Measurement of porosity in very small samples of plant tissue

The relative volume of internal gas spaces (i.e., porosity) of the shoot and roots of a plant largely determines its resistance to flooding, as oxygen may diffuse through these cavities from non-flooded parts of the plant into the submerged tissues. The current techniques to measure porosity either need relatively large amounts of plant tissue (200 mg per sample), or are time-consuming and not sufficiently accurate for specific types of plant material. These limitations were the reason to develop a new method of porosity measurement. Small segments of roots were taken from freshly harvested plants, placed in a two-piece hard gelatin capsule and weighed on a microbalance. The root segments were subsequently infiltrated with water under vacuum, blotted carefully and weighed again. Using the increase in weight and the specific weight of infiltrated tissue, derived from a larger sample of roots, it was possible to calculate the porosity of individual root segments as small as 3–5 mg with a length of 5 mm. The new method combines this use of small samples with a high accuracy, and proved useful for a variety of plant species. Porosity data obtained with this method will improve our knowledge of small-scale processes such as aerenchyma development in root tips.     

Measurement of protein by dye-binding assay in the presence of metrizamide

Quantitative determination of protein using the binding of Coomassie Brilliant Blue G-250 was investigated with respect to interference with the density gradient material metrizamide, and compared with the corresponding interference using the Lowry method. The background absorption obtained with metrizamide in the absence of protein was less than 10% of that obtained with the Lowry method. In the presence of 0–4% metrizamide, parallel standard curves were obtained with 0–67 μg of protein in the samples. The curves overlapped in the range 0–40 μg of protein when metrizamide was included in the blanks. With up to 2% final concentration of metrizamide in the assay, the curves overlapped at all protein concentrations tested (0–67 μg). Correction for metrizamide interference is thus a simple procedure and a precise estimation of the metrizamide concentration is less critical than when the Lowry assay is used. The method is well suited for quantitation of protein in samples collected from metrizamide grandients.     

Measurement of low molecular weight tannins: Indicators of methanogenic toxic tannins

The effectiveness of several low molecular weight (MW) tannin measurement methods for indicating the tannin toxicity to methan bacteria was evaluated. The methanogenic toxicity of the low and high MW tannins from autoxidized bark extracts was studied by selective removal of MW fractions from the extract with active carbon adsorption and calcium precipitation treatments. The toxicity of the low MW tannin fraction and the nontoxicity of the high MW tannin fraction were demonstrated. The low MW tannin concentration, measured by HPLC and a method based on the loss of tannins by treatment with granular active carbon (AC), had a very close relationship with the methanogenic toxicity, but a poor relationship was found with the total tannin concentration. The low MW tannins detected by the HPLC and AC methods had similar peak area positions in HPLC chromatograms as the tannins that were adsorbed by polyamide (trisacryl GF05) gel beads. These gel beads have an exclusion limit of 3000 g·mol⁻¹, indicating that this is the approximate MW boundary between toxic and non-toxic tannins.     

从茶树种胚中提取总RNA方法的研究

茶树种胚中富含多糖和多酚类化合物,这增加了总RNA的提取难度.试验以茶树种胚为研究对象,通过对几种提取总RNA方法的比较与分析,认为用改进的CTAB-LjCl法提取茶树种胚总RNA的产率较高,质量好,可直接用于cDNA的合成、cDNA-AFLP分析等分子生物学实验操作.     

Kinetics of protein agglomeration. A nephelometric method for the determination of total protein in biological samples

The kinetics of agglomeration of proteins precipitating in a viscous solution was measured by light scattering. The resulting transitory maximum was linearly proportional to the mass of protein over three orders of magnitude. The change in scattering intensity is described as a change in scattering symmetry due to a continuous in particle size.This method is both fast (minutes) and sensitive (30 ng protein) and is independent of the chemical composition of the different protein species and is barely influenced by size and shape of the proteins.By solubilising the protein in an alkaline dedecyl sulfate solution this method can be applied to all types of biological samples (e.g. tissue homogenates proteins) and also to all types of biological preparations containing detergents as well as urea, sucrose, salts and lipids.     

A ninhydrin-based assay to quantitate the total protein content of tissue samples

Quantitation of small tissue samples for total protein content is essential for many biochemical analyses. In this study a ninhydrin method for measuring the total protein content of tissue hydrolysates is presented.The ninhydrin reagent is stable at room temperature for up to 1 month in the ethylene glycol-sodium acetate solvent system without the requirement for a nitrogen atmosphere. The reaction was very accurate and precise, with intra- and interassay variations of less than 3% when 5 microg of protein was assayed. All proteins that were investigated contributed the same color intensity per microgram protein as bovine serum albumin. This assay was several times more sensitive than the Coomassie reaction and linear over a greater range of protein concentration.     

Extraction of condensed tannins from Mexican plant sources

Contents of total polyphenols, condensed tannins and proanthocyanidins, and their stability to various pH values and temperatures were studied in Mexican blueberry, cuautecomate fruit, garambullo fruit, aubergine, coffee pulp and residues of black grapes. Several aqueous extracts, obtained through a one-pass-extraction process, were analyzed using liquid chromatography in order to quantify the condensed tannin (proanthocyanidin) content responsible for their antioxidant activity and colour. All tested samples included high proanthocyanidin contents demonstrating that these Mexican fruits and vegetables are good sources of natural antioxidants, and they all could be considered as excellent functional foods due to their bioactivity measured as the condensed tannin level.     

Evidence for the presence of proteinase inhibitor I in vacuolar protein bodies of plant cells

Summary Protein bodies induced in tomato leaf cells by wounding were shown to contain proteinase Inhibitor I by using ferritin-labelled antibodies, fluorescein-labelled antibodies, and cytochrome C-labelled antibody fragments. Both pre-embedding and postembedding techniques were used. Nonspecific binding was least when p-formaldehyde was used as the initial fixative followed by treatment with cytochrome c-labelled antibody fragments.Abbreviations Fab antibody fragments - BSA bovine serum albumin - GMA glycol methacrylate - THB Tris-HCl buffer Taken in part from a doctoral (Ph.D.) dissertation submitted to Washington State University by Vivian V. Yang. This work was supported largely by NSF Grant GB-29614X (LKS) and in part by the United States Department of Agricultural Cooperative States Research Service Grant 316-15-30 (CAR), the National Science Foundation Grant GB-37972 (CAR), and the College of Agriculture Research Center, Washington State University, Pullman, WA 99163, Scientific Paper No. 4525, Project 1791.Program in Genetics and Department of Botany. To whom reprint requests should be sent.Department of Agricultural Chemistry and Program in Biochemistry and Biophysics.     

Measurement of the synthesis rates of collagens and total protein in rabbit muscle.

1. Collagen- and total-protein-synthesis rates were determined in rabbit muscle by continuous infusion of radioactive proline. 2. The precursor pool of free proline used for collagen synthesis was defined by measuring the specific radioactivity of hydroxy-proline in isolated type I procollagen. The specific radioactivities of type I procollagen were about 40% of those for free proline in the homogenate. 3. The mean ratio (+/- S.E.M.) between the fractional synthesis rates of muscle collagen and total protein was 0.99 +/- 0.10, where the total protein values were based on specific radioactivities of the homogenate free proline pools. 4. Types I, III and V collagen were solubilized by pepsin and isolated by fractional precipitation with NaCl. The fractional synthesis rates of types I and III collagens were very similar. Type V collagen samples had higher specific radioactivities than the other collagens, but this was not necessarily indicative of a higher rate of synthesis because of uncertainty about the cellular origin of this collagen and, hence, the specific radioactivity of its precursor proline pool.     

拳参中没食子酸和总鞣质的含量测定

该研究采用高效液相色谱法和紫外分光光度法分别对拳参中的主要成份———没食子酸以及总鞣质进行含量测定。其中,用高效液相色谱法测定没食子酸的含量,HPLC 条件为 Hypersil GOLD Phenyl 柱(250 mm ×4.6 mm,5μm),甲醇－0.1％磷酸梯度洗脱,流速为1.0 mL?min-1,检测波长为276 nm。用紫外分光光度法测定总鞣质的含量,采用2010版《中国药典》一部附录 XB 中鞣质含量测定方法,用干酪素沉淀鞣质,通过干酪素沉淀前后鞣质的变化来确定样品中总鞣质的含量。结果表明：没食子酸在0.051~1.02μg 范围内呈现良好的线性关系,平均加样回收率分别为99.1％、100.3％、101.9％,RSD 分别为2.1％、0.8％、2.0％;总鞣质在2.09~10.48μg 范围内呈现良好线性关系,平均加样回收率分别为102.2％、100.2％、102.1％,RSD 分别为1.3％、1.4％、1.0％。利用上述方法,还测定了贵州贵阳和四川成都各3批样品中没食子酸和总鞣质的含量差异,发现成都样品中的没食子酸与总鞣质均大于贵阳拳参中的含量,初步分析导致这一结果的原因可能与拳参的生长海拔有关,而成都的海拔范围更适合拳参的生长。上述两种方法快速、简单、重现性好,可以作为拳参中没食子酸和总鞣质的含量测定方法,而该方法也是首次被用来同时测定拳参中没食子酸和总鞣质的含量,为今后的地方药典标准甚至《中国药典》标准的补充和完善提供了重要依据。     

Correlation of oxidative transformations of hydrolyzable tannins and plant evolution

The progressive oxidative transformations in the biogenesis of hydrolyzable tannins, gallotannin (I) --> ellagitannin (II) --> dehydro ellagitannin (III) --> transformed dehydroellagitannin (IV), conform in several aspects to the evolutionary routes in the subclasses of Dicotyledonae, particularly in the Rosidae.     

Determination of total protein in hyperimmune serum samples by near-infrared spectrometry and multivariate calibration

In the present work, the determination of the total protein concentration in hyperimmune serum samples was performed through a partial least-squares near-infrared (NIR-PLS) method. The method was based on the chemometric treatment of the NIR spectra of samples. The influences of spectra preprocessing and spectral window utilized in the construction of PLS model were studied. Models were built using reference data of 19 samples selected through the use of hierarchical cluster analysis (HCA) of NIR spectra of samples and another 24 samples were employed for external validation of the method. A model with better prediction capacity was obtained after whole spectra preprocessing by multiplicative scattering correction (MSC) algorithm and using data in the spectral range of 2158-2209 nm. Under optimized conditions a RMSEP of 0.21 g dl⁻¹ and a quality coefficient value (QC) of only 5.8% were obtained for the prediction of total protein content in the samples used for external validation. Also, a determination coefficient, r², of 0.97 was obtained in the correlation of predicted and reference data of samples situated in the validation set.     

Effects of storage conditions on total carbon and nitrogen contents of soil and plant samples

Aims The storage of soil and plant samples has important significance for ecological studies, but has not been widely used. This study aims to compare total carbon/nitrogen content of soil and plant samples before and after long term storage, and further to investigate the feasibility of archiving samples for time series ecological studies at large temporal scales.Methods Soil and plant samples were collected in the growing season in 2011. Carbon/nitrogen mass fraction were analyzed after four years of storage, and were compared with the data obtained before storage using pairwise t-test and linear regression.Important findings Nitrogen mass fractions of stored samples were linearly correlated to the data before storage along the 1:1 line under different storage conditions, and the correlation coefficient r was greater than 0.98 (except for soil samples stored at temperature lower than 20 °C and with particle size <2 mm, r = 0.91). The carbon mass fraction after storage was changed by the storage conditions. Carbon mass fractions of stored samples with particle size <0.15 mm were linearly correlated to the data before storage along the 1:1 line (r > 0.98). Carbon mass fractions of samples with particle size <2 mm increased after storage, and the slope of the linear relationship was 1.26 and 1.04 for soil and plant samples respectively. These results indicated that, nitrogen content of stored samples was stable under different storage conditions, while the stability of carbon content was affected by sample particle size but by storage temperature. Archived samples used for carbon/nitrogen analysis were suggested to be ground to particle size <0.15 mm under fully dry and completely sealed conditions.     

Inferring coancestry in population samples in the presence of linkage disequilibrium

In both pedigree linkage studies and in population-based association studies there has been much interest in the use of modern dense genetic marker data to infer segments of gene identity by descent (ibd) among individuals not known to be related, to increase power and resolution in localizing genes affecting complex traits. In this article, we present a hidden Markov model (HMM) for ibd among a set of chromosomes and describe methods and software for inference of ibd among the four chromosomes of pairs of individuals, using either phased (haplotypic) or unphased (genotypic) data. The model allows for missing data and typing error, but does not model linkage disequilibrium (LD), because fitting an accurate LD model requires large samples from well-studied populations. However, LD remains a major confounding factor, since LD is itself a reflection of coancestry at the population level. To study the impact of LD, we have developed a novel simulation approach to generate realistic dense marker data for the same set of markers but at varying levels of LD. Using this approach, we present results of a study of the impact of LD on the sensitivity and specificity of our HMM model in estimating segments of ibd among sets of four chromosomes and between genotype pairs. We show that, despite not incorporating LD, our model has been quite successful in detecting segments as small as 10(6) bp (1 Mpb); we present also comparisons with fastIBD which uses an LD model in estimating ibd.     

Variation in total phenols and condensed tannins in Eucalyptus: leaf phenology and insect grazing

Total phenols and condensed tannins in leaves of seven species of Eucalyptus ranged from 4–40% and 0–27% respectively of the leaf dry weight. The concentrations of these compounds were variable but usually high in young and older leaves throughout the growing season, and typically increased during winter, but no other trends with season or leafage were apparent. This pattern of seasonal variation in concentrations of total phenols and condensed tannins is different to that studied for other plant species. This difference may be related to repeated production of new leaves by Eucalyptus during the growing season, and the probability that these leaves will be attacked by herbivorous insects.     

The digestion of dietary protein bound by condensed tannins in the gastro-intestinal tract of sheep

The digestion of dietary protein bound by condensed tannins (CTs) in ruminants was investigated by determining the extent of dissociation of insoluble ¹²⁵I-BSA + CT complexes administered to abomasally and intestinally fistulated sheep. The extent of dissociation was registered as the true digestibility of iodinated bovine serum albumin (¹²⁵I-BSA). The true digestibility of ¹²⁵I-BSA originally bound to Leucaena pallida CT (0.721) was lower (P<0.05) than that of ¹²⁵I-BSA originally bound to L. leucocephala CT (0.880) between the abomasum and terminal ileum. These results indicate that differences in the ability of CT to inhibit ¹²⁵I-BSA digestion in vivo matched the relative abilities of the same CT to bind BSA in vitro, indicating that the in vitro BSA-binding assay for ranking CT behaviour was biologically relevant in vivo. Furthermore, the true digestibility of CT-bound ¹²⁵I-BSA between the mouth and faeces permitted the prediction of the quantitative contribution that CT-bound dietary proteins make to improved nitrogen supply to the small intestines.     

The presence and activity of progesterone in the plant kingdom

Steroids are present in living organisms as one of the most essential groups of compounds. Continuous research has led to new discoveries and the revision of existing information concerning the occurrence and the role of steroids, both in animals and plants. This article will focus on reviewing the literature studying progesterone in the plant kingdom, including its discovery, its occurrence in different plant species as well as its biological activity and molecular basis of action. This review will present and discuss the current data in addition to introducing potential directions for further research on the subject of progesterone in plants.     

Evidence for the presence of ferritin in plant mitochondria.

In this work, evidence for the presence of ferritins in plant mitochondria is supplied. Mitochondria were isolated from etiolated pea stems and Arabidopsis thaliana cell cultures. The proteins were separated by SDS/PAGE. A protein, with an apparent molecular mass of approximately 25-26 kDa (corresponding to that of ferritin), was cross-reacted with an antibody raised against pea seed ferritin. The mitochondrial ferritin from pea stems was also purified by immunoprecipitation. The purified protein was analyzed by MALDI-TOF mass spectrometry and the results of both mass finger print and peptide fragmentation by post source decay assign the polypeptide sequence to the pea ferritin (P < 0.05). The mitochondrial localization of ferritin was also confirmed by immunocytochemistry experiments on isolated mitochondria and cross-sections of pea stem cells. The possible role of ferritin in oxidative stress of plant mitochondria is discussed.