Promoter engineering of cascade biocatalysis for α-ketoglutaric acid production by coexpressing l-glutamate oxidase and catalase

Applied Microbiology and Biotechnology - Enzymatic transformation is now an attractive alternative for α-ketoglutaric acid (α-KG) production, but the oxidative deamination from l-glutamic...     

Chemical sensitivity of the hyperneural nerve-muscle preparation of the American cockroach

The hyperneural muscle of Periplaneta americana responded with sustained contracture to applications of l-glutamic acid at near 10^?4 M. d-glutamic acid was much less active. The responses of a particular preparation to glutamate were usually extremely consistent and highly reproducible; however, some preparations showed no response to l-glutamic acid even at 10^?2 M whereas neurally evoked responses were normal. High magnesium, low calcium perfused onto the preparations blocked neurally evoked contractions. The glutamate response was blocked reversibly in low calcium solutions. suggesting that the glutamate effect, when present, was presynaptic.Dopamine, acetylcholine, 5-hydroxytryptamine, synephrine, Rogitine^®, strychnine, strychnine, pentobarbital, and picrotoxin, all suspected to varying degrees of some action on insect central or peripheral synaptic transmission, had no effect on the patterns of neurally evoked contracture of the hyperneural muscle. A new transducer is described for use with low force insect muscle contractions.     

Occurrence of meso-alpha, epsilon-diaminopimelate dehydrogenase in Bacillus sphaericus.

A new amino acid dehydrogenase catalyzing the oxidative deamination of meso-α,?-diaminopimelate was found in the crude extract of Bacillus sphaericus IFO 3525. This dehydrogenase requiring NADP was specific for meso-diaminopimelate and the other isomers were not substrates. The enzyme was optimally active at about pH 10.5. NAD could not replace NADP.     

Characterization of an NAD(P)+-dependent meso-diaminopimelate dehydrogenase from Thermosyntropha lipolytica

meso-Diaminopimelate dehydrogenase (meso-DAPDH) catalyzes the reversible NADP⁺-dependent oxidative deamination of meso-2,6-diaminopimelate (meso-DAP) to produce l-2-amino-6-oxopimelate. meso-DAPDH is divided into two major clusters, types I and II, based on substrate specificity and structural characteristic. Here, we describe a novel type II meso-DAPDH from Thermosyntropha lipolytica (TlDAPDH). The gene encoding a putative TlDAPDH was expressed in Escherichia coli cells, and then the enzyme was purified 7.3-fold to homogeneity from the crude cell extract. The molecule of TlDAPDH seemed to form a hexamer, which is the typical structural characteristic of type II meso-DAPDHs. The purified enzyme exhibited oxidative deamination activity toward meso-DAP with both NADP⁺ and NAD⁺ as coenzymes. TlDAPDH exhibited reductive amination activity of corresponding 2-oxo acid to produce d-amino acid. In particular, the productivities for d-aspartate and d-glutamate have not been reported in the type II enzymes. The optimum pH and temperature for oxidative deamination of meso-DAP were 10.5 and 55°C, respectively. TlDAPDH retained more than 80% of its activity after incubation for 30 min at temperatures between 50°C and 65°C and in the pH range of 4.5–9.5. Moreover, the coenzyme and substrate recognition mechanisms of TlDAPDH were elucidated based on a multiple sequence alignment and the homology model. The results of these analyses suggested that the molecular mechanisms for coenzyme and substrate recognition of TlDAPDH were similar to those of meso-DAPDH from S. thermophilum, which is the representative type II enzyme. Based on the kinetic characteristics and structural comparison, TlDAPDH was considered to be a novel type II meso-DAPDH.     

α-Methylene-γ-aminobutyric acid from Mycena pura

α-Methylene-γ-aminobutyric acid was isolated and characterized from fruit bodies of Mycena pura. It was the decarboxylation product of l-γ-methyleneglutamic acid by l-glutamic acid decarboxylase.     

A resolution of glutamic acid

N-Carbobenzoxy-dl-glutamic acid was asymmetrically hydrolyzed by hog kidney acylase to l-glutamic acid ([α]_D = +31.9 °) and N-carbobenzoxy-d-glutamic acid ([α]_d = + 7.5 °). On catalytic hydrogenation of the latter, d-glutamic acid ([α]_d = ?31.5 °) was obtained readily and in high yield.     

A novel aryl-hydrazide from the marine lichen Lichina pygmaea: Isolation,synthesis of derivatives,and cytotoxicity assays

A new aryl-hydrazide l-glutamic acid derivative, pygmeine (3), was isolated from a methanolic extract of Lichina pygmaea, a marine lichen. Synthetic derivatives obtained via a two-step coupling of l-glutamic acid with phenylhydrazine moieties were useful to elucidate the structure of 3 and to carry out biological assays. Thus, the cytotoxicity of the ortho-, meta-, and para-hydroxyl isomers along with their respective benzyl intermediates, and a natural methoxylated analog, were evaluated on murine and human melanoma cells (B16, A375). The para-hydroxyl isomer 6 was found to be the most active (IC₅₀ = 1.6 μM) on B16 cells.     

Initial steps in the degradation of phosphinothricin (glufosinate) by soil bacteria

Three hundred bacterial isolates from soil were tested for resistance against phosphinothricin [PPT; dl-homoalanin-4-yl(methyl)phosphinic acid], the active ingredient of the herbicide BASTA. Eight resistant bacterial strains and Escherichia coli were analyzed for PPT-transforming activities. At least three different enzymatic reactions could be detected in cell extracts. In six strains an acetyltransferase was active, synthesizing N-acetyl-PPT in the presence of PPT and acetyl coenzyme A. All strains could degrade PPT to its corresponding 2-oxoacid {2-oxo-4-[(hydroxy)(methyl)phosphinoyl] butyric acid} by transamination. Rhodococcus sp., the only tested strain that was able to utilize PPT as a sole source of nitrogen, formed 2-oxo-4[(hydroxy)(methyl)phosphinoyl]butyric acid by oxidative deamination. This enzymatic activity was inducible by l-glutamic acid or PPT itself but not in the presence of NH(4). d-PPT transformation was not detectable in any of the investigated strains.     

A new biosynthetic pathway of porphyrins from isopropanol

A new biosynthetic pathway, which can produce both vitamin B₁₂ and large amounts of porphyrins from isopropanol, was identified in Arthrobacter hyalinus using carbon-13 stable isotope tracer techniques and carbon-13 nuclear magnetic resonance (¹³C-NMR) spectroscopy. Studies on the incorporation of [2-¹³C]isopropanol, [1- or 2-¹³C]sodium acetate, l-[1-¹³C]glutamate, and [1-, 2-, 3-, 4-, 5-¹³C]5-aminolevulinic acid into uroporphyrinogen III showed that isopropanol was metabolized into uroporphyrinogen III through acetyl CoA and that 5-aminolevulinic acid was produced from l-glutamic acid and not via Shemin's pathway.     

A newly isolated Bacillus siamensis SB1001 for mass production of poly-γ-glutamic acid

Poly-γ-glutamic acid (γ-PGA) is a retaining agent; it has applications in the food, medicine, agriculture, cosmetics and wastewater treatment industries. Most of the γ-PGA producing strains belong to the genus Bacillus. This study reports on a novel γ-PGA producing species. Bacillus siamensis SB1001 was screened and isolated from organically cultivated soybeans exhibiting a high γ-PGA producing ability. The fermentation medium and culture parameters for γ-PGA production by Bacillus siamensis SB1001 were optimized by statistical methods. The sucrose, l-glutamic acid and dipotassium phosphate in the medium were shown to be the significant factors of the γ-PGA production, and the optimum medium obtained consisted of the following: 106.86 g/L sucrose, 69.84 g/L l-glutamic acid and 2.39 g/L dipotassium phosphate. Using the optimized medium, 25.22 g/L γ-PGA were produced with a productivity of 1.05 g/L/h. The γ-PGA obtained had a molecular weight of 7.9 × 10⁵ Da and a polydispersity index of 2.34, and the ratio of d-/L-glutamic acid was 89.71%:10.29%. To the best of our knowledge, this is the first report of γ-PGA production by B. siamensis strain. B. siamensis SB1001 has great potential as an industrial γ-PGA producer.     

Steady-state kinetics of glutamate dehydrogenase from Pisum sativum L. mitochondria.

Glutamate dehydrogenase [l-glutamate:NAD⁺ oxidoreductase (deaminating) EC 1.4.1.2]has been purified 487-fold from pea stem mitochondria. The enzyme has a specific activity in the presence of 1 mm CaCl₂ of 54 Enzyme Commission (EC) units. Calcium, manganese, and zinc ions activate the reductive amination reaction. The [Ca²⁺]_0.5 for activation by calcium is 9 μm. The extent of activation by calcium changed during purification and storage. The oxidative deamination was slightly inhibited by calcium. The pH optimum for the reductive amination reaction was 8.0 and for the oxidative deamination was 9.2. At pH 8.0 and in the presence of 1 mm CaCl₂ with the ionic strength held constant the enzyme showed normal kinetics for the reductive amination reaction. Under identical conditions except for the absence of CaCl₂ the oxidative deamination reaction showed normal kinetics for glutamate. There was substrate activation at high NAD⁺ concentrations and these concentrations were avoided in the kinetic analysis. A steady-state kinetic analysis showed that a simple mechanism could not be in effect and a partially random mechanism is proposed.     

Regulation of Nicotinamide Adenine Dinucleotide Phosphate-specific Glutamate Dehydrogenase in Germinated Spores of Geotrichum candidum

Germinating spores of Geotrichum candidum produce only a nicotinamide adenine dinucleotide phosphate-linked glutamate dehydrogenase. Synthesis of glutamate dehydrogenase was repressed by the presence of ammonia, whereas urea, glutamate, or glutamine were ineffective. The enzyme was not subject to catabolite repression and was localized in the cell sap fraction. The glutamate dehydrogenase has been purified 93-fold and showed maximal activity at pH 8.2 in the forward and reverse directions. When measuring the initial reaction rate at pH 7.2, a variety of tricarboxylic acid cycle intermediates displayed additive and unidirectional activation of the reductive amination reaction and inhibition of the oxidative deamination reaction. The modulating effects were pH-dependent and diminished at alkaline pH values. Substrate inhibition exerted by α-ketoglutarate was strongest at neutral pH.     

α-Methyl-l-glutamic acid uptake by high affinity dicarboxylic amino acid transport system in Streptococcus faecalis

The transport of α-methyl-l-glutamic acid was studied in Streptococcus faecalis. Energy-dependent uptake against substantial concentration gradients was observed. Kinetic experiments indicated that, in contrast to l-glutamic acid, only a single catalytic component (high affinity) and a diffusion controlled process participated in α-methyl-l-glutamic acid uptake. At concentrations up to 10 mM, α-methylglutamate transport was almost completely abolished in a mutant strain lacking a high affinity dicarboxylic amino acid transport system. In competition experiments, α-methylglutamic acid antagonized glutamate uptake via the high affinity system, and only slightly via the low affinity system. Column chromatography of cell extracts showed that very little (approx. 5%) of the accumulated amino acid was converted to metabolites during short term incubations. These studies indicate that, at concentrations up to 3–5 mM, α-methyl-l-glutamic acid can be used as a specific, relatively metabolically inert substrate of the high affinity dicarboxylic amino acid transport system in S. faecalis.     

The effects of potassium and membrane potential on sodium-dependent glutamic acid uptake

The uptake of l-glutamic acid into brush-border membrane vesicles isolated from rat renal proximal tubules is Na⁺-dependent. In contrast to Na⁺-dependent uptake of d-glucose, pre-equilibration of the vesicles with K⁺ stimulates l-glutamic acid uptake. Imposition of a K⁺ gradient ($\text{[}\text{K}{}_{\mathrm{i}}{}^{\mathrm{+}}\text{] > [}\text{K}{}_{\mathrm{o}}{}^{\mathrm{+}}\text{]}$) further enhances Na⁺-dependent l-glutamic acid uptake, but leaves K⁺-dependent glucose transport unchanged. If K⁺ is present only at the outside of the vesicles, transport is inhibited. Intravesicular Rb⁺ and, to a lesser extent, Cs⁺ can replace intravesicular K⁺ to stimulate l-glutamic acid uptake. Changes in membrane potential incurred by the imposition of an H⁺-diffusion potential or anion replacement markedly affect Na⁺-dependent glutamic acid uptake only in the presence of K⁺. Experiments with a potential-sensitive cyanine dye also indicate that, in the presence of intravesicular K⁺ a charge movement is involved in Na⁺-dependent transport of l-glutamic acid.The data indicate that Na⁺-dependent l-glutamic acid transport can be additionally energized by a K⁺ gradient. Furthermore, intravesicular K⁺ renders Na⁺-dependent l-glutamic acid transport sensitive to changes in the transmembrane electrical potential difference.     

Studies on the reaction specificity of the flavoprotein lysine monooxygenase with modified substrates

Various modified substrates of lysine monooxygenase were examined to determine whether they were oxygenated or oxidized. Among various methyllysines tested, N^?- and δ-methyllysine underwent predominantly an oxygenative decarboxylation, producing the corresponding acid amides, while γ-methyllysine underwent predominantly an oxidative deamination with an α-keto acid as the reaction product. β-Methyllysine was inactive as substrate. All four methyllysines decreased the cooperativity of the enzyme with the normal substrate, lysine. Furthermore, lysine oxygenation was competitively inhibited by all of them except for β-methyllysine, which was much less inhibitory than the other methyllysines. Other analogs with a chloro or hydroxyl group at either the δ or the γ position were both oxygenated and oxidized. Analogs with a modified carboxyl or α-amino group were inactive as substrates.     

Non-enzymatic PLP-dependent oxidative deamination of amino acids induces higher alcohol synthesis

Pyridoxal phosphate (PLP) is an organic cofactor found in all transaminase enzymes. In this study PLP was used to replace the enzymatic deamination step in the Ehrlich pathway, for the oxidative conversion of amino acids into 2-keto acids. PLP functions in an enzymeindependent manner. It was further used in the synthesis of higher alcohols through a sequential enzymatic reduction in vitro and in vivo. PLP-dependent oxidation was investigated against five representative amino acids: valine, leucine, isoleucine, norvaline, and phenylalanine. In vitro amino acid oxidation resulted in approximately 45 ~ 75% [mole/mole] of each 2-keto acid conversion and in vitro ammonia formation was less than 2-keto acid formation, with 20% of conversion yields. Whole cell E. coli expressing reduction enzymes KivD/ADH with both single amino acid and amino acid mixture (4% yeast extract) gave the highest yield (30 ~ 55%) in the presence of the PLP-Cu complex and following enzymatic reactions.     

Cytosine-to-Uracil Deamination by SssI DNA Methyltransferase

The prokaryotic DNA(cytosine-5)methyltransferase M.SssI shares the specificity of eukaryotic DNA methyltransferases (CG) and is an important model and experimental tool in the study of eukaryotic DNA methylation. Previously, M.SssI was shown to be able to catalyze deamination of the target cytosine to uracil if the methyl donor S-adenosyl-methionine (SAM) was missing from the reaction. To test whether this side-activity of the enzyme can be used to distinguish between unmethylated and C5-methylated cytosines in CG dinucleotides, we re-investigated, using a sensitive genetic reversion assay, the cytosine deaminase activity of M.SssI. Confirming previous results we showed that M.SssI can deaminate cytosine to uracil in a slow reaction in the absence of SAM and that the rate of this reaction can be increased by the SAM analogue 5’-amino-5’-deoxyadenosine. We could not detect M.SssI-catalyzed deamination of C5-methylcytosine (^m5C). We found conditions where the rate of M.SssI mediated C-to-U deamination was at least 100-fold higher than the rate of ^m5C-to-T conversion. Although this difference in reactivities suggests that the enzyme could be used to identify C5-methylated cytosines in the epigenetically important CG dinucleotides, the rate of M.SssI mediated cytosine deamination is too low to become an enzymatic alternative to the bisulfite reaction. Amino acid replacements in the presumed SAM binding pocket of M.SssI (F17S and G19D) resulted in greatly reduced methyltransferase activity. The G19D variant showed cytosine deaminase activity in E. coli, at physiological SAM concentrations. Interestingly, the C-to-U deaminase activity was also detectable in an E. coli ung ⁺ host proficient in uracil excision repair.     

Characteristics of a biopolymer flocculant produced by Bacillus sp. PY-90

A biopolymer flocculant-producing bacterium, strain PY-90, was isolated and considered to belong to Bacillus subtilis. For the production of biopolymer flocculant by strain PY-90, a medium containing 2 to 5% l-glutamic acid as a nitrogen source was suitable. The biopolymer flocculant was a homopolymer composed of glutamic acid residues and was presumed to be poly(γ-glutamic acid). In kaolin suspension, the highest flocculating activity was attained at the biopolymer flocculant concentration of 20 mg/l. The flocculating activity was increased by the addition of Ca²⁺, and the optimum concentration of which was about 2 to 8 mM. The flocculating activity was high in an acidic pH range of 3.0 to 5.0, and decreased upon heating at 100°C.     

Oxidative Deamination of Serum Albumins by (-)-Epigallocatechin-3-O-Gallate: A Potential Mechanism for the Formation of Innate Antigens by Antioxidants

(-)-Epigallocatechin-3-O-gallate (EGCG), the most abundant polyphenol in green tea, mediates the oxidative modification of proteins, generating protein carbonyls. However, the underlying molecular mechanism remains unclear. Here we analyzed the EGCG-derived intermediates generated upon incubation with the human serum albumin (HSA) and established that EGCG selectively oxidized the lysine residues via its oxidative deamination activity. In addition, we characterized the EGCG-oxidized proteins and discovered that the EGCG could be an endogenous source of the electrically-transformed proteins that could be recognized by the natural antibodies. When HSA was incubated with EGCG in the phosphate-buffered saline (pH 7.4) at 37°C, the protein carbonylation was associated with the formation of EGCG-derived products, such as the protein-bound EGCG, oxidized EGCG, and aminated EGCG. The aminated EGCG was also detected in the sera from the mice treated with EGCG in vivo. EGCG selectively oxidized lysine residues at the EGCG-binding domains in HSA to generate an oxidatively deaminated product, aminoadipic semialdehyde. In addition, EGCG treatment results in the increased negative charge of the protein due to the oxidative deamination of the lysine residues. More strikingly, the formation of protein carbonyls by EGCG markedly increased its cross-reactivity with the natural IgM antibodies. These findings suggest that many of the beneficial effects of EGCG may be partly attributed to its oxidative deamination activity, generating the oxidized proteins as a target of natural antibodies.