Relations between suspended bacteria, epiphytic bacteria and submerged vegetation over the spring growing season in a calcareous headstream

SUMMARY. 1. Quantitative observations on suspended bacteria, epiphytic bacteria and submerged vegetation, in a calcareous headstream in North Humberside, were made at regular intervals from January to June 1984.
2. Downstream increase in concentration of suspended bacteria was observed along a 135 m richly-vegetated section but not over a 150 m vegetation-free section, hence there was measurable drift loss of bacteria only from within the vegetated section.
3. The total number of epiphytic bacteria within the vegetated section was estimated from the density of epiphytic bacteria per unit dry weight of submerged vegetation and the total dry weight of submerged vegetation.
4. The total number of epiphytic baeteria within the vegetated section decreased frtim 2.5 × 10¹⁵ in January to 0.8 × l0¹⁵ March before increasing to 4.7 × 10¹⁵ by June. This pattern was related to deerease and subsequent increase in density of epiphytic bacteria per unit dry weight of vegetation. The total dry weight of submerged vegetation inereased throughout the study period.
5. The daily drift loss of bacteria from the vegetated section averaged 53% (range 9–132%) of the total epiphytic bacteria, a loss rate which might reasonably be supported by the epiphyte population.
6. The dimensions and volume of suspended bacteria increased, between the source and the downstream limit of the vegetated section, to resemble those of epiphytic bacteria.
7. The results suggested that released epiphytic bacteria might largely be the source of suspended bacteria in this headstream.     

The relationships among three habitat scales and stream benthic invertebrate community structure

1. The relationships between three habitat scales and lotic invertebrate species composition were investigated for the 15 540 km² Yakima River basin in south-central Washington, U.S.A.
2. The three spatial scales were sample (the sampled riffle), reach (a length of ten–twenty stream widths) and segment (a length of stream of nearly uniform slope and valley form having no change in stream order).
3. Physical variables were highly correlated between scales and expressed a relationship between altitude, basin form and small-scale physical structure.
4. Multiple discriminant function analyses indicated that segment- and reach-scale variables discriminated among species-defined groups better than sample-scale variables.
5. Species composition varied along a complex altitudinal gradient of changing basin form and resultant land use.
6. There was no clear relationship between species richness and altitude on a site basis. However, when viewed at the basin scale, maximum richness was observed at the transition between montane and valley sites.     

Stable isotope analysis of macroinvertebrates and their food sources in a glacier stream

1. Food sources and trophic structure of the macroinvertebrate community along a longitudinal gradient were examined in a glacier stream of the Swiss Alps (Val Roseg). Analysis of multiple stable isotopes (δ¹³C and δ¹⁵N) and measurement of C : N ratios were used to differentiate between allochthonous and autochthonous organic matter.
2. Although isotopic signatures of algae varied widely among sites and dates, it was possible to discriminate between allochthonous and autochthonous food sources using a site-specific approach.
3. Dominant food sources of herbivorous invertebrates in all main channel sites were epilithic diatoms and the filamentous gold alga Hydrurus foetidus . Allochthonous organic matter was of some importance only in a groundwater-fed stream close to the floodplain margin.
4. Seasonal changes in the δ¹³C signature of the macroinvertebrates corresponded with seasonal changes in δ¹³C of the gold alga H. foetidus . This indicated that the energy base remains autochthonous throughout the year.
5. Because of limited food sources, feeding plasticity of the invertebrate community was high. Both grazers and shredders fed predominantly on algae, whereas gatherer-collectors seemed to be omnivorous.
6. The overall enrichment of δ¹⁵N was 2.25‰ ( r ²=0.99) per trophic level. On a gradient from the glacier site to a downstream forested site trophic enrichment was constant but variation in δ¹⁵N within trophic levels decreased.     

The relationships among three habitat scales and stream benthic invertebrate community structure

1. The relationships between three habitat scales and lotic invertebrate species composition were investigated for the 15 540 km² Yakima River basin in south-central Washington, U.S.A.
2. The three spatial scales were sample (the sampled riffle), reach (a length of ten–twenty stream widths) and segment (a length of stream of nearly uniform slope and valley form having no change in stream order).
3. Physical variables were highly correlated between scales and expressed a relationship between altitude, basin form and small-scale physical structure.
4. Multiple discriminant function analyses indicated that segment- and reach-scale variables discriminated among species-defined groups better than sample-scale variables.
5. Species composition varied along a complex altitudinal gradient of changing basin form and resultant land use.
6. There was no clear relationship between species richness and altitude on a site basis. However, when viewed at the basin scale, maximum richness was observed at the transition between montane and valley sites.     

Isolation and characterization of bacteriophages for avian pathogenic E. coli strains

Aims:  To isolate and characterize bacteriophages, and to evaluate its lytic performance against avian pathogenic Escherichia coli (APEC) strains with high patterns of antibiotic resistance, in order to select phages for a therapeutic product to treat colibacillosis in chickens.
Methods and Results:  Bacteriophages were isolated from poultry sewage and tested against 148 O-serotyped APEC strains. The morphological characterization of the bacteriophages was made by transmission electronic microscopy (TEM) observations and the genetic comparison between bacteriophages DNA was performed by restriction fragment length polymorphism (RFLP) patterns. Results showed that 70·5% of the tested E. coli strains were sensitive to a combination of three of the five isolated phages, that seemed to be virulent and taxonomically belong to the Caudovirales order. Two of them look like 16–19, T4-like phages ( Myoviridae ) and the third is a T1-like phage and belongs to Syphoviridae family. All of them are genetically different.
Conclusions:  It was possible to obtain a combination of three different lytic bacteriophages with broad lytic spectra against the most prevalent O-serotypes of APEC.
Significance and Impact of the Study:  Data reported in this study, presents an in vitro well studied phage product to be used as antimicrobial agent to treat colibacillosis in poultry industry.     

Recombination between Is5 Elements: Requirement for Homology and Recombination Functions

Intermolecular recombination between two IS5 elements was measured, using bacteriophage lambda recombination vectors, and was compared to recombination between two copies of an SV40 segment cloned into the same vectors. Experiments were conducted in the presence and in the absence of RecA and Red functions, and with the recombining inserts in the same or in reversed orientation. Under all conditions, IS5 elements recombined in a manner similar to the SV40 inserts, indicating that IS-encoded functions did not confer measurable additional intermolecular recombination ability to IS5 in E. coli K-12. Bacteriophages containing reversed IS5 inserts, for which the 16 base pair (bp) termini are identical in 15 positions and which display 12 bp of uninterrupted homology, recombined at approximately the same low frequency under Rec+ and Rec- conditions, indicating that these short homologies were not good substrates for the Rec system. Bacteriophages having reversed inserts recombined better under Red+ than under Red- conditions, but the crossovers were located in nonhomologous regions flanking the element termini. This suggests that 12-bp homologies are not good substrates for the Red system.     

Isolation of bovine intestinal Lactobacillus plantarum and Pediococcus acidilactici with inhibitory activity against Escherichia coli O157 and F5

Aims:  The growth rate of bovine lactic acid bacteria (LAB) in five different culture conditions, and their inhibitory activity against Escherichia coli O157 and F5 in two assays was assessed to identify LAB for potential prophylactic use in cattle.
Methods and Results:  106 bovine-derived faecal/intestinal LAB were tested in vitro for tolerance to pH 2·0, pH 4·0, 0·15% and 0·3% bile, aerobic incubation, and for inhibitory activity against E. coli O157 ( n  = 3) and F5 ( n  = 1). While no LAB grew at pH 2·0, LAB survivability varied between 35% and 100% on the other tests. Exactly 7·6% (8/106) of LAB supernatants inhibited the growth of E. coli in two assays, whereas 6·6% (7/106) of isolates enhanced the growth of all E. coli strains. Partial 16s rRNA gene sequencing of six best isolates (95th percentile) revealed that five were Lactobacillus plantarum and one Pediococcus acidilactici.
Conclusion:  Lactobacillus plantarum with acid/bile and aerobic resistance and inhibitory activity against E. coli O157 and F5 inhabit the intestinal tract of healthy cattle. Some LAB may enhance E. coli growth.
Significance and Impact of the Study:  Lactobacillus plantarum and P. acidilactici are natural plant micro-organisms and studied silage inoculants. Their identification from gastrointestinal samples of healthy cattle is prophylactically promising.     

The influence of the rate of temperature change on the activation of dormant seeds of Rumex obtusifolius L.

1. One temperature shift from 20 to 30°C in darkness induces 30–40% germination in Rumex obtusifolius seeds. The same germination percentages are found with heat treatment varying between 1 and 6h duration, indicating that the total heat sum of the temperature shift is not important.
2. Germination is greatly enhanced by three consecutive heat shifts of 1h at 30°C separated by 1h periods at 20°C.
3. The seeds are activated to a small extent after a slow warming (+2°Ch^–1) from 20 to 30°C, followed by incubation for 1h at 30°C. Germination is much higher after rapid heating (+10°Ch^–1) to 30°C, followed by 1h incubation at this temperature. Repeated fast heating treatments on four consecutive days enhances germination. Moderately rapid heatings (+3·3°Ch^–1) give intermediate results.
4. The rate of cooling does not influence the germination percentage. Cooling alone cannot induce germination.
5. Heating alone from 15 to 25°C without cooling also activates germination. In this temperature range the seeds are more activated by rapid warming than by slow warming.
6. The ecological relevance of the response to different warming rate is discussed. The insensitivity of seeds to a slow warming might keep deeply buried seeds in a dormant stage.     

Comparative nesting and feeding ecology of skylarks Alauda arvensis on arable farmland in southern England with special reference to set-aside

1. A study of skylark Alauda arvensis L. breeding ecology in relation to crop type was carried out from April to August 1992 on arable land in southern England. Set-aside land was included in this comparative study.
2. Territory density averaged 0·15 ha⁻¹. It was 2–3 times higher in fields of set-aside and grass, especially permanent pasture, than in winter and spring-sown cereals.
3. Territory size was nearly twice as large in fields of winter cereals (4·5 ha) than in other crop types (2·5 ha). Where set-aside was present on one farm, territory size in set-aside (1·7 ha) was a third lower than in cereals and grass.
4. Nesting began in set-aside and permanent pasture in April and peaked in late May. Nesting was not detected in spring barley until late May and in silage grass until early June. The density of successful nests in set-aside fields was more than double that in any of the arable crop types.
5. Average clutch size at hatching was 3·91 eggs in fields of set-aside, over 15% higher than in silage grass (3·40) and in spring barley (3·27).
6. Fledging success did not differ according to crop type, but productivity, expressed as the number of fledglings produced per hectare, was 0·50 in set-aside, 0·13 in silage grass, and 0·21 in spring barley. Nests with chicks were not found in fields of winter cereals. The causes of chick death were thought to be predation in set-aside fields, farming practices in silage grass fields, and suspected starvation in spring cereals.
7. The potentially high nesting success of skylarks in set-aside implies that sympathetic set-aside management could play an important part in reversing its decline across the European Union.     

A reconsideration of the evidence for Escherichia coli STa (heat stable) enterotoxin-driven fluid secretion: a new view of STa action and a new paradigm for fluid absorption

1. Summary, 7
2. Introduction, 8
3. Existing model of net fluid transport, 8
4. A new model for net fluid absorption, 10
5. Evidence for the new model for net fluid absorption, 12
5.1 Evidence from altering ambient carbon dioxide levels, 13
5.2 The role of carbonic anhydrase in net fluid absorption, 14
5.3 Evidence from perfusion with antibiotics, 14
5.4 Evidence from chronic animal models of diarrhoeal disease and resection studies, 14
5.5 Evidence from oral rehydration solution studies, 15
5.6 Evidence from numerical calculations, 16
5.7 Evidence from gene product deletion studies, 17
6. Lack of evidence for the present model of Sta-driven intestinal secretion, 17
6.1 Changes in short circuit current in Ussing chamber studies, 17
6.2 Evidence from T 84 cell studies, 17
6.3 Proxy in vivo systems, 18
6.4 Short duration perfused in vivo loops, 18
6.5 Notional bicarbonate secretion in vivo and in vitro , 19
7. Reconciliation of the new model for fluid absorption with STa action, 21
7.1 Experimentally based evidence, 21
7.2 Clinical evidence from enzyme deletion, 22
8. Acknowledgements, 23
9. References, 23     

Growth responses of 15 rain-forest tree species to a light gradient: the relative importance of morphological and physiological traits

1. Growth of seedlings of 15 rain-forest tree species was compared under controlled conditions, at six different light levels (3, 6, 12, 25, 50 and 100% daylight).
2. Most plant variables showed strong ontogenetic changes; they were highly dependent on the biomass of the plant.
3. Growth rate was highest at intermediate light levels (25–50%) above which it declined. Most plant variables showed a curvilinear response to irradiance, with the largest changes at the lowest light levels.
4. There was a consistent ranking in growth between species; species that were fast growing in a low-light environment were also fast growing in a high-light environment.
5. At low light, interspecific variation in relative growth rate was determined mainly by differences in a morphological trait, the leaf area ratio (LAR), whereas at high light it was determined mainly by differences in a physiological trait, the net assimilation rate (NAR).
6. NAR became a stronger determinant of growth than LAR in more than 10–15% daylight. As light availability in the forest is generally much lower than this threshold level, it follows that interspecific variation in growth in a forest environment is mainly owing to variation in morphology.     

The ectoparasitization of Coleophora alticolella (Lepidoptera) in relation to its aititudinal distribution

Abstract. 1. The parasitization of the larvae of Coleophora alticolella . feeding on Juncus squarrosus , was investigated at a series of altitudes from 15 to 520m above sea-level in northern England during 1977 and 1978.
2. Six species of primary parasitoid and one hyperparasitoid were reared from this host. Five of the primary parasitoids were ectophagous; only two specimens of the endoparasitoid, Gonotypus melanostoma , were reared.
3. All of the parasitoid species were recorded at 15 m but fewer at sites of higher altitude. Only one species, Scambus brevicomis , was recorded above 305 m, and none above 395 m. The hyperparasitoid, Tetrastichus endemus, was present only at 15 m.
4. Percentage parasitization was highest at 15 m; it was reduced from 51% to only 2% between 215 and 305 m in 1978. There was an increase in host density over this altitudinal range.
5. Three species, Scambus brevicomis. Elachertus olivaceus and Euderus viridis , accounted for most of the parasitization, but their relative proportions vaned at different altitudes.
6. The sex-ratios of the parasitoids reared from Coleophora alticolella ranged from 3.2% females for Scambus brevicomis , which is considered to also use larger hosts, to 99.4% females for Elachertus olivaceus , which develops by thelytokous parthenogenesis.
7. Euderus viridis and Scambus brevicomis started to attack the Coleophora alticolella larvae at a later date at 245 m than at 15 m, but attack by Elachertus olivacats was not delayed at the higher site.     

Population dynamics and production of Sialis lutaria L. (Megaloptera) in the Danish River Suså

SUMMARY. 1. Populations of Stalls lutaria L. were sampled quantitatively at about monthly intervals during 3 years at two localities in the macrophyte rich River Suså, Denmark.
2. The life cycle was univoltine. The larvae hatched in June-July, and the initial S. lutaria population densities varied between 10 and 370 ind. m⁻². These differences were probably due to extreme variations in stream discharge during the period of recruitment, high velocities preventing the small swimming larvae from reaching the sediment.
3. The S. lutaria rate of elimination varied between 0.11 and 1.47% d⁻¹at the two localities. The high rate of elimination was possibly due to fish predation.
4. The growth rates varied between 0.54 and 15% d⁻¹. Growth rates differed between localities and years.
5. Numbers of potential prey organisms were not higher in sample units with S. lutaria than in sample units without S. lutaria . Numbers of leeches, which were potential competitors, did not differ significantly in sample units with and without S. lutaria .
6. Production of S. lutaria varied between 0.16 and 2.49 g ash free dry weight m⁻² y⁻¹, and the P/ ratios varied between 3.0 and 7.3 y⁻¹. The P/ ratios increased significantly with increasing rate of elimination.     

Antimicrobial and antistaphylococcal biofilm activity from the sea urchin Paracentrotus lividus

Aims:  Staphylococcal biofilm-associated infections are resistant to conventional antibiotics. Consequently, new agents are needed to treat them. With this aim, we focused on the effector cells (coelomocytes) of the sea urchin Paracentrotus lividus immune system.
Methods and Results:  We tested the activity of the 5-kDa peptide fraction of the cytosol from coelomocytes (5-CC) against a group of Gram-positive, Gram-negative bacteria and fungi. We determined minimal inhibitory concentrations (MICs) ranging from 253·7 to 15·8 mg ml⁻¹. We observed an inhibitory activity and antibiofilm properties of 5-CC against staphylococcal biofilms of reference strains Staphylococcus epidermidis DSM 3269 and Staphylococcus aureus ATCC 29213. The antimicrobial efficacy of 5-CC against the biofilms of clinical strain Staph. epidermidis 1457 was also tested using live/dead staining in combination with confocal laser scanning microscopy. At a sub-MIC concentration (31·7 mg ml⁻¹) of 5-CC the formation of young (6-h old) and mature (24-h old) staphylococcal biofilms was inhibited.
Conclusions:  The biological activity of 5-CC could be attributed to three peptides belonging to the sequence segment 9–41 of a beta-thymosin of P. lividus .
Significance and Impact of the Study:  The effector cells of P. lividus represent an interesting source of marine invertebrates-derived antimicrobial agents in the development of new strategies to treat staphylococcal biofilms.     

Antimicrobial resistance and in vitro gene transfer in bacteria isolated from the ulcers of EUS-affected fish in India

Aims:  The occurrence of drug resistance and plasmid-mediated transferability was investigated in 15 Aeromonas isolates collected from the ulcers of epizootic ulcerative syndrome (EUS)-affected fishes Katla ( Catla catla ), Mrigel ( Cirrhinus mrigala ) and Punti ( Puntius sp.).
Methods and Results:  Disc diffusion assay showed that all the strains were resistant to ampicillin and sensitive to streptomycin. Of the 15 isolates examined, 93·3% isolates were resistant to erythromycin, sulfadiazine and novobiocin, while 66% were resistant to rifampin and 20% to chloramphenicol. All isolates harboured plasmids with sizes ranging from 64 to 23 kbp with a 23-kbp plasmid in common. Plasmids from 11 Aeromonas strains were transferred to Escherichia coli DH5α recipient strain along with the transfer of ampicillin, erythromycin and chloramphenicol resistance determinants with frequencies ranging from 7·0 × 10⁻⁶ to 1·8 × 10⁻⁵ transconjugants per recipient cell.
Conclusions:  The resistance to ampicillin, erythromycin, sulfadiazine, novobiocin and chloramphenicol is prevalent among the bacteria isolated from EUS-affected fish, and resistant determinants of some of these antibiotics have been transferred to the bacteria of other origin.
Significance and Impact of the Study:  The emergence of antibiotic resistance bacteria and gene transfer in vitr o suggests that antibiotics should be used more cautiously to treat Aeromonas infections in aquaculture.     

Vertical distribution and abundance of invertebrates within the sandy substrate of a low-gradient headwater stream

SUMMARY. 1 The vertical distribution of invertebrates (>0.053 mm) was studied in a sandy-bottomed, first-order stream on the Coastal Plain of Virginia, U.S.A. Invertebrate species composition, abundance and bio-mass were determined monthly over one year at sediment depth intervals of 0–1, 1–5, 5–15,15–30 and 30–40 cm.
2. The subsurface community was numerically dominated by species of Chironomidae, Nematoda and Crustacea, while much of the biomass was due to early instars of several species of Trichoptera.
3. Invertebrate density and biomass decreased significantly with depth in the substrate (ANOVA; P <0.05). Annual mean density decreased from 1,346,844 individuals m⁻³ at the surface to 13,578 individuals m⁻³ at 15–30 cm. Annual mean biomass decreased from 66.30 g m⁻³ at the surface to 0.44 g m⁻³ at 15–30 cm.
4. Dissolved oxygen decreased markedly from the surface to the 5 cm depth in the substrate, anaerobic conditions often occurring below 10 cm. Density and biomass both showed a significant positive relationship with dissolved oxygen concentration (Linear regression; P <0.05).
5. Physical forces were important in structuring the subsurface invertebrate community. Besides low dissolved oxygen concentration, sediment scouring resulting from storm discharge dramatically reduced density and biomass     

Influence of food quality and temperature on life history characteristics of the parthenogenetic mayfly, Cloeon triangulifer

SUMMARY. 1. Laboratory and field data indicate that Cloeon triangulifer McDunnough has at least three generations per year in White Clay Creek (Pennsylvania, U.S.A.).
2. The duration of the egg stage ranged from 5 days at 30°C to about 90 days at 10°C.
3. Larvae completed development (i.e. first instar to adult) in 27 days at 25°C, 45 days at 20°C, and 179 days at 10°C on an algal diet dominated by diatoms.
4. Larvae reared on hickory leaves completed development in 30 days at 25°C but died prior to metamorphosis at 10, 15 and 20°C.
5. Adult size (i.e. body length, wing length and dry mass) and fecundity were inversely related to rearing temperature for all laboratory and field experiments.
6. The significant interaction of food quality and temperature suggest that these factors may be important in understanding geographic variation in the life history of C. triangulifer.     

The fecundity, development and host relationships of Ceratobaeus spp. (Hymenoptera: Scelionidae), parasites of spider eggs

Abstract. 1. Ceratobaeus spp. enter the nest of their host spider and oviposit into eggs through the thin silk eggsac.
2. Temperatures below 15° C limit oviposition by slowing parasites down.
3. Males emerge prior to females and mate with their sibs. Sex ratios of 6.6–6.0:1 in favour of females were observed in the field and laboratory for two species.
4. Even though females can oviposit almost immediately after emergence their full complement of eggs (= 65) is not reached until several days later.
5. Superparasitism is low and appears to occur from subsequent accidental ovipositions. No marking of the external surface of hosts was observed.
6. Parasites overwinter as adults under bark. They do not feed as adults nor do they reabsorb their eggs, but rather oviposit as soon as host eggs become available in spring.
7. Successful oviposition occurs in later stages of host eggs reared at 15° C and 20° C than it does at 25°C. Different rates of development between host and parasite is proposed as an explanation for this phenomenon.
8. The species studied show varying degrees of specificity but each has a dominant host. Location of hosts involves cues from the habitat (bark), silk nests of spiders, and some factor associated with host eggs.     

Hammondia pardalis sp. n. (Sarcocystidae) from the Ocelot, Felis pardalis, and Experimental Infection of Other Felines

Synopsis.
Hammondia pardals sp. n. (Eimeriorina: Sarcocystidae) from Panama Canal Zone is described as an obligate heteroxenous coccidian, with felids as the final host and laboratory mice as the experimental intermediate host. Ovoid oocysts. measuring 40.8 (36–46) × 28.5 (25–35) m. are shed unsporulated. Oocysts were infective only for the intermediate host. the laboratory mouse, Mus musculus , and the intracellular cysts were infective only for felids. Attempted passage of tissue cysts from mouse to mouse was unsuccessful.
Mice fed 5 × 10⁴ sporulated oocysts were found to harbor small intracellular cysts, 13–16 × 10–15 m, in the mesenteric lymph nodes, lungs, and intestinal submucosa 15 days postinfection. The meronts in these early cysts were stubby and measured 3 × 6 m. The prepatent period in the felids was 5 to 8 days and the patent period 5–13 days. Experimental infections of definitive hosts were successful with 6/6 domestic laboratory-reared kittens, Felis catus ; 5/5 ocelots, F. pardalis ; and 1/1 jaguarundi, F. yagouaroundi. None of the exposed raccoons, Procyon lotor , shed oocysts.