Counting Nematodes with a Microplate Reader

The feasibility of counting plant-parasitic nematodes in aqueous suspensions by measuring light transmittance through aqueous suspensions with an ELISA microplate reader was explored. Absorbance readings for eggs or vermiform stages of three species were linearly related (R² > 0.99) to concentrations between 0 and 10,000 nematodes/ml. Coefficients of variation ranged from 12-23%, depending on the species and developmental stage used. The method, therefore, was at least as accurate as direct counts of nematodes in aliquots on a microscope and more than 100 times as fast. The method should have direct application in research programs on plant resistance to nematodes, nematode population dynamics, and nematode behavior.     

The grasshopper X chromosome

The X chromosome can be identified with the light microscope throughout all stages of the gonial cell cycle (including interphase) in the grasshopper Brachystola magna. At gonial mitotic stages the X chromosome gives the appearance of being undercondensed or negatively heteropycnotic. At interphase the X projects out from the body of the nucleus. — Examination with the electron microscope reveals that the X is compartmentalized at least two gonial cell cycles prior to the entry of the cells into meiotic prophase. The membrane layers that envelope the X chromatin at interphase remain associated with the X chromosome throughout gonial mitotic stages providing the ultrastructural basis for the apparent negative heteropycnosis observed with the light microscope. — The X chromosome is inactive in RNA synthesis during gonial mitotic stages but is hyperactive in RNA synthesis when compared to autosomes at gonial interphase. — X chromosome condensation which reaches its maximum at premieotic interphase is initiated at or prior to the pre-pentultimate gonial division.     

Floral organogenesis of Potamogeton distinctus A. Benn. (Potamogetonaceae)

The floral organogenesis of Potamogeton distinctus A. Benn. was observed under the scanning electron microscope (SEM). The floral buds are first initiated on the lower portion of inflorescence in alternating whorls of three. Each of the floral buds is subtended by a bract primordium during the early stages. The primordia of the floral appendages arise on the floral bud acropetally. Two lateral tepals are first initiated and then two median ones soon after. Stamens are normally initiated as elongate primordia opposite the tepals, with the two lateral stamens preceding the median ones. The two carpel primordia arise alternating with the stamens. In some flowers, one of the two gynoecial primordia becomes inactive soon after they are initiated, or only one carpel primordium is initiated. The present observation of the gynoecial development supports the viewpoint that the evolution of flower in Potamogeton involves a reduction in number of parts. The existence of bract primordium during the early stages in many species of Potamogeton indicates that the absence of bractin mature flowers should be the result of reduction.     

The circle mode of replication of bacteriophage lambda: The role of covalently closed templates and the formation of mixed catenated dimers

This report presents evidence for the existence of two types of structural intermediates when λ DNA replicates as a circle. The first seems to consist of a partially replicated, covalently closed circle. The second was identified from a variety of properties, including electron microscope analysis after partial denaturation. It consists of a molecule with two interlocked rings, of which one is covalently closed and the other contains an interruption in one strand. A model for circle replication explaining how these structures might be related is presented.     

Reconstruction of long polynucleotide sequences from fragments using the Iskra-226 personal computer]

An algorithm for reconstructing long DNA sequences, i.e. arranging all overlapping gel readings in the contigs, and the corresponding BASIC programme for personal computer "Iskra-226" (USSR) are described. The contig construction begins with the search for all fragments overlapping the basic (longest) one follower by determination of coordinates of 5' ends of the overlapping fragments. Then the gel reading with minimal 5' end coordinate and the gel reading with maximal 3' end coordinate are selected and used as basic ones at the next assembly steps. The procedure is finished when no gel reading overlapping the basic one can be found. All gel readings entered the contig are ignored at the next steps of the assembly. Finally, one or several contigs consisted of DNA fragments are obtained. Effectiveness of the algorithm was tested on a model based on the multiple assembly of the nucleotide sequence, encoding the Na, K-ATPase alpha-subunit of pig kidney. The programme does not call for user's participation and can comprise contigs up to 10,000 nucleotides long.     

The floral development and floral anatomy ofChrysosplenium alternifolium, an unusal member of the Saxifragaceae

The floral development and anatomy ofChrysosplenium alternifolium were studied with the scanning electron microscope and light microscope to understand the initiation sequence of the floral organs and the morphology of the flower, and to find suitable floral characters to interpret the systematic position of the genus within the Saxifragaceae. The tetramerous flower shows a highly variable initiation sequence. The median sepals and first stamens arise in a paired sequence resembling a dimerous arrangement, but the first sepal and stamen arise on the side opposite to the bract. Transversal sepals and stamens emerge sequentially, as one side often precedes the other; sepals and stamens occasionally arise on common primordia. Initiation of the gynoecium is more constant with two median carpel primordia arising on a sunken floral apex. Several flowers were found to be pentamerous with a 2/5 initiation sequence. Flowers were invariably found to be apetalous without traces of petals in primordial stages; this condition is interpreted as an apomorphy. It is postulated that the development of a broad gynoecial nectary is responsible for the occurrence of an obdiplostemonous androecium. The gynoecium shows a number of anatomical particularities not observed in other Saxifragaceae. The presence and distribution of colleters is discussed.     

WHEN DID YOU FIRST BEGIN TO FEEL IT? — LOCATING THE BEGINNING OF HUMAN CONSCIOUSNESS

In this paper we attempt to sharpen and to provide an answer to the question of when human beings first become conscious. Since it is relatively uncontentious that a capacity for raw sensation precedes and underpins all more sophisticated mental capacities, our question is tantamount to asking when human beings first have experiences with sensational content. Two interconnected features of our argument are crucial. First, we argue that experiences with sensational content are supervenient on facts about electrical activity in the cerebral cortex which can be ascertained through EEG readings. Second, we isolate from other notions of a'functioning brain'that which is required to underpin the view that a cortex is functioning in a way which could give rise to rudimentary conscious experiences. We investigate the development in the human fetus of the anatomical and chemical pathways which underpin (immature) cortical activity and the growth and maturation of the electrical circuitry specifically associated with sensational content in adult experience. We conclude (tentatively) that a fetus becomes conscious at about 30 to 35 weeks after conception; an answer based on a careful analysis of EEG readings at various stages of cortical development. Finally, we survey the possible ethical ramifications of our answer.     

Bayesian detection of abnormal values in longitudinal biomarkers with an application to T/E ratio

We developed a test that compares sequential measurements of a biomarker against previous readings performed on the same individual. A probability mass function expresses prior information on interindividual variations of intraindividual parameters. Then, the model progressively integrates new readings to more accurately quantify the characteristics of the individual. This Bayesian framework generalizes the two main approaches currently used in forensic toxicology for the detection of abnormal values of a biomarker. The specificity is independent of the number n of previous test results, with a model that gradually evolves from population-derived limits when n = 0 to individual-based cutoff thresholds when n is large. We applied this model to detect abnormal values in an athlete's steroid profile characterized by the testosterone over epitestosterone (T/E) marker. A cross-validation procedure was used for the estimation of prior densities as well as model validation. The heightened sensitivity/specificity relation obtained on a large data set shows that longitudinal monitoring of an athlete's steroid profile may be used efficiently to detect the abuse of testosterone and its precursors in sports. Mild assumptions make the model interesting for other areas of forensic toxicology.     

A standard for calibration and shading correction of a fluorescence microscope

BACKGROUND: Numerous applications of fluorescence microscopy require quantitation of signal intensity in reproducible units. Two problems must be overcome to achieve this goal. First, due to various instrumental factors, the same sample imaged on two microscopes or even on the same microscope at different times may produce highly divergent readings. Second, because of shading, some areas within the same field may appear brighter than others despite the same amount of fluorophore. The first type of variability requires calibration using a sample of reproducible fluorescence yield; to correct for shading, a uniform fluorescent field is needed. METHODS: Standard slides were prepared by placing several microliters of 10%-50% w/v fluorescein or rhodamine between a coverglass and a slide. They were used to perform shading correction and normalization under a variety of imaging conditions. RESULTS: Concentrated fluorophores produced a uniform fluorescent field of moderate and reproducible brightness. By expressing the staining of a biological object in the units of standard slides, identical results were obtained irrespective of the imaging conditions or the microscope used. We compared shading correction based on concentrated fluorescein with two other standards. Concentrated fluorescein resulted in the best equalization of the field. CONCLUSIONS: Standardization of fluorescent images can be achieved by normalizing them to the image of a concentrated solution of a fluorophore. Due to its simplicity and efficiency, this method can be used in clinical analysis as well as in routine laboratory practice.     

The prophase stages in human foetal oocytes studied by light and electron microscopy

Summary The progression of the prophase stages of meiosis in human foetal ovaries is reported from a series of aborted foetuses spanning the first two trimesters of gestation. A surface-spreading technique allowed cells to be examined at both light and electron microscope levels. The pachytene stage was specifically examined for evidence of synaptic or other abnormalities. Two observations of interest are the relatively high incidence with which errors of pairing occur and second the state of thickening observed when such unpaired axes are stained with silver.     

Development of embryos from in vitro ovulated and fertilized oocytes of the quail (Coturnix coturnix japonica)

The development of quail embryos obtained after in vitro fertilization of oocytes ovulated in vitro was investigated. About 40% of the specimens, after 18-20 hr of incubation, had undergone cleavage to reach stages IV-VI when viewed under a stereo microscope. However, only 36% of these embryos contained normal, DAPI-stained nuclei when observed under a fluorescent microscope; the other 64% showing a morphologically normal cleavage pattern did not contain nuclei. Control unfertilized oocytes, ovulated in vitro and cultured for the same time, also sometimes attained the morphologically correct stages IV-VI but their "blastomeres" were always devoid of nuclei. Therefore, it is advisable to monitor early avian embryos for the presence of nuclei when assessing development in culture.The results demonstrate, for the first time, that cytoplasmic segmentation can occur in the absence of nuclear divisions in the germinal disc of the quail and show the existence and significance of ooplasmic maternal information in birds. This phenomenon is also known for sea urchin and frogs. It is indicative of the role of maternal information in early development. The in vitro method presented here links the steps of ovulation and fertilization with the early cleavage stages under in vitro conditions and may be useful in studying mechanisms of fertilization and differentiation in birds as well as in obtaining transgenic birds by DNA injection or application of foreign, DNA-carrying sperm.     

Complementary predation on metamorphosing species promotes stability in predator–prey systems

Functionally redundant predation and functionally complementary predation are both widespread phenomena in nature. Functional complementary predation can be found, for example, when predators feed on different life stages of their prey, while functional redundant predation occurs when different predators feed on all life stages of a shared prey. Both phenomena are common in nature, and the extent of differential life-stage predation depends mostly on prey life history; complementary predation is expected to be more common on metamorphosing prey species, while redundant predation is thought to be higher on non-metamorphosing species. We used an ordinary differential equation model to explore the effect of varying degree of complementary and redundant predation on the dynamic properties of a system with two predators that feed on an age-structured prey. Our main finding was that predation on one stage (adult or juvenile) resulted in a more stable system (i.e., it is stable for a wider range of parameters) compared to when the two predators mix the two prey developmental stages in their diet. Our results demonstrate that predator–prey dynamics depends strongly on predators' functionality when predator species richness is fixed. Results also suggest that systems with metamorphosing prey are expected to be more diverse compared to systems with non-metamorphosing prey.     

Chromatin activation of blood lymphocytes detected by polarization microscopy and cytophotometry

Blood lymphocytes exhibit chromatin activation upon incubation with substances to which a person is allergic. Chromatin activation can be detected by polarization microscopy. In this work, different methods of evaluating lymphocyte chromatin activation were compared in nine drug-allergic and in eight control subjects. All drug allergics had skin or mucosal involvement, ranging from localized minor herpetic lesions and purpurae through wheal and circumscribed bullous lesions to serum sickness as the most severe form. The mean path difference as the measure of nuclear birefringence was obtained by a polarization microscope using both white light and 551 +/- 7 nm monochromatic light. The equation of Brace-K?hler for converting compensation into path difference for each single cell was used in calculator programs. The values were compared with readings of a cytophotometer operated in transmission mode. Allergy "scores", deriving from the analysis of chromatin activation kinetics due to serial drug dilutions, were also compared using both methods. The results indicate a linear relationship between monochromatic and white light compensation readings and an exponential relationship between mean path difference and mean transmission values at different background amplifications. Operation of the photometer at 25.8% background amplification gave the best correlating results. The two methods gave identical results for the presence (ten tests) or absence (eight tests) of allergy.     

Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species

Precise identification of plant species requires a high level of knowledge by taxonomists and presence of reproductive material. This represents a major limitation for those working with seedlings and juveniles, which differ morphologically from adults and do not bear reproductive structures. Near-infrared spectroscopy (FT-NIR) has previously been shown to be effective in species discrimination of adult plants, so if young and adults have a similar spectral signature, discriminant functions based on FT-NIR spectra of adults can be used to identify leaves from young plants. We tested this with a sample of 419 plants in 13 Amazonian species from the genera Protium and Crepidospermum (Burseraceae). We obtained 12 spectral readings per plant, from adaxial and abaxial surfaces of dried leaves, and compared the rate of correct predictions of species with discriminant functions for different combinations of readings. We showed that the best models for predicting species in early developmental stages are those containing spectral data from both young and adult plants (98% correct predictions of external samples), but even using only adult spectra it is still possible to attain good levels of identification of young. We obtained an average of 75% correct identifications of young plants by discriminant equations based only on adults, when the most informative wavelengths were selected. Most species were accurately predicted (75–100% correct identifications), and only three had poor predictions (27–60%). These results were obtained despite the fact that spectra of young individuals were distinct from those of adults when species were analyzed individually. We concluded that FT-NIR has a high potential in the identification of species even at different ontogenetic stages, and that young plants can be identified based on spectra of adults with reasonable confidence.     

DNA analysis by flow cytometry

Accurate quantification of DNA from cells of several species is possible with flow cytometry. When one species is used as a reference, cytometric readings from two or more different species can be compared to obtain relative percent DNA or DNA indices. Differences in DNA from the male and female of the same species also can be measured. The method allows rapid screening of chromosomal abnormalities among large clinical populations, and evaluation of errors of sex determination such as XY sex reversal.     

Spontaneous and heat shock-induced irregularities in the cell structure of Didinium cf. nasutum

Deviations of the normal morphology and arrangement of the ciliary girdles and of the dorsal brushes of Didinium cf. nasutum are documented by SEM. Additionally, irregular fission stages such as symmetrical doublets which possess two parallel or antiparallel probosces are found in normal cultures. These ciliates are relatively long-lived (about one month). The didinia with oppositely oriented probosces feed continuosly on paramecia and produce normal cells which are indistinguishable from type-cells under a light microscope . Didinia with three or four probosces were not viable for longer than one to two weeks. All types of irregular forms could be induced experimentally by a 15-min exposure at 30 °C of cells cultured at 18 °C.     

Field Trial of a Microcolony Method for Testing the Antibiotic Sensitivity of Bacteria

The sensitivity of bacteria to antibiotics may be measured by a rapid method in which the criterion of sensitivity is inhibition of microcolony formation on agar which contains antibiotic. As this method allows a report on the antibiotic sensitivity of a pathogenic bacterium four hours after the test is set up, a trial of the method was carried out in a diagnostic laboratory. Two thousand five hundred and four strains of fast-growing bacteria were tested against 10 antibiotics. The overall correlation rate between the four-hour microscopic readings and the subsequent overnight readings on the same cultures was 98.1%. Seven per cent of the microscopical readings attempted gave indeterminate results, and reports on these tests were withheld until the following day.The time spent in making microscopical readings was considered fully justified by the fact that results of a high proportion of antibiotic sensitivity tests were available one day earlier than is usual with established methods.     

Microscope fluorometric investigations on the reticulocytic maturation distribution as diagnostic criterion of disordered erythropoiesis.

A microscope fluorometric technique is described which permits not only the visual identification of reticulocytes under the fluorescence microscope but also the determination of their relative stage of maturation to normocytes. The technique is based on a specific staining procedure which results in a fluorescent complex between the reticulocytic RNA and acridine orange. Thus, the relative mass of RNA in the individual reticulocytes can be measured by means of mciroscope fluorometry. As the reticulocytic RNA content decreases and finally disappears during the final maturation process of reticulocytes after their release into the peripheral blood stream, the fluorescence signal indicates the relative degree of this maturation. A characteristic frequency distribution of this parameter can be obtained for a given blood sample by microscope fluorometry measuring 200 to 300 reticulocytes. The preliminary use of this technique for following up the course of two cases of hemolytic anemia and one of pernicious megaloblastic anemia during their treatment demonstrates the potential diagnostic value of this technique of identifying the change of the reticulocyte maturation distribution in addition to the reticulocyte count. Satisfactory agreement between the microscope fluorometric results and those obtained by counting separately the four reticulocytic maturation stages according to Heilmeyer and Wesb?user has been achieved. The possibility of obtaining quantitative and comparable results by use of this method may be considered a general advantage and a promising basis for the development of an automated technique.     

Comparison of performance of various sphygmomanometers with intra-arterial blood-pressure readings.

Seven types of sphygmomanometer were used in random order on each of nine hypertensive patients and the readings compared with simultaneous intra-arterial blood-pressure recordings. All the devices gave significantly different values for systolic pressure, and only two measured diastolic pressure without significant error. Systolic pressure was consistently underestimated (range 31-7 mm Hg), and all but one instrument overestimated diastolic pressure (range 10-2 mm Hg). The variability of readings was least with the standard mercury sphygmomanometer and the random-zero machine, while with some of the more automated devices single readings were in error up to -68/33 mm Hg. The strong correlations found between intra-arterial and cuff systolic pressures with all devices tested and significant correlations for diastolic pressure with all but one device indicate that, with one possible exception, the sphygmomanometers would give accurate results where a change in blood pressure was the main concern.     

Adaptive peak shifts in a heterogenous environment

The problem of moving from one coadapted gene complex to a better one can be divided into two steps: first the advantageous combination has to appear and then it has to take over the population. Selection can have contrasting effects on the two stages. When selection is weak intermediate forms are frequent, and the advantageous combination appears easily. Spreading of that advantageous combination, on the other hand, tends to be hard, as recombination acts to break it. The opposite is true when selection is strong. Spreading is easier, but if selection is also strong against the intermediate forms, the appearance of the beneficial combination becomes an extremely rare event.This inherent contrast in the optimal conditions for the two stages raises the possibility that proximity of areas differing in the intensity of selection may significantly shorten the expected waiting time for a peak shift. We studied this phenomenon in a haploid two-locus diallelic model of two neighboring subpopulations. Our results show that limited migration between the two areas might shorten the waiting time for a peak shift by orders of magnitude in comparison with either complete isolation or complete mixing. Implications for peripheral evolution and speciation are discussed.