberhaeuseri ) from Italy and Sweden to detect possible local adaptation. Survival was analysed as a multidimensional contingency table and showed that anhydrobiotic survival was higher in Sweden for Ra . oberhaeuseri whereas no significant geographic variation was found for Ri. coronifer . Our genetic analysis indicated the coexistence of two cryptic species of Ra . oberhaeuseri in Italy, only one of which was found in Sweden. It could not be determined whether the variation in Ramazzottius is intra- or interspecific due to the presence of these cryptic species. We suggest that geographic variation in anhydrobiotic survival may be a general phenomenon in tardigrades but further research is necessary to determine the degree of intraspecific variation. The genetic analysis showed indications of long-term isolation of the individual populations of Ri. coronifer but recent dispersal in one of the cryptic species of Ramazzottius . We found higher survival in Ra . oberhaeuseri than in Ri. coronifer . These results indicate a possible coupling between anhydrobiotic survival and dispersal rate.     

Local neighborhood effects on long-term survival of individual trees in a neotropical forest

The survival of approximately 235 000 individual tropical trees and saplings in the 50 ha permanent plot on Barro Colorado Island (BCI), Panama was analyzed over a 13-year interval (1982–1995) as a function of four biotic neighborhood variables: (i) total stem density; (ii) conspecific density; (iii) relative plant size; and (iv) relative species richness. These neighborhood variables were measured in annular rings of width 2.5 m, extending 30 m from a given focal plant, and in one more distant annulus at 47.5–50 m. Because survival was spatially autocorrelated, a Gibbs sampler and a Monte Carlo Markov chain method were used for fitting an autologistic regression model to obtain unbiased estimates of parameter variances for hypothesis testing. After pooling all species at the community level, results showed that all four variables had significant and often strong effects on focal plant survival. Three of the four variables had negative effects on focal plant survival; relative plant size was the only variable with a positive effect (18% increase in the survival odds ratio). The variables with a negative effect on the survival odds ratio, in order of their effect strength in the nearest annulus, were: stem density (a 70% reduction in the survival odds ratio), conspecific density (50% reduction) and species richness (13% reduction). A guild-level analysis revealed considerable heterogeneity among guilds in their responses to these variables. For example, survival of gap species showed a much larger positive response to relative plant size than did survival of shade-tolerant species. Survival of shrub species was positively affected by conspecific density, but canopy tree survival was negatively affected. Conspecific density negatively affected survival of rare species much more strongly than survival of common species. The neighborhood effects of conspecific density disappear within approximately 12–15 m of the focal plant. Although locally strong, the rapid spatial decay of these effects raises unanswered questions about their quantitative contribution to the maintenance of tree diversity on landscape scales in the BCI forest.     

Stress during dormancy: effect on recovery rates and life-history traits of anhydrobiotic animals

To test the influence of storage conditions on recovery and life-history traits of dormant animals we subjected cohorts of a bdelloid rotifer (Macrotrachela quadricornifera) and a nematode (Panagrolaimus rigidus) to three different conditions during a 26-d anhydrobiosis period. These conditions were (1) standard conditions in our laboratory (AC), (2) a flight to the U.S.A. and storage there (KSC), and (3) a flight to the U.S.A. followed by a flight on a Shuttle-to-Mir mission (Shuttle). Another cohort (HC) was maintained under hydrated conditions and served as reference for life-history traits of the desiccated samples. The recovery after dormancy and the residual life-history traits of the different cohorts were compared. Results indicate that (a) during dormancy the animals were indifferent to the test conditions, as evidenced from both recovery capacity and life history performances, (b) the anhydrobiotic period affected the experimental species differently. At recovery both animals resumed their life cycle, but while the rotifer appeared indifferent to the time spent in desiccation, the nematode modified its life history according to the duration of anhydrobiosis. Third, (c) induction of anhydrobiosis can act as a switching mechanism for animals capable of desiccation. Anhydrobiosis probably represents a suitable method to preserve organisms during stressful conditions allowing them to return to a normal life when convenient.     

Effects of management for productivity on adult survival of Snowy Plovers

Understanding the factors contributing to variation in demographic parameters and their influences on population growth is fundamental to effective conservation of small populations, but this information is often not available. Among shorebirds, population growth is generally most sensitive to changes in adult survival so understanding the factors affecting this vital rate is important. We used a long-term mark–resight dataset and Program MARK to examine the effect of management actions, initiated to improve nesting productivity, on adult survival in a threatened population of Snowy Plovers (Charadrius nivosus) in Oregon, USA. Apparent adult survival averaged 0.71 ± 0.01 (SE), but increased from 1990 to 2014. This increase coincided with a decline in use of protective nest exclosures, but initiation of lethal nest predator management. The unexpected apparent benefit to adult survival of removal of nest predators and the negative effect of protective nest exclosures highlight the importance of understanding how management practices at one life cycle stage may have unintended consequences at other life stages. Our 25-year analysis adds to our knowledge of an intensively managed, threatened species at the northern limit of its range, but, more importantly, knowledge of the negative effect of exclosure use and the positive effect of predator management on adult survival can help inform conservation of less well-studied species with similar life histories.     

长时程突触可塑性中的突触标识

神经元长时程突触可塑性是学习和记忆的基础,神经元长时程突触可塑性的维持依赖于基因的转录和蛋白质合成.然而,这些转录产物和新合成的蛋白质是如何从胞体运输到突触点,还不甚清楚.近年来的研究显示,当长时程突触可塑性发生时,被激活的突触能通过建立突触标记(synaptic tag)来识别、捕捉和利用其所需要的基因产物,以维持突触可塑性的长时程变化.这一过程或现象被称为突触标识(synaptic tagging).本文就近年来突触标识的研究进展作一概述.     

Desiccation of Panagrolaimus rigidus (Nematoda): survival,reproduction and the influence on the internal clock

Following the life-table experimental schedule, cohorts of aparthenogenetic strain of the free-living nematode Panagrolaimus rigidus were desiccated for six days at theages of4, 8, 12, and 19 d (age effect) and cohorts aged 8 d weredried for15, 20, 40, and 60 days (time effect) to determine theirability torecover and to reproduce.Nematode age had poor effect on recovery after 6 days ofdesiccation until the mean longevity of the nematode (19 daysinhydrated medium) is approached, while increasing times ofdesiccation (from 6 to 60 d) remarkably decreased capacity forrecovery (from 80 to 8%). Anhydrobiosis experienced atdifferentages or for different durations modified the timing of thenematodelife cycle events, but not the pattern of age-specificfecunditynor survival curves. The age-specific fecundity is largelyretainedfollowing anhydrobiosis, but when matched to that of thenematodeskept hydrated (controls), it declines for increasing durationsofdesiccation. Anhydrobiosis appears to cause a reset of theanimalsinternal clock, that is dependent on the duration ofdesiccation.     

Fledgling survival increases with development time and adult survival across north and south temperate zones

Slow life histories are characterized by high adult survival and few offspring, which are thought to allow increased investment per offspring to increase juvenile survival. Consistent with this pattern, south temperate zone birds are commonly longer‐lived and have fewer young than north temperate zone species. However, comparative analyses of juvenile survival, including during the first few weeks of the post‐fledging period when most juvenile mortality occurs, are largely lacking. We combined our measurements of fledgling survival for eight passerines in South Africa with estimates from published studies of 57 north and south temperate zone songbird species to test three predictions: (1) fledgling survival increases with length of development time in the nest; (2) fledgling survival increases with adult survival and reduced brood size controlled for development time; and (3) south temperate zone species, with their higher adult survival and smaller brood sizes, exhibit higher fledgling survival than north temperate zone species controlled for development time. We found that fledgling survival was higher among south temperate zone species and generally increased with development time and adult survival within and between latitudinal regions. Clutch size did not explain additional variation, but was confounded with adult survival. Given the importance of age‐specific mortality to life history evolution, understanding the causes of these geographical patterns of mortality is important.     

长期水淹条件下香根草(Vetiveria zizanioides)、菖蒲(Acorus calamus)和空心莲子草(Alternanthera philoxeroides)的存活及生长响应

人工构建三峡库区消落区植被是控制消落区水土流失、保护消落区生态环境的重要措施,选择能够耐受长时间完全水淹的植物物种是该措施实施的关键.为了验证香根草、菖蒲、空心莲子草能否用于消落区植被的构建,实验模拟消落区的长期完全水淹条件,设置30d、60d、90d、120d、150d和180d等6个完全水淹时间水平,研究了3种植物在完全水淹条件下生长、生物量积累及存活状况.结果发现:(1)3种植物在经受长时间的完全水淹后有较高的存活率,180d全淹处理后,香根草、菖蒲和空心莲子草的存活率分别为87.5%、100%和50%.(2)这3种植物有不同的水下生长能力.全淹条件下,香根草生长缓慢,几乎没有产生新的叶片,总叶长也没有显著变化;菖蒲能够持续产生较对照植株更为细长的叶片,空心莲子草只在水淹初期(30d内)能够快速伸长地上部分的枝条,并迅速产生新叶片,但随水淹时间的延长,总枝条长及总叶片数没有再显著增加.(3)与对照植株相比,全淹处理抑制了3种植物总生物量的增加,但对3种植物的地上、地下部分生物量抑制程度不同.全淹条件下,香根草的地上部分和地下部分生物量与水淹0d水平(水淹处理开始前一天,下同)相比无显著变化,根冠比高于对照植株;菖蒲的地上部分生物量随水淹时间延长而降低,但却高于对照植株,地下部分生物量始终低于水淹0d水平,根冠比低于对照植株;空心莲子草的地上部分生物量与水淹0d水平相比无显著差异,但地下部分生物量与水淹0d水平相比大幅降低,根冠比低于对照植株.结果表明,这3种植物都有很强的水淹耐受能力,可应用于三峡库区消落区植被的构建.同时,发现植物对长期完全水淹的耐受能力很大程度上与植株在水下的生长情况及植株的营养储备水平相关,剧烈的水下生长会消耗大量的营养储备,进而造成植株存活率降低.植株在全淹条件下有限的生长能力及丰富的营养储备可能是耐淹物种的重要特征.     

Rationality and politics in long-term decisions

A central question in the conservation and exploitation of nature is the time perspective used in decisions. According to the standard economic theory, decision makers tend to favour immediate benefits at the expense of more distant ones. In this essay, different economic and philosophical arguments for and against this practice are discussed. The conclusion is that although long-term decisions are qualitatively different from normal decisions, the difference cannot be represented in terms of a uniform discount rate. The latter part of the essay discusses the question of how societies can be made less myopic. As we need constitutional restrictions to protect minorities, we may also need similar restrictions to protect the interests of future generations.