GIS-based approach for incorporating the connectivity of ecological networks into regional planning

Conservation networks, such as the European Natura 2000, are sets of designated reserves, the persistence of which requires the contribution of the non-protected territory in terms of connectivity. For that reason, the European Union´s Habitats Directive urges the improvement of its ecological coherence. This work reports a spatial modelling methodology to complete the existing Natura 2000 network in the Basque Country with elements of ecological connectivity. It is based on cost surfaces built for a set of target species associated with the dominant habitats of the region. Least-cost paths were then used to identify zones of probable connection between reserves. The final network is made of core areas, link corridors, link areas and buffer zones, all with an explicit spatial allocation. The regional government of the Basque Country subsequently incorporated this ecological network as a reference for the evaluation of regional development plans in 2005.     

Far from the madding crowd: Tolerance toward human disturbance shapes distribution and connectivity patterns of closely related Martes spp.

To assess niche overlap between the most similar European sympatric carnivores, the pine marten Martes martes and stone marten Martes foina, and outline their potential distributions and connectivity corridors in Central Italy, we applied a multivariate kernel density procedure which allowed to assess both species' ecological hypervolumes based on a set of 16 environmental predictors and used the resulting probability of occurrence map as a resistance surface in electrical circuit theory-based models. Distance to watercourses and percent cover of deciduous forest and shrubland were the most relevant factors shaping pine marten ecological niche, while stone marten distribution was mainly shaped by human population density and cover of both human settlements and deciduous forest. Overlap between the hypervolumes of the two martens was low-to-moderate, while, on average, landscape connectivity was higher for the stone marten. The inclusion in the models of human disturbance-related variables enabled to define a possible mechanism driving habitat partitioning in human-altered landscapes. Based on our results, increasing human density and urbanization of European lowland and hilly landscapes are expected to represent a greater threat to the pine marten than the stone marten.     

Habitat requirements of Eurasian pine marten <Emphasis Type="Italic">Martes martes</Emphasis> in a Mediterranean environment

Evaluating presence and habitat requirements of small carnivores is essential for their conservation. The Eurasian pine marten Martes martes, often described as a habitat specialist associated primarily with forest habitats, has been recently found to live even in patchily wooded country and in shrublands. We evaluated the environmental factors that determine the distribution of the pine marten in a Mediterranean landscape on the island of Sardinia (central Italy). Camera trapping sessions and scat surveys were carried out to assess the presence of the species, then a potential distribution model was developed using ecological niche factor analysis (ENFA), which requires only presence data. The pine marten selected highest altitudes, shrublands, rocky areas, and woodlands, and avoided urban areas and arable lands. Our results indicate that pine marten distribution in our study area is constrained by these variables. The ENFA analysis provided important clues about the distribution range of M. martes and its preferential environmental conditions, updating knowledge of its ecological requirements in Italy.     

Do well-connected landscapes promote road-related mortality?

Cost surface (CS) models have emerged as a useful tool to examine the interactions between landscapes patterns and wildlife at large-scale extents. This approach is particularly relevant to guide conservation planning for species that show vulnerability to road networks in human-dominated landscapes. In this study, we measured the functional connectivity of the landscape in southern Portugal and examined how it may be related to stone marten road mortality risk. We addressed three questions: (1) How different levels of landscape connectivity influence stone marten occurrence in montado patches? (2) Is there any relation between montado patches connectivity and stone marten road mortality risk? (3) If so, which road-related features might be responsible for the species’ high road mortality? We developed a series of connectivity models using CS scenarios with different resistance values given to each vegetation cover type to reflect different resistance to species movement. Our models showed that the likelihood of occurrence of stone marten decreased with distance to source areas, meaning continuous montado. Open areas and riparian areas within open area matrices entailed increased costs. We found higher stone marten mortality on roads in well-connected areas. Road sinuosity was an important factor influencing the mortality in those areas. This result challenges the way that connectivity and its relation to mortality has been generally regarded. Clearly, landscape connectivity and road-related mortality are not independent.     

Isolation by distance,resistance and/or clusters? Lessons learned from a forest‐dwelling carnivore inhabiting a heterogeneous landscape

Landscape genetics provides a valuable framework to understand how landscape features influence gene flow and to disentangle the factors that lead to discrete and/or clinal population structure. Here, we attempt to differentiate between these processes in a forest‐dwelling small carnivore [European pine marten (Martes martes)]. Specifically, we used complementary analytical approaches to quantify the spatially explicit genetic structure and diversity and analyse patterns of gene flow for 140 individuals genotyped at 15 microsatellite loci. We first used spatially explicit and nonspatial Bayesian clustering algorithms to partition the sample into discrete clusters and evaluate hypotheses of ‘isolation by barriers’ (IBB). We further characterized the relationships between genetic distance and geographical (‘isolation by distance’, IBD) and ecological distances (‘isolation by resistance’, IBR) obtained from optimized landscape models. Using a reciprocal causal modelling approach, we competed the IBD, IBR and IBB hypotheses with each other to unravel factors driving population genetic structure. Additionally, we further assessed spatially explicit indices of genetic diversity using sGD across potentially overlapping genetic neighbourhoods that matched the inferred population structure. Our results revealed a complex spatial genetic cline that appears to be driven jointly by IBD and partial barriers to gene flow (IBB) associated with poor habitat and interspecific competition. Habitat loss and fragmentation, in synergy with past overharvesting and possible interspecific competition with sympatric stone marten (Martes foina), are likely the main factors responsible for the spatial genetic structure we observed. These results emphasize the need for a more thorough evaluation of discrete and clinal hypotheses governing gene flow in landscape genetic studies, and the potential influence of different limiting factors affecting genetic structure at different spatial scales.     

Population connectivity and genetic diversity of American marten (Martes americana) in the United States northern Rocky Mountains in a climate change context

Climate change is likely to alter population connectivity, particularly for species associated with higher elevation environments. The goal of this study is to predict the potential effects of future climate change on population connectivity and genetic diversity of American marten populations across a 30.2 million hectare region of the in the US northern Rocky Mountains. We use a landscape resistance model validated from empirical landscape genetics modeling to predict the current and expected future extent and fragmentation of American marten dispersal habitat under five climate change scenarios, corresponding to climatic warming of between 0.7 and 3.3 °C, consistent with expected climate change by year 2080. We predict the regions of the current and future landscapes where gene flow is expected to be governed by isolation by distance and the regions where population fragmentation is expected to limit gene flow. Finally, we predict changes in the strength and location of predicted movement corridors, fracture zones and the location of dispersal barriers across the study area in each scenario. We found that under the current climate, gene flow is predicted to be limited primarily by distance (isolation), and landscape structure does not significantly limit gene flow, resulting in very high genetic diversity over most of the study area. Projected climatic warming substantially reduces the extent and increases the fragmentation of marten populations in the western and northwestern parts of the study area. In contrast, climate change is not predicted to fragment the extensive higher elevation mountain massifs in central Idaho, the northern U.S. continental divide, and Greater Yellowstone Ecosystem. In addition, we show locations in the study area that are important corridors in the current landscape that remain intact across the climate change scenarios.     

A new species of corynoppia (acari, oribatida, oppiidae) from biscay (the basque country, northern Spain)

A new oribatid mite belonging to the family Oppiidae is described from the province of Biscay in the Basque Country, Northern Spain. We propose the name Corynoppia papillisetigera for it, whose shape and size of setae ta (c2) bearing papillae is the main and distinctive feature to separate it from allied species, such as Corynoppia foliatoides . For the moment it has been found in a coastal meadow and eucaliptus, evergreen-oak, and pine forests.     

Age and sex-dependent effects of landscape cover and trapping on the spatial genetic structure of the stone marten (<Emphasis Type="Italic">Martes foina</Emphasis>)

Maintenance of genetic variation is of critical importance for wild populations since low levels limit the species’ ability to respond to different threats (diseases, predators, environmental changes) in both the long and the short term. Human activities could impact the genetic variation of wild species in multiple ways, including via fragmentation and harvesting. We used an individual-based landscape genetics approach to describe the impact of landscape elements and trapping pressure on the spatial genetic structure of a large sample (n = 370) of the stone marten (Martes foina) in central-eastern France (Bresse). An analysis of isolation-by-resistance using a causal modeling approach showed an influence of landscape cover and/or trapping pressure on gene flow according to age and sex class. Overall, the connectivity in the study area is provided mainly by vegetation cover, while roads and open areas partially impede it. Unexpectedly for this “urban adapter” species, buildings could reduce gene flow. We also emphasized the sex-dependent effect of trapping on gene flow. Genetic differentiation in males was influenced by trapping pressure and landscape structure while only the latter influenced genetic differentiation in females. A stronger isolation by distance in males than in females suggested that at the scale of the study area, males are more exposed to trapping pressure, which reduces effective dispersal. Overall, the combination of both landscape and trapping costs might create an ‘ecological trap’ that could disrupt gene flow, leading to a north–south division in the study area.     

Trophic and spatial relationships of the pine marten (Martes martes) and American mink (Neovison vison) on mountain rivers of the Southern Urals

The American mink (Neovison vison) and pine marten (Martes martes) are the most common mustelid species in mountain forests of the Southern Urals. The bulk of the diet (85.3%) in the American mink consists of small mammals (35.8%), insects (22.7%), gastropods (14.1%), and fish (12.7%). In the pine marten, the main components comprising 79.6% of the diet are vegetable foods (29.8%), small mammals (27.0%), and insects (22.8%). The low diversity of their food spectra is accounted for by landscape and ecological features of the study region. The abundance of rodents is low, their distribution has a mosaic pattern, and other kinds of food are more abundant near rivers and streams, which explains the preference of both mustelid species for riparian biotopes. The breadth of trophic niches in the pine marten and American mink are 1.67 and 1.62, respectively, and the coefficient of their overlap is 0.75.     

Comparative Landscape Genetics of Three Closely Related Sympatric Hesperid Butterflies with Diverging Ecological Traits

To understand how landscape characteristics affect gene flow in species with diverging ecological traits, it is important to analyze taxonomically related sympatric species in the same landscape using identical methods. Here, we present such a comparative landscape genetic study involving three closely related Hesperid butterflies of the genus Thymelicus that represent a gradient of diverging ecological traits. We analyzed landscape effects on their gene flow by deriving inter-population connectivity estimates based on different species distribution models (SDMs), which were calculated from multiple landscape parameters. We then used SDM output maps to calculate circuit-theoretic connectivity estimates and statistically compared these estimates to actual genetic differentiation in each species. We based our inferences on two different analytical methods and two metrics of genetic differentiation. Results indicate that land use patterns influence population connectivity in the least mobile specialist T. acteon. In contrast, populations of the highly mobile generalist T. lineola were panmictic, lacking any landscape related effect on genetic differentiation. In the species with ecological traits in between those of the congeners, T. sylvestris, climate has a strong impact on inter-population connectivity. However, the relative importance of different landscape factors for connectivity varies when using different metrics of genetic differentiation in this species. Our results show that closely related species representing a gradient of ecological traits also show genetic structures and landscape genetic relationships that gradually change from a geographical macro- to micro-scale. Thus, the type and magnitude of landscape effects on gene flow can differ strongly even among closely related species inhabiting the same landscape, and depend on their relative degree of specialization. In addition, the use of different genetic differentiation metrics makes it possible to detect recent changes in the relative importance of landscape factors affecting gene flow, which likely change as a result of contemporary habitat alterations.     

Implications of incomplete networks on estimation of landscape genetic connectivity

Understanding processes and landscape features governing connectivity among individuals and populations is fundamental to many ecological, evolutionary, and conservation questions. Network analyses based on graph theory are emerging as a prominent approach to quantify patterns of connectivity with more recent applications in landscape genetics aimed at understanding the influence of landscape features on gene flow. Despite the strong conceptual framework of graph theory, the effect of incomplete networks resulting from missing nodes (i.e. populations) and their genetic connectivity network interactions on landscape genetic inferences remains unknown. We tested the violation of this assumption by subsampling from a known complete network of breeding ponds of the Columbia Spotted Frog (Rana luteiventris) in the Bighorn Crags (Idaho, USA). Variation in the proportion of missing nodes strongly influenced node-level centrality indices, whereas indices describing network-level properties were more robust. Overall incomplete networks combined with network algorithm types used to link nodes appears to be critical to the rank-order sensitivity of centrality indices and to the Mantel-based inferences made regarding the role of landscape features on gene flow. Our findings stress the importance of sampling effort and topological network structure as they both affect the estimation of genetic connectivity. Given that failing to account for uncertainty on network outcomes can lead to quantitatively different conclusions, we recommend the routine application of sensitivity analyses to network inputs and assumptions.     

The “Basqueness” of the Basques of Alava: A reappraisal from a multidisciplinary perspective

The genetic and linguistic peculiarity of the Basque population is well known. Analysis of the studies published to date on the Basque population reveals that these studies refer basically to the provinces of Vizcaya and Labourd, both in the Northern part of the Basque Country. Multidisciplinary information indicates that the landscape differences of the Basque Country could have conditioned differential population biodynamics in the Atlantic and Mediterranean parts of the Basque area. In order to evaluate this possibility, this study focuses on the genetic constitution of the Basque population of Alava (in the South of the Basque Country) through the analysis of several red-cell systems. The data obtained in this genetic study and those from archaeology, linguistics, ethnography, and skeletal biology suggest that within the “Basque population” there may be at least two distinct groups: an “Atlantic” group and a “Mediterranean” one, divided mainly by the watershed. This geographical feature could have led to a greater genetic isolation of the Northern slopes, with the South more open to population contact. This is reflected nowadays in the different cline distribution detected for most systems in the Alava Basques in comparison with other Basque and Iberian Peninsula series studied to date. © 1996 Wiley-Liss, Inc.     

Population crash in an invasive species following the recovery of a native predator: the case of the American grey squirrel and the European pine marten in Ireland

In Ireland, the UK and Italy, the invasive North American grey squirrel, Sciurus carolinensis, threatens the survival of the Eurasian red squirrel, Sciurus vulgaris, as the effects of competition and disease almost inevitably lead to total replacement of red squirrel populations. However the results of a recent national squirrel survey suggested that the normally invasive grey squirrel had gone into decline in the Irish midlands, which was anecdotally attributed to an increase in European pine marten, Martes martes, range and numbers. This study aimed to quantify changes in squirrel distribution in Ireland and to investigate the role, if any, of the pine marten in red and grey squirrel population dynamics. A distribution survey of the midlands was carried out which confirmed the grey squirrel population has crashed in approximately 9,000 km² of its former range and the red squirrel is common after an absence of up to 30 years. At landscape level, pine marten and red squirrel abundance were positively correlated, whereas a strong negative correlation between pine marten and grey squirrel presence at woodland level was found to exist. Squirrel demographics were determined by means of live trapping programs which confirmed that the red squirrel in the midlands is now in competitive release and the grey squirrel is present at unusually low density. This study provides the first evidence of a regional grey squirrel population crash and suggests that European pine marten abundance may be a critical factor in the American grey squirrel’s success or failure as an invasive species.     

Seed Dispersal Patterns by Large Frugivorous Mammals in a Degraded Mosaic Landscape

Seed dispersal by Red fox (Vulpes vulpes), Stone marten (Martes foina), and Wild boar (Sus scrofa) was analyzed in an extensively degraded mosaic landscape in Sierra Nevada (SE Spain). The main objective was to determine whether seed dispersal by mammals was related to habitat degradation within a mosaic of adjacent degraded patches mixed with native forest and thereby to determine the potential role of mammals as seed dispersers in degraded landscape units. For three consecutive years, mammal feces were collected in the fruit production period, extracting all seeds of woody species found therein and analyzing their viability. Feces were collected in three different plots for each of five different landscape units: shrubland, native forest, and dense, cleared, and fenced reforestation stands. Seeds from 16 woody species (which represent more than a half of the total fleshy‐fruited woody species available) were recorded, although some agrarian species are also introduced in a low percentage of the scats. Seeds showed a high viability rate for all dispersed species, irrespective of the mammal disperser. No differences in species composition appeared in the overall landscape units or in the seed density between degraded habitats. Due to the small patch size, the high viability of dispersed seeds, and the large home range of the large mammals, these three animal species act as efficient seed dispersers for a diverse assemblage of woody plant species regardless of the habitat type within this degradation framework. This fact has important consequences for the biodiversity recuperation in these degraded habitats, principally in pine plantations.     

An evaluation framework based on sustainability-related indicators for the comparison of conceptual approaches for ecological networks

Ecological networks (EN) are designed to maintain biodiversity and ecological processes by protecting habitats and their linkages. By considering the functional role of the landscape, EN can support the integration of ecological sustainability with human activities. Although all EN share the same general objectives, there are many different approaches for determining the spatial configuration of their components. The choice of an approach for the design of an EN has a major impact on the spatial configuration, ecological value, and ease of implementation of the resulting network. We applied different approaches to construct EN for the Saint-François River watershed (8700 km²) in southern Quebec, Canada. The approaches were based on single-species, multi-species, and landscape modeling categories. All of the resulting EN were evaluated using ecological, economic, and social spatial thematic indicators (TI) relevant to sustainable landscape management. This allowed us to quantitatively assess the impact of each approach and to establish their relative performance within a common framework. Our results showed that the conceptual approach for EN has a direct influence on their spatial configuration and performance. Single-species-, multi-species- and landscape-based categories produced very different EN. These results emphasize the importance of the selection of focal species and/or key environments for the design of EN. Our results also highlight the importance of adequately defining the desired objectives and expected functions of an EN, knowing that the results of the conceptual approach will be modified depending on the environment. Results are discussed in relation to the objectives sought by the implementation of the EN, spatial scale, and land use. Our evaluation framework is a useful tool for mitigating uncertainties associated with EN by facilitating the integration of stakeholders’ priorities and landscape management objectives.     

A Spatially Explicit Model of Functional Connectivity for the Endangered Przewalski’s Gazelle (Procapra przewalskii) in a Patchy Landscape

Background

Habitat fragmentation, associated with human population expansion, impedes dispersal, reduces gene flow and aggravates inbreeding in species on the brink of extinction. Both scientific and conservation communities increasingly realize that maintaining and restoring landscape connectivity is of vital importance in biodiversity conservation. Prior to any conservation initiatives, it is helpful to present conservation practitioners with a spatially explicit model of functional connectivity for the target species or landscape.

Methodology/Principal Findings

Using Przewalski’s gazelle (Procapra przewalskii) as a model of endangered ungulate species in highly fragmented landscape, we present a model providing spatially explicit information to inform the long-term preservation of well-connected metapopulations. We employed a Geographic Information System (GIS) and expert-literature method to create a habitat suitability map, to identify potential habitats and to delineate a functional connectivity network (least-cost movement corridors and paths) for the gazelle. Results indicated that there were limited suitable habitats for the gazelle, mainly found to the north and northwest of the Qinghai Lake where four of five potential habitat patches were identified. Fifteen pairs of least-cost corridors and paths were mapped connecting eleven extant populations and two neighboring potential patches. The least-cost paths ranged from 0.2 km to 26.8 km in length (averaging 12.4 km) and were all longer than corresponding Euclidean distances.

Conclusions/Significance

The model outputs were validated and supported by the latest findings in landscape genetics of the species, and may provide impetus for connectivity conservation programs. Dispersal barriers were examined and appropriate mitigation strategies were suggested. This study provides conservation practitioners with thorough and visualized information to reserve the landscape connectivity for Przewalski’s gazelle. In a general sense, we proposed a heuristic framework for species with similar biological and ecological characteristics.     

A river-based approach in reconstructing connectivity among protected areas: Insights and challenges from the Balkan region

Global efforts to halt biodiversity loss mandate the establishment of protected areas. In the face of habitat loss and climate uncertainty, large-scale networks of protected areas connected by corridors are needed to increase the dispersal and persistence potential of biota. For example, the recent European Biodiversity Strategy for 2030 defines clear targets for identifying, establishing and integrating ecological corridors, as part of a Trans-European Nature Network. Here, we examined whether rivers could serve as such corridors, facilitating landscape connectivity (i.e. extent to which landscape facilitates or impedes species movement, exchange of genes, natal dispersal and metapopulation dynamics) among protected areas hosted within different countries in the Balkan Peninsula, southeastern Europe. To quantitatively address this question, we calculated the proportion of the river network enclosed within a protected area per country to detect patterns of protection coverage and explored the degree to which spatial connections between 1878 protected areas are supported by the river network. Acknowledging that dams hinder instream continuity, we further quantified potential loss of connections between protected areas caused by the existence of already implemented or planned dam projects upon critical river habitats of endangered fish species. Our results highlight that Balkan rivers have great potential in providing the spatial connections needed to establish landscape connectivity between most of protected areas in the region. Still, heedless hydropower growth and dissimilarities in river protection between neighboring countries remain key challenges for the evolution of a relative framework. Transnational cooperation and systematic planning of infrastructure development could be the only efficient steps towards supporting the establishment of a river-based network to reconstruct connectivity between protected areas and meet biodiversity goals.     

A species distribution model for pine marten (<Emphasis Type="Italic">Martes martes</Emphasis>) in the least forested region of Europe

Species distribution modelling is a useful technique that provides data on factors that can influence a species range, identify high suitability areas and model future scenarios. The pine marten (Martes martes) has undergone major historical declines in abundance and distribution in Northern Ireland, similar to that which has occurred throughout its range. Currently, the species is in a phase of range expansion in Northern Ireland, in what is the least forested landscape in Europe. To assess the suitability of this environment for pine marten re-establishment, presence only distribution data combined with landcover data at a 10-km scale were used in a species distribution modelling study using Maxent. The results indicated that approximately 32% (4500 km²) of the land area of Northern Ireland had a high probability of pine marten occurrence. Pine marten distribution was positively associated with the extent of conifer forest landcover types, which also had the highest single attribute contribution to the model. Landcover types that were negatively associated with pine marten distribution included the extent of open, dwarf and urban areas.     

基于CL-PIOP方法的青岛市生态网络结构要素评价

景观生态学中的生态网络概念,已被国内外越来越多机构与学者所接受。生态网络结构要素的量化评价成为生态网络能否真正发挥在空间上调和自然生态保护与社会发展作用的关键。图形理论中相关评价指数为量化评价提供了方法。探讨如何基于图形理论中相关评价结果数据,发现对一个地区生态网络连通性有重要影响的斑块与廊道等生态网络结构要素。以青岛作为研究案例区域,使用最小成本路径模型构建了湿地和林地两种生态网络,并以一定阈值为标准对生态网络做等级划分,采用图形理论中的CL-PIOP评价方法作为基础方法,提出两种生态网络结构要素评价标准对结果数据作深入分析。分析结果表明:基于不同等级生态网络斑块的CL-PIOP重要性频次统计可以有效的识别对网络连通性有重要作用的斑块,既涵盖了几乎所有大面积的斑块,同时也包括一定数量的小面积斑块;CL-PIOP评价方法可在众多廊道中快速识别具有不可替代作用的廊道,且根据CL-PIOP值大小以及在各等级网络中非零CL-PIOP值的频率统计进一步确定廊道的重要程度。此外,不同等级网络中CL-PIOP值存在异常增大的斑块及其相关廊道对于网络构建与连通性增强有关键作用,这些斑块通常与面积等自身的属性无关,而与其在网络所处的位置相关。生态网络模型与图形理论相关方法结合可以快速有效的识别区域重要的生态用地,为相关规划中生态用地的保护、恢复提供量化依据。     

Where to sleep in a rural landscape? A comparative study of resting sites pattern in two syntopic Martes species

The niche‐complementarity hypothesis predicts that two sympatric species must differ in their requirements for one of the three main ecological dimensions (i.e. habitat use, diet, and activity time) to coexist. European pine marten Martes martes and stone marten M. foina are syntopic medium‐sized mustelids with very similar morphology and ecology for which resting sites are a key resource. To better understand how these species coexist, we investigated whether key features of their resting site pattern (number of resting sites, area over which they are distributed, main habitat type used for resting) differed. We used diurnal telemetry to identify resident individuals (e.g. spatially stable individuals over time) and to locate them during resting periods in a fragmented forested area in France. Stone marten used fewer resting sites distributed over a smaller surface area than pine marten. Most stone marten resting sites were located in open habitat (83%) in the proximity of human habitations, whereas pine martens rested almost exclusively in forest (98%). Sex, age, and season explained some variability in both the number of resting sites and the probability of resting within forested habitat for stone marten but not pine marten. The area covered by resting sites was larger in males than in females, but age modulated this difference in an opposite way for the two species. Such a pattern was expected given the intra‐sexual territoriality and the reproductive phenology of these species. Overall, stone marten showed higher inter‐individual variability in resting site pattern than pine marten. The particular pattern observed in subadult male stone martens during summer (increase in resting site surface area and in the probability to rest in forest) may reflect an attempt to settle in forests, and we discuss these implications in the context of interspecific competition.