Demographic structure and life history traits of the common goby Pomatoschistus microps (Teleostei,Gobiidae) in a Mediterranean coastal lagoon (Rhône River delta,France)

Demographic structure and life history traits of the common goby Pomatoschistus microps were investigated in a brackish water lagoon of the Rhône River delta (Mediterranean Sea, southern France). The size frequency distribution and gonadosomatic index indicated that three different age groups occurred and reproduced successively in the lagoon, resulting in a long spawning period from March to September and a high investment in reproduction. This high investment in reproduction, which contrasts with that found in other mostly northern European populations, probably relates to the unpredictability of the gobyˈs environmental conditions.     

Effects of management works on the interstitial fauna of floodplain aquatic systems (River Rhône, France)

Long-term changes in composition, structure and biodiversity (i.e. taxonomic richness, diversity index, species traits and habitat-affinity) of interstitial assemblages were studied in two floodplain systems: a restored backwater and an artificial drainage canal. Before restoration, the backwater, affected by both terrestrialisation and eutrophication, was weakly populated by a low diversified fauna dominated by walkers, macrofauna, detritivores, and stygoxenes (i.e. taxa that occur incidentally in ground waters) that reproduce biparentally and lack parental care. This backwater displayed an upstream–downstream gradient in response to restoration works. Upstream, the dredging of fine organic sediments favoured inputs of nutrient-poor groundwater and exchanges between groundwater and surface water that induced an increase in taxonomic richness (in both herbivores and stygoxenes). Downstream the deposition of fine sediment that was suspended in the water column by restoration work enhanced colmation that induced a decrease in herbivore and swimming taxa, and an increase in mesofaunal taxa, whilst phreatobites (i.e. taxa specialized to interstitial life) remained absent from the system. The drainage canal that was artificially hollowed-out to lower the surrounding water table, harbors mixed assemblages of epigean (i.e. taxa of surface-water habitats) and hypogean (i.e. taxa of groundwater habitats) taxa. The upstream part, which is weakly influenced by surface waters, was colonized by phreatobites as oligotrophic conditions increased. The intermediate part, which is fed by surface water and where mesotrophic conditions occurred as habitats progressively matured and diversified, showed diversification of its fauna. The downstream part of the drainage canal displayed the reverse dynamic – this suggests a reduction in groundwater supply due to the clogging of sediment interstices fine sediments, the deposition of which is linked to the Rossillon backwater restoration works.     

Technical behaviours and subsistence patterns of lower middle palaeolithic men the case of the site of Payre in the Rhône valley (South-East of France)

Excavations at Payre, between 1990 and 1998, yielded lithic artefacts and bones in four levels. Men came during the isotopic stage 5 interglacial (Eemian) and isotopic stages 6 and 7. Sites of this age are not many in this part of the Rhône valley and this cave is an important element for the oldest Middle Palaeolithic and its diversity. The men lived in the cave before/after departure of bears and hyenas or wolves, probably for short occupations. Sedimentological, palynological, palaeontological and geochronological studies carry much informations about human life in this cave. The artefacts belong to the Lower Middle Palaeolithic culture, which shows originalities as compared to the South-West of France and also sites of the South-East for example Orgnac 3 dating to isotopic stage 9. The South-East of France shows more and more its important place in the knowledge of the Mousterians and could become in future a rich country for informations.     

The La Voulte-sur-Rhône Lagerstätte (Middle Jurassic,France)

The La Voulte Lagerstätte (Jurassic, France) is characterized by a diverse and exceptionally well-preserved fauna. It was located along the western Tethyan margin where the submarine relief was steep. The sedimentation was dominated by marls suggesting a low energy and deep-water depositional environment. The La Voulte biota is remarkable for its biodiversity with about 60 different species. The major components are the arthropods (50% of the species), the cephalopods (10%) and the echinoderms (10%). Among the arthropods, the composition and some anatomical features suggest a relatively deep-water environment characterized by dim-light conditions. The cephalopods and other organisms (pycnogonids, asterids), have extant analogues that all live in deep-water niches always exceeding 200 m. The fauna as a whole bears the characteristic features of the present-day bathyal fauna. The La Voulte Lagerstätte may be one of the rare Jurassic Lagerstätten, if not the unique, to have fossilized a deep marine fauna.     

Rates of nitrification and carbon uptake in the Rhône River plume (northwestern Mediterranean Sea)

Nitrification rates were measured along a salinity gradient in the Rhône River estuary, using specific inhibitors (allylthiourea and chlorate) coupled with the measurement of change in nitrite concentration and inorganic carbon uptake by nitrifiers. Rates of ammonium and nitrite oxidation were similar up to 15 practical salinity units (from 1 to 2 mol N oxidized liter^-1 day^-1). For higher salinities, nitrite and ammonium oxidation rates were 0.14 and 0.23 mol N oxidized liter^-1 day^-1, respectively. Ammonium oxidizers assimilated 19–150 × 10–3 mol C liter^-1 day^-1, while nitrite oxidizers fixed 4.8–72.6 × 10–3 mol C liter^-1 day^-1. The amounts of nitrogen oxidized and C incorporated demonstrated a linear correlation (r ² > 0.99). The ratio of N oxidized to C incorporated ranged between 14.3 to 12.3 for ammonium oxidizers, and between 31.6 and 29 for nitrite oxidizers, the lower values being measured in seawater. Offprint requests to: M. Bianchi.     

Comparison of solutes, nutrients, and bacteria inputs from two types of groundwater to the Rhône river during an artificial drought

Solute, nutrient and bacterial inputs to the River Rhône from the interstitial habitat of a gravel bar and the floodplain aquifer were investigated during an artificial drought. Eight springs were investigated: four groundwater-fed springs in the floodplain, located at the bottom of the bank; and four interstitial-fed springs located at the downstream end of a gravel bar. During this period, the inflows of groundwater to the river represented an average input of 0.77 mg l^–1 of nitrogen (of which 93.3% were nitrates), 0.0187 mg l^–1 of total phosphorus (of which 42.2% was orthophosphate), 3.56 mg l^–1 of silica, 2.315 ± 0.703 mg l^–1 of dissolved organic carbon (DOC, of which 47% was biodegradable) and 7.3 × 10⁴ ± 3.7 × 10⁴ bacteria per ml (of which 8.8% were active). Silica, DOC, biodegradable DOC, and bacteria concentrations displayed temporal variations during the study, which seem to be linked to the biological activity of the groundwater biofilm. There was a strong heterogeneity between the two types of groundwater that flow to the river: concentrations of calcium and alkalinity were higher in bank springs than in gravel bars springs. In these latters, sulfate, sodium, nitrogen, phosphorus were significantly higher.     

Dynamics of Kudoa camarguensis (myxosporean) infection in two gobiid species,Pomatoschistus microps and P. minutus (Teleostei: Pisces), in the Rhĵne River delta,France

The occurrence of the myxosporean parasite Kudoa camarguensis was surveyed monthly during 1997 in a brackish-water lagoon of the Rh?ne River delta (France). K. camarguensis was found on its typical host, Pomatoschistus microps, and on an additional host, P. minutus. Prevalence and mean abundance were higher in the typical host than in the additional host due to differences in the temporal occupancy of the lagoon by the 2 species. The temporal occurrence of this myxosporean parasite is discussed in relation to the migratory habits of P. minutus and the sedentary habits of P. microps.     

Field evidence of dispersal of branchiopods, ostracods and bryozoans by teal (Anas?crecca) in the Camargue (southern France)

Invertebrate propagules may survive internal and external transports by waterbirds, thus facilitating their dispersal between aquatic habitats. However, field data on such transport remain limited, especially for exozoochory. We quantified and compared the rates of internal and external invertebrate transports simultaneously in a wintering population of teal (Anas crecca) in the Camargue (southern France). We inspected lower gut (rectum) contents of birds that had been shot (N = 366) and washed birds that had been live-trapped (N = 68) during the winters 2006–2007 and 2007–2008. At least one propagule was recorded in 2.5% and 10.3% of internal and external samples, respectively. Cladoceran, ostracod, plumatellid bryozoan and anostracan propagules were all recorded in both internal and external samples. Hatching confirmed their viability, except for anostracan eggs. At least three cladoceran species and two ostracod species were recorded, none of which had previously been shown to be dispersed by birds. Amongst external samples, we recorded a significant seasonal trend in 1 year with most propagules recorded before December, keeping with a seasonal decline in the availability of propagules on the water surface. This study provides evidence that teal may be important vectors of invertebrate dispersal both within the Camargue and along migratory flyways.     

Combined Genotypic,Phylogenetic, and Epidemiologic Analyses of Mycobacterium tuberculosis Genetic Diversity in the Rh?ne Alpes Region,France

BackgroundThe present work relates to identification and a deep molecular characterization of circulating Mycobacterium tuberculosis complex (MTBC) strains in the Rhône-Alpes region, France from 2000 to 2010. It aimed to provide with a first snapshot of MTBC genetic diversity in conjunction with bacterial drug resistance, type of disease and available demographic and epidemiologic characteristics over an eleven-year period, in the south-east of France.MethodsMycobacterium tuberculosis complex (MTBC) strains isolated in the Rhône-Alpes region, France (n = 2257, 1 isolate per patient) between 2000 and 2010 were analyzed by spoligotyping. MIRU-VNTR typing was applied on n = 1698 strains (with full results available for 974 strains). The data obtained were compared with the SITVIT2 database, followed by detailed genotyping, phylogenetic, and epidemiologic analyses in correlation with anonymized data on available demographic, and epidemiologic characteristics, and location of disease (pulmonary or extrapulmonary TB).ResultsThe most predominant spoligotyping clusters were SIT53/T1 (n = 346, 15.3%) > SIT50/H3 (n = 166, 7.35%) > SIT42/LAM9 (n = 125, 5.5%) > SIT1/Beijing (n = 72, 3.2%) > SIT47/H1 (n = 71, 3.1%). Evolutionary-recent strains belonging to the Principal Genetic Group (PGG) 2/3, or Euro-American lineages (T, LAM, Haarlem, X, S) were predominant and represented 1768 or 78.33% of all isolates. For strains having drug resistance information (n = 1119), any drug resistance accounted for 14.83% cases vs. 1.52% for multidrug resistance (MDR); and was significantly more associated with age group 21–40 years (p-value<0.001). Extra-pulmonary TB was more common among female patients while pulmonary TB predominated among men (p-value<0.001; OR = 2.16 95%CI [1.69; 2.77]). Also, BOV and CAS lineages were significantly well represented in patients affected by extra-pulmonary TB (p-value<0.001). The origin was known for 927/2257 patients: 376 (40.6%) being French-born vs. 551 (59.4%) Foreign-born. French patients were significantly older (mean age: 58.42 yrs 95%CI [56.04; 60.80]) than Foreign-born patients (mean age: 42.38 yrs. 95%CI [40.75; 44.0]).ConclusionThe study underlined the importance of imported TB cases on the genetic diversity and epidemiologic characteristics of circulating MTBC strains in Rhône-Alpes region, France over a large time-period. It helps better understand intricate relationships between certain lineages and geographic origin of the patients, and pinpoints genotypic and phylogenetic specificities of prevailing MTBC strains. Lastly, it also demonstrated a slow decline in isolation of M. africanum lineage in this region between 2000 and 2010.     

Unmown refuge areas and their influence on the survival of grassland birds in the Saône valley (France)

The objective of this study is to assess the attractiveness of refuge areas to the avifauna of the mown prairies in the Val de Saône region, after the disappearance of all cover by mowing. We compared the densities of several species, notably the corncrake, Crex crex, and the common quail, Coturnix corturnix, in three categories of refuge areas of unmown grasslands. Within the 10-m wide strips, covering in total 3–5% of the study area, bird densities at the beginning of August, after the hay-making season, are much higher than the densities recorded in the prairies during haymaking in July. Quail and corncrake densities are always lower, although still higher than the July densities in the prairie, in the fields of some 0.5 ha (covering 6.1% of another study area). In fields of 1 ha or more, the low densities of the two species reveal their poor attractiveness, or the absence of it. When during outside-in mowing some 10-m wide strips in the center of the fields are left uncut before the completion of mowing, or when during inside-out mowing two 5-m wide strips along the field margins are not mown, the contacts between the mowing machine and half of the unfledged young quails, and one-third of the unfledged young corncrakes, can be avoided.     

Suoidea du Miocène inférieur de Laugnac (Lot-et-Garonne, France)

The fossil vertebrate locality of Laugnac is the type locality of the Neogene mammalian zone MN2b. It has yielded many remains of Suoidea belonging to two different genera.Xenohyus venitor is characterized by its large size and especially its large central upper incisors, I1/ and I2/. It is quite difficult to know its phyletic relationships because the material is not abundant.Hyotherium cf.meisneri is more abundant with a quite good skull, pieces of skull, jaws and isolated teeth. It belongs to a peculiar lineage different from that ofH. major from Saint Gérand-le-Puy, France. It has some similarities withAureliachoerus aurelianensis from later geological levels (MN3-MN5).     

Influence of benthic and interstitial processes on nutrient changes along a regulated reach of a large river (Rhône River,France)

An enclosure study was conducted in Ranger Lake in south-central Ontario, Canada from 4 July to 5 August 1997 to determine predation effects of the larvae of the phantom midge fly Chaoboruson the zooplankton community. Zooplankton assemblages were established in 12 enclosures (2 m in diameter, 7.5 m deep). Three densities of fourth-instar Chaoborus trivittatus (0 l^–1, 0.1 l^–1 and 0.5 l^–1) were introduced as predator treatments to the enclosures. Temperature, dissolved oxygen and zooplankton community composition were monitored for six weeks. To determine if the zooplankton community composition changed, a repeated measures multivariate analysis was performed on percent biomass of Bosmina and calanoid copepods. There were no significant differences in mean taxon percent biomass among predator treatments. There were significant differences in mean taxon percent biomass between water layers (epilimnion and metalimnion). There were also significant differences in lengths of Bosmina and calanoid copepods among predator treatments at the end of the experiment. Crop content analysis of C. trivittatusshowed that Bosmina constituted 88–98% of the prey items found in the crops. These results demonstrate that the use of deep enclosures, a Chaoborus species which vertically migrates, and lower natural densities of Chaoborus may provide prey with an important natural refuge from predation and so allow a more accurate determination of the predation impact of Chaoborus trivittatusin temperate lakes where fish control Chaoborus densities.     

Factors affecting population size and vitality of Hamatocaulis vernicosus (Mitt.) Heden?s (Calliergonaceae, Musci)

Hamatocaulis vernicosus, a rare moss species, was monitored in 33 fens in the Czech Republic for five to six years. Population size, vitality and trends of population development were recorded. Water chemistry, water level fluctuation, vegetation type and cover, as well as mowing regime were assessed and the effect of these potential predictors on the species populations was examined. Populations of H. vernicosus were affected mainly by the density of vascular plants, the species thrived best in habitats with sparse herb and abundant ??brown moss?? cover. Other important factors included water table fluctuation and water concentration of iron. Populations were more vital and prospered better in sites with a stable water table and more iron-rich conditions. Dependence of population parameters on other measured characteristics of water chemistry was not detected.     

Growth rates and nutrition status of an open and a closed population of Rhododendron ferrugineum L . in the northwestern Alps (France)

 This study evaluates the utility of cell compounds as indicators of nutrition status of plant populations. An overview of the soluble free amino-acids, carbohydrates and P-compounds in the two year classes of leaves from Rhododendron ferrugineum populations showing variable biological performances, was drawn up using carbon-13 and phosphorus-31 nuclear magnetic resonance spectroscopy (NMR). The results showed differences between the age of leaves and the degree of population closure. The open population, which has the smallest growth rate and net primary productivity, had generally lower levels of amino-acids but higher levels of carbohydrates and P-compounds. Neither the amounts of mineral nitrogen produced by the soils nor the total nitrogen concentrations in leaves differed significantly. Still we hypothesize that the nitrogen availability could be largely responsible for the variations observed between the populations, as phosphorus analyses showed that the two populations did not suffer significant P deficiencies. Differences in vitality of R. ferrugineum may be explained by the fact that in an open population R. ferrugineum is forced into a situation of sharing nutrients with other species while in a closed population it is the sole species to exploit a specific pool of nutrients. Finally we observed that the ¹³C- and ³¹P-NMR approach is more suitable for studying the nutrition status of plant populations under field conditions than the determination of the total amounts of different elementary nutrients. Received: 2 May 1995 / Accepted: 22 February 1996     

Was it an explosion? Using population genetics to explore the dynamics of a recent radiation within Protea (Proteaceae L.)

Adaptive radiations likely underlie much of the world’s diversity, especially that of hyper‐diverse regions. They are usually characterized by a burst of speciation early in their evolutionary history, a pattern which can be detected using population genetic tools. The Cape Floristic Region (CFR) of southwestern South Africa is home to many spectacular plant radiations. Here, we investigate the white proteas (Protea section Exsertae), a typical CFR radiation, to determine if it demonstrates the burst of speciation associated with adaptive radiations in recent models. Inferences from individual assignment, tree‐based population relationships, and pairwise F‐statistics based on 10 microsatellite loci reveal that while the white proteas radiated recently they did not radiate explosively. In addition, we found evidence that there is little gene flow between sampled populations of most species. Taken together, these results demonstrate that within a small clade, the processes underlying the radiation are different from those envisioned by current models of adaptive radiation and suggest that geographical isolation could have played a role in the diversification of the group. Our study implicates both adaptive and non‐adaptive processes in the evolution of botanical diversity of the CFR.     

Is the central‐marginal hypothesis a general rule? Evidence from three distributions of an expanding mangrove species,Avicennia germinans (L.) L

The central‐marginal hypothesis (CMH) posits that range margins exhibit less genetic diversity and greater inter‐population genetic differentiation compared to range cores. CMH predictions are based on long‐held “abundant‐centre” assumptions of a decline in ecological conditions and abundances towards range margins. Although much empirical research has confirmed CMH, exceptions remain almost as common. We contend that mangroves provide a model system to test CMH that alleviates common confounding factors and may help clarify this lack of consensus. Here, we document changes in black mangrove (Avicennia germinans) population genetics with 12 nuclear microsatellite loci along three replicate coastlines in the United States (only two of three conform to underlying “abundant‐centre” assumptions). We then test an implicit prediction of CMH (reduced genetic diversity may constrain adaptation at range margins) by measuring functional traits of leaves associated with cold tolerance, the climatic factor that controls these mangrove distributional limits. CMH predictions were confirmed only along the coastlines that conform to “abundant‐centre” assumptions and, in contrast to theory, range margin A. germinans exhibited functional traits consistent with greater cold tolerance compared to range cores. These findings support previous accounts that CMH may not be a general rule across species and that reduced neutral genetic diversity at range margins may not be a constraint to shifts in functional trait variation along climatic gradients.     

Oligochaete drift in a large river (French Upper Rhône): the effect of life cycle and discharge

In the framework of a macroinvertebrate drift study, the oligochaete community was analysed over one year (1989) at six sites located in a partly impounded reach of the Upper Rhône River (France). Drift composition between sites was somewhat affected by the environmental conditions. These differences were caused by significant deviations in drift rates (P < 0.05) of endobenthic oligochaetes and non-swimming Naididae. There was no significant difference (P > 0.05) among the swimming Naididae. As the latter strongly dominated, global spatial differences in the drift were weak. Temporal changes constituted the main source of variability in drifting oligochaetes. Life cycles and reproductive ecology of four major swimming Naidid species, Nais elinguis, Stylaria lacustris, Nais christinae, and Nais barbata, explained most of the drift structure over the year. Hydrological fluctuations also affected drift structure, both for swimming and non-swimming species. Taxon richness and relative abundance in the drift were very similar to those obtained in the river benthos from a reference reach previously studied. There was a lack of stygobiont and stygophilous species that are frequent in area of groundwater seepage. Biological and environmental implications of oligochaete drift are stressed. The drift phenomenon is appropriated to provide ecological informations on oligochaete communities in fast flowing and deep, large rivers.