菠萝渣纤维素降解菌的筛选及鉴定

为了加快菠萝渣快速发酵,通过利用多种选择性培养基,从自然发酵的菠萝渣中分离到多种纤维素分解菌,经过初筛和复筛,获得了降解菠萝渣纤维素的菌株c3b1-3,其最适合的培养基为蛋白纤维素培养基;通过形态、生理生化特征和分子综合鉴定得出c3b1-3为金黄杆菌属（Chryseobacterium sp.）。     

更正

本刊2010年第6期刊登的贺军军、罗萍等文章"菠萝渣淀粉功能降解菌筛选及s2b7-4"及2011年第1期刊登的贺军军、罗萍等文章"甘蔗渣纤维素降解菌的筛选及鉴定",应作者本人要求,文中作者单位排序修改为"1.中国热带农业科学院湛江实验站;2.中国热带农业科学院环境与植物保护研究所;     

响应面法优化革耳Panus rudis FG-35菌株产漆酶培养基

采用Plackett-Burman设计和响应面分析相结合的方法,对革耳Panus rudis FG-35菌株产漆酶的液体培养基配方进行优化。单因素试验结果显示,发酵培养基中的最优碳源为可溶性淀粉,最优氮源为蛋白胨;Plackett-Burman设计筛选出影响漆酶产量的3个重要因素为可溶性淀粉、金属Ca2+离子和吐温-40,在此基础上运用最陡爬坡试验逼近最大响应值区域,最后利用Box-Behnken试验设计及响应面分析法进行回归分析,获得最佳培养基配方为:可溶性淀粉10.040 4 g/L、蛋白胨0.2 g/L、K2HPO41.00g/L、ZnSO4·7H2O 0.008 g/L、MgSO4·7H2O 0.5 g/L、CuSO4·7H2O 0.007 g/L、FeSO4·7H2O 0.005 g/L、MnSO40.035 g/L、CaCl20.0816 g/L、VB10.1 g/L、吐温-40 0.428%。在优化后的条件下摇瓶发酵产漆酶酶活力为263.31 U/mL,与模型预测值接近,发酵产酶量比优化前提高1.07倍,同时优化后的发酵液对木质素降解进行试验发现,优化后漆酶对木质素降解率提高了14.34%。     

以脂肪酶为指标筛选赤霉素高产菌株的研究

以藤仓赤霉菌978对978#菌丝机械断裂后,采用紫外(30W,20cm)诱变处理60s,以脂肪酶活性为初筛指标筛选得到4株产赤霉素效价比出发菌株高的突变株,其中菌株GL-2在添加3%豆油的发酵培养基中产赤霉素能力比菌株978#在全淀粉发酵培养基发酵产素能力提高了1.2倍.调整补油工艺后,菌株GL-2产素能力进一步提高到...     

解淀粉芽孢杆菌MN-8对玉米秸秆木质纤维素的降解

微生物降解木质纤维素既是生物质资源化利用中的关键问题,也是亟需解决的难点问题.本文在前期获得木质素降解菌——解淀粉芽孢杆菌MN-8菌株的基础上,进一步研究该菌株对玉米秸秆木质纤维素的降解作用.研究利用玉米秸秆粉-MSM培养基对MN-8菌株进行固态发酵,监测发酵过程中木质纤维素酶活力和木质纤维素含量变化情况,并通过傅立叶红外光谱(FTIR)和气质联用色谱(GC/MS)对木质纤维素的降解情况及产物进行分析.结果表明:解淀粉芽孢杆菌MN-8菌株可产生木质素过氧化物酶、锰过氧化物酶、纤维素酶和半纤维素酶等木质纤维素降解酶,在发酵10～16 d陆续达到酶活力峰值,最高酶活力分别为55.0、16.7、45.4和60.5 U·g-1.发酵24 d后,玉米秸秆中木质素、纤维素和半纤维素的降解率可分别达到42.9％、40.6％和27.1％.FTIR光谱数据表明,玉米秸秆发酵后木质素、纤维素和半纤维素的特征吸收峰强度均有一定程度的下降,表明木质纤维素被部分降解.GC/MS分析结果也证实,解淀粉芽孢杆菌MN-8能有效降解秸秆木质纤维素.MN-8菌株可断裂玉米秸秆木质素单体之间的连接键β-O-4,将秸秆木质素解聚为苯丙胺、苯丙酮和苯丙酸等保留木质素苯丙烷结构的单体化合物,并将部分单体化合物进一步氧化为Cα羰基化合物,如2-氨基-1-苯丙酮和紫丁香基苯乙酮等.在对纤维素和半纤维素降解产物的GC/MS分析中发现,降解产物包含葡萄糖、甘露糖和半乳糖等多种单糖化合物以及甲酸、乙酸、丙酸、1,1-乙二醇和3-羟基丁酸等代谢产物.表明解淀粉芽孢杆菌MN-8对秸秆木质纤维素表现出强降解作用,且该作用依赖于菌株产木质纤维素降解酶的能力.     

淡色生赤壳菌(Bionectria ochroleuca)Bo-1菌株产生抗菌物质的发酵条件优化

以淡色生赤壳菌(Bionectria ochroleuca)Bo-1菌株发酵液乙酸乙酯粗提物对水稻白叶枯病菌(Xanthomonas oryzaepv.oryzae,Xoo)抑菌活性为检测指标,采用单因素试验优化Bo-1菌株产生抗菌物质培养所需的碳源、氮源、无机盐;通过正交试验优化培养基配方和摇瓶发酵条件。研究结果表明,Bo-1菌株产生抗菌物质适宜的碳源、氮源和无机盐分别为淀粉、蛋白胨、MgSO4·7H2O;优化的培养基配方为:淀粉30 g/L,蛋白胨2 g/L,MgSO4·7H2O 0.5 g/L;适宜的发酵条件为:温度30℃,转速150 r/min,装液量80 mL/250 mL,pH 6.5。     

甘蔗渣纤维素降解菌的筛选及鉴定

通过利用多种选择性培养基,从自然发酵不同阶段的甘蔗渣中分离到多种纤维素分解菌,经过初筛和复筛,获得了降解纤维素的功能菌株c1g3-3及其最适功能培养基蛋白胨纤维素培养基（PCS）,并通过形态、生理生化和分子综合鉴定得出c1g3-3鉴定为木糖氧化无色杆菌（Achrom obacter xylosoxidans）。     

降解菜籽饼粗蛋白耐盐菌的筛选、鉴定及固体发酵的初步研究

从保存6个月含菜籽饼的堆肥样品中筛选到3株耐盐菌株A2、A4、A7,这些菌株能以菜籽饼为氮源生长,最高耐盐浓度达到10%,经分子生物学及系统发育分析,A2、A4为解淀粉芽孢杆菌,A7为栗褐芽孢杆菌,通过单一菌株固体发酵菜籽饼试验,这些细菌均对菜籽饼表现出了一定的降解能力。     

一株产生淀粉酶杆菌Bacillus sp. GEL-09的筛选、鉴定及发酵条件优化

【背景】生淀粉酶可以水解生淀粉颗粒,在酒精发酵、白酒、黄酒和食醋的生料酿造工业中具有广阔的应用前景。【目的】从自然环境中筛选产生淀粉酶的菌,对其发酵条件及酶性能进行考察,为淀粉生料发酵过程提供优良菌种和酶资源。【方法】取木薯田土壤,经过稀释、热处理、富集培养以及木薯淀粉平板筛选培养基初筛,摇瓶复筛得到产高效降解生淀粉酶的菌株;经过菌落形态、细胞染色观察以及16S rRNA基因序列比对进行鉴定;对筛选菌株的发酵培养基和发酵条件进行优化,并对酶蛋白进行分离纯化和酶学性质分析。【结果】分离到一株具有较高生淀粉酶水解活力的菌株GEL-09,经鉴定为芽胞杆菌Bacillus sp.GEL-09;该菌在最优发酵条件下培养96 h,胞外酶活力达到430.6 U/m L,是优化前的2.8倍;酶学性质分析发现该酶为中温、中性酶,最适温度和p H为50°C和7.0;生淀粉降解能力对比发现,该酶的生淀粉降解能力值为62.3%,显著高于细菌α-淀粉酶、生麦芽糖淀粉酶和甘薯β-淀粉酶对生淀粉的降解能力。【结论】Bacillus sp.GEL-09在生淀粉酶生产方面具有良好的开发应用前景。     

发酵床中纤维素降解菌的分离与鉴定

从发酵床垫料中初步分离出43株纤维素降解菌。采用刚果红鉴别培养基及滤纸条培养基初筛,得到5株透明圈较大且使滤纸条产生崩解的菌株,通过进一步液体发酵,测定其CMC酶活、FPA酶活和天然纤维素酶活,获得2株具有较高纤维素降解活性菌株,并分别命名为F7和F21。经16S rRNA基因序列分子生物学鉴定和系统发育分析表明,这2株纤维素降解菌分别归属为枯草芽孢杆菌(Bacillus subtilis)和链霉菌(Streptomyces sp.)。     

Production of phenolic antioxidants by the solid-state bioconversion of pineapple waste mixed with soy flour using Rhizopus oligosporus

The ability of Rhizopus oligosporus to produce enhanced levels of free phenolics from pineapple residue mixed with soy flour as potential nitrogen source was investigated. Concurrently, phenolic-linked β-glucosidase and the antioxidant activity of the extracts were followed. Two treatments were studied: (A) 9 g of pineapple residue and 1 g of soy flour (P9); (B) 5 g of pineapple residue and 5 g of soy flour (P5). The increase of water extractable phenolics was 39.3% for P9 treatment and 79.4% for P5 treatment. During early stages of growth high antioxidant activity, low phenolic content and low β-glucosidase specific activity was observed. High antioxidant activity was likely due to the presence of insoluble polymeric phenolics, know for their high antioxidant activity. A marked decrease of the antioxidant activity of P5 treatment during late stages of growth was observed due to likely formation of free soluble phenolics. The moderate total phenolics content and high β-glucosidase specific activity of P9 treatment in late stages is likely the consequence of low nitrogen content in this treatment. The bioconversion of pineapple residue by R. oligosporus leads to enhanced levels of phenolic compounds, mainly for P5 treatment. This approach offers a novel strategy to enhance the value of pineapple wastes.     

Isoform specific phosphorylation of protein phosphatase 2C expressed in COS7 cells

Of the six distinct isoforms of mouse protein phosphatase 2C (PP2C) (α, β-1, β-2, β-3, β-4 and β-5), PP2Cα was specifically phosphorylated on the serine residue(s) when expressed in COS7 cells. Analysis of phosphorylation sites using site-directed mutagenesis demonstrated that Ser-375 and/or Ser-377 were phosphorylated in vivo. These serine residues were the sites of phosphorylation by casein kinase II in vitro. Phosphorylation of PP2Cα was enhanced two-fold by the addition of okadaic acid to the culture medium, but addition of cyclosporin A had no such effect. These results suggest that the expressed PP2Cα is phosphorylated by a casein kinase II-like protein kinase and dephosphorylated by PP1 and/or PP2A in COS7 cells.     

The structures of the lipopolysaccharide core components from Rhizobium leguminosarum biovar phaseoli CE3 and two of its symbiotic mutants, CE109 and CE309

The structures for the core regions of the lipopolysaccharides (LPSs) from R. leguminosarum bv. phaseoli CE3 and two symbiotic mutants were determined by g.l.c.-m.s., proton nuclear magnetic resonance spectroscopy (n.m.r.), fast-atom-bombardment mass spectrometry (f.a.b.-m.s.), and by comparison with known structures from the LPS of R. leguminosarum bv. trifolii ANU843. The core oligosaccharides were separated into two components, P2-2 and P2-3, by gel-filtration chromatography using Bio-Gel P2. The P2-2 oligosaccharide from CE3 is a tetrasaccharide consisting of 3-deoxy-D-manno-2-octulosonic acid (Kdo), mannose, galactose and galacturonic acid. The mannosyl residue is alpha-linked to O-4 of Kdo, and the galactosyl and galactosyluronic residues are alpha-linked to O-4 and O-6, respectively, of the mannosyl residue. The P2-2 oligosaccharide from mutant CE109 is missing the galactosyluronic residue, while that from mutant CE309 is missing both the galactosyl and galactosyluronic residues. The P2-3 oligosaccharide from CE3 LPS is a trisaccharide consisting of two galactosyluronic residues alpha-linked to the O-4 and O-7 of Kdo. Fraction P2-3 from mutant CE309 has the same structure as CE3 P2-3. Fraction P2-3 from mutant CE109 contains galacturonic acid and Kdo, but its structure differs from that of CE3 P2-3.     

Further optimization of sulfonamide analogs as EP1 receptor antagonists: synthesis and evaluation of bioisosteres for the carboxylic acid group

4-{[2-[(2-Furylsulfonyl)(isobutyl)amino]-5-(trifluoromethyl)phenoxy]methyl}benzoic acid analogs 2a and b and a series of the acid analogs, in which the carboxylic acid residue of 2b was replaced with various kinds of carboxylic acid bioisosteres, were synthesized and evaluated as EP1 receptor antagonists. Compound 2b and its monocyclic acid analogs, in which the carboxylic acid residue of 2b was replaced with monocyclic acid bioisosteres, were found to show potent EP1 receptor antagonist activity. Optimization of the linker Y between the phenyl moiety and the carboxylic acid residue of 2b was also carried out (Table 5). Compounds 2b and 16 and 17 possessing conformationally restricted linker Y were found to show the most optimized potency among the tested compounds. Cytochrome P450 inhibition of optimized compounds was also investigated. Details of the structure-activity relationship study are presented.     

Direct electrochemistry of engineered cytochrome b562 molecules with a ligand binding pocket

The rapid and reversible electron transfer reaction of cytochrome b562 was observed at an In2O3 electrode. The estimated heterogeneous electron transfer rate constant (k0') was k0' > or = 5.0 x 10(-3) cm s(-1) at pH 6.5. When the methionine-7 (Met-7) residue, which coordinates to the heme iron as an axial ligand, of the wild-type cytochrome b562 was replaced by an Ala or Gly residue, a water molecule bound to the heme iron and the electron transfer rate constants decreased to 1.3 x 10(-3) and 1.8 x 10(-3) cm s(-1), respectively. This decrease in the electron transfer rate would be due to the larger reorganization energy for the structural change at the redox site. The midpoint potential of cytochrome b562 was shifted negatively by approximately 135 mV by replacing Met-7 with Ala or Gly. Similar dissociation kinetics of cyanide for the mutated molecules as compared to native myoglobin was obtained.     

林业剩余物资源量评估所用系数的定义和取值

有机废弃物是重要的待开发利用的生物质资源,特别是发展生物炼制。文中针对林业剩余物第二级分类的全部10个类型,根据1993–2017年间报道的有关林业剩余物系数研究,首先在前人研究结果的基础上,完善了系数体系及其定义。然后,对以前的取值通过文献溯源甄别其合理性,对于没有明确依据的取值和迄今未取值的系数,通过相关研究获得数据并进行实地调研,确定了计算林木苗圃剩余物、林木修枝剩余物、木材采伐剩余物、木材造材剩余物、木材加工剩余物、竹材加工剩余物、薪材、废旧竹材和废旧木材、香蕉和菠萝残体所需系数的合理取值。     

Synthesis of 1,1-difluoro-5-(1H-9-purinyl)-2-pentenylphosphonic acids and the related methano analogues. Remarkable effect of the nucleobases and the cyclopropane rings on inhibitory activity toward purine nucleoside phosphorylase

A series of 1,1-difluoro-5-(1H-9-purinyl)-2-pentenylphosphonic acids, (E)-2a,b and (Z)-2a,b, as well as the related methano analogues (±)-3a,b and (±)-4a,b were prepared for evaluation of their PNP inhibitory activities. The cyclopopane ring and the hypoxanthine residue were found to increase the profile of inhibitory activity. The IC₅₀ and K_i values of difluoro{(1R*,2S*)-2-[2-(6-oxo-6,9-dihydro-1H9-purinyl)ethyl]cyclopropyl}methylphosphonic acid (±)-3b toward PNP purified from Cellulomonas sp. were determined to be 70 nM and 8.8nM, respectively.     

Mutation of fungal endoglucanases into glycosynthases and characterization of their acceptor substrate specificity

Humicola insolens mutant Cel7B E197A is a powerful endo-glycosynthase displaying an acceptor substrate specificity restricted to β-d-glucosyl, β-d-xylosyl, β-d-mannosyl and β-d-glucosaminyl in +1 subsite. Our aim was to extend this substrate specificity to β-d-N-acetylglucosaminyl, in order to get access to a wider array of oligosaccharidic structures obtained through glycosynthase assisted synthesis. In a first approach a trisaccharide bearing a β-d-N-acetylglucosaminyl residue was docked at the +1 subsite of H. insolens Cel7B, indicating that the mutation of only one residue, His209, could lead to the expected wider acceptor specificity. Three H. insolens Cel7B glycosynthase mutants (H209A, H209G and H209A/A211T) were produced and expressed in Aspergillus oryzae. In parallel, sequence alignment investigations showed that several cellulases from family GH7 display an alanine residue instead of histidine at position 209. Amongst them, Trichoderma reesei Cel7B, an endoglucanase sharing the highest degree of sequence identity with Humicola Cel7B, was found to naturally accept a β-d-N-acetylglucosaminyl residue at +1 subsite. The T. reesei Cel7B mutant nucleophile E196A was produced and expressed in Saccharomyces cerevisiae, and its activity as glycosynthase, together with the H. insolens glycosynthase mutants, was evaluated toward various glycosidic acceptors.     

Oligonucleotides incorporating 7-(aminoalkynyl)-7-deaza-2'-deoxyguanosines: duplex stability and phosphodiester hydrolysis by exonucleases

Oligonucleotides containing 7-(omega-aminoalkyn-1-yl)-7-deaza-2'-deoxyguanosines (1a-c) were investigated regarding their thermal stability (T(m) values) as well as their phosphodiester hydrolysis catalyzed by exonucleases. Those derivatives are suitable for the labeling of nucleic acid constituents as well as for the postlabeling of DNA. For this, the phosphoramidites 7a,c (obtained from the nucleoside 1a,b), protected by an isobutyryl group at the 2-amino group and a phthaloyl residue at the side-chain amino function, were synthesized. Using compounds 7a,c together with the phosphoramidite of 1c in solid-phase synthesis, a series of self-complementary and non-self-complementary oligonucleotides were prepared and characterized by MALDI-TOF mass spectrometry. A comparison of the T(m) values of the modified oligomers shows that the thermal stability of the duplexes decreases with the length of the nucleobase 7-(omega-aminoalkyn-1-yl) side chain. Exonucleolytic cleavage of oligonucleotide single strands incorporating either the 7-(3-aminopropyn-1-yl)- or the 7-(4-aminobutyn-1-yl)-substituted nucleosides 1a or 1b, respectively, reveals that 3' --> 5' specific snake venom phosphodiesterase liberates 1a 5'-monophosphate but not the methylene-extended 1b 5'-monophosphate. On the contrary, the 5' --> 3' specific bovine spleen exonuclease is able to cleave off single 1a and 1b 3'-monophosphate residues; its action is, however, terminated in the case of oligonucleotides containing two consecutive 1a or 1b nucleotide units.