The kinetics of periodate oxidation of carbohydrates: a calorimetric approach

A calorimetric approach is described for analysing the kinetics of periodate oxidation on a series of monosaccharidic substrates. Rate constants at several temperatures were calculated from the calorimetric decay curves that are proportional to the rate of conversion. Arrhenius plots provided the activation parameters for the various carbohydrates and a linear correlation was found between the values of enthalpy and entropy of activation. The dependence of the values of kinetic rates on stereochemistry is interpreted in terms of conformational probability of the reactive state. The suitability of the calorimetric method to track the kinetic process of slow reactions is emphasised, in particular its ability to monitor, directly and continuously, the course of the reaction.     

Kinetic evidence for hemiacetal formation during the oxidation of dextran in aqueous periodate

A kinetic analysis is described of the periodate oxidation of a dextran in which all the 93% of oxidisable D-glucose residues contained a 2,3,4-triol system. Measurements were made of the periodate consumed and the formic acid liberated by the dextran, the periodate consumed and the formaldehyde liberated by samples that had been partially oxidised and then reduced with sodium borohydride, and the glycerol and erythritol released from these samples by acid hydrolysis. Initially, the oxidisable D-glucose residues decayed according to second-order kinetics. After the first oxidative attack, ~ 40% of the singly oxidised residues very rapidly consumed a second mole of periodate, while the remainder consumed further periodate at about one-seventh of the rate of an intact D-glucose residue. Residues cleaved between positions 3 and 4 were generated 7.5 times faster than residues cleaved between positions 2 and 3, but the two kinds of singly oxidised residue subsequently decayed at similar rates. Towards the end of their reaction, the rate of decay of intact, oxidisable D-glucose residues declined in a way that was simply correlated with the proportion of doubly oxidised residues in the chains. A simple scheme is presented that explains these facts in terms of intra-residual hemiacetal formation by singly oxidised residues, and inter-residual hemiacetal formation between doubly oxidised residues and intact D-glucose residues adjacent to them in the chains.     

Specific inhibition of glucosyltransferase of Streptococcus mutans

Clinical dextran, partially oxidized with sodium periodate, acts as a potent inhibitor of the extracellular glucosyltransferases of several cariogenic strains of oral Streptococcus mutans. Preincubation with oxidized dextran resulted in a rapid loss of up to 80% of the ability of the enzyme preparation to synthesize polysaccharide from sucrose, but there was no loss of enzyme activity when the oxidized dextrans were reduced with sodium borohydride before preincubation with enzyme. The presence of unoxidized clinical dextran during the preincubation period afforded the enzymes protection against inhibition by partially-oxidized dextran, but clinical dextran did not readily restore activity when it was added after incubation of the enzyme with oxidized polysaccharide. Fructosyltransferase, and glycogen and starch phosphorylase, activities were not inhibited by oxidized dextran, and the bacterial glucosyltransferases were not inhibited by partially oxidized glycogen and amylose. It is proposed that the potent and specific inhibition of glucosyltransferase by oxidized dextran results from the interaction of dialdehyde groups with reactive functional groups close to the dextran-binding site of the enzyme.     

How does dextran sulfate prevent heat induced aggregation of protein? The mechanism and its limitation as aggregation inhibitor

The effect of dextran sulfate on protein aggregation was investigated to provide the clues of its biochemical mechanism. The interaction between dextran sulfate and BSA varied with the pH values of the solution, which led to the different extent of aggregation prevention by dextran sulfate. Light scattering data with thermal scan showed that dextran sulfate suppressed BSA aggregation at pH 5.1 and pH 6.2, while it had no effect at pH 7.5. Isothermal titration calorimetric analysis suggested that the pH dependency of the role of dextran sulfate on BSA aggregation would be related to the difference in the mode of BSA-dextran sulfate complex formation. Isothermal titration calorimetric analysis at pH 6.2 indicated that dextran sulfate did not bind to native BSA at this pH, but interacted with partially unfolded BSA. While stabilizing native form of protein by the complex formation has been suggested as the suitable mechanism of preventing aggregation, our observation of conformational changes by circular dichroism spectroscopy showed that strong electrostatic interaction between dextran sulfate and BSA rather facilitated the denaturation of BSA. Combining the data from isothermal titration calorimetry, circular dichroism, and dynamic light scattering, we found that the complex formation of the intermediate state of denatured BSA with dextran sulfate is a prerequisite to suppress the aggregation by preventing further oligomerization/aggregation process of denatured protein.     

Inhibition of trypsin and chymotrypsin by thiols. Biphasic kinetics of reactivation and inhibition induced by sodium periodate addition.

Biphasic kinetic data were obtained when trypsin (EC 3.4.21.4) which had previously been complexed with a thiol-containing inhibitor (present in Ehrlich ascites tumour cells) was incubated with incremental additions of periodate. At low concentrations of periodate the trypsin was re-activated whilst at higher concentrations of periodate the trypsin was irreversibly inhibited. This biphasic reactivation followed by inhibition was also demonstrated when trypsin was first inhibited by dithiothreitol and followed by incremental addition of periodate. Similar results were obtained with chymotrypsin (EC 3.4.21.1). Incremental additions of either dithiothreitol or periodate caused inhibition of both these enzymes. The biphasic kinetic data can be explained in terms of reduction and oxidation of a significant disulphide bond in both trypsin and chymotrypsin which can be cleaved by thiols in a disulphide exchange reaction [1]. This bond is thought to maintain the active centres of each of these enzymes in a conformation sterically favourable for enzymic cleavage of specific peptide bonds in the protein substrates (polymeric collagen fibrils and casein) employed in this study.     

Kinetic studies on dextransucrase from the cariogenic oral bacterium Streptococcus mutans

The kinetic mechanism of dextransucrase was studied using the Streptococcus mutans enzyme purified by affinity chromatography to a specific activity of 36.9 mumol/min/mg of enzyme. In addition to dextran synthesis, the enzyme catalyzed sucrose hydrolysis and isotope exchange between fructose and sucrose. The rates of sucrose hydrolysis and dextran synthesis were partitioned as a function of dextran concentration such that exclusive sucrose hydrolysis was observed in the absence of dextran and exclusive dextran synthesis at high dextran concentrations. An analogous situation was observed with fructose-dependent partitioning of sucrose hydrolysis and fructose exchange. Steady state dextran synthesis and fructose isotope exchange kinetics were simplified by assay at dextran or fructose concentrations high enough to eliminate significant contributions from sucrose hydrolysis. This limited dextran synthesis assays to dextran concentrations above apparent saturation. The limitation was diminished by establishing conditions in which the enzyme does not distinguish between dextran as a substrate and product which allowed initial discrimination among mechanisms on the basis of the presence or absence of dextran substrate inhibition. No inhibition was observed, which excluded ping-pong and all but three common sequential mechanisms. Patterns of initial velocity fructose production inhibition and fructose isotope exchange at equilibrium were consistent with dextran synthesis proceeding by a rapid equilibrium random mechanism. A nonsequential segment was apparent in the exchange reaction between fructose and sucrose assayed in the absence of dextran. However, the absence of detectable glucosyl exchange between dextrans and the lack of steady state dextran substrate inhibition indicate that glucosyl transfer to dextran must occur almost exclusively through the sequential route. A review of the kinetic constants from steady state dextran synthesis, fructose product inhibition, and fructose isotope exchange showed a consistency in constants derived from each reaction and revealed that dextran binding increases the affinity of sucrose and fructose for dextransucrase.     

A novel affinity-based controlled release system involving derivatives of dextran with enhanced osmotic activity

Dextran is a highly biocompatible molecule with osmotic activity. We synthesized histidine derivatives of dextran, DexH (dextran histidine), to test the feasibility of an IMAC-based controlled release system. DexH was synthesized by the periodate oxidation method. The effect of periodate oxidation and histidine conjugation on osmotic activity was tested. The oxidized intermediate itself exhibited higher osmotic activity than native dextran. Conjugation with histidine further increased the osmotic activity, and the resulting DexH exhibited nine times more osmotic activity than native dextran. A positive correlation was observed between the extent of derivatization with histidine and osmotic activity. Association of DexH was tested on two of the matrices, namely, Cu-IDA-Novarose and Zn-IDA-Novarose. DexH bound to both these matrices, and only partial elution was achieved with stepwise lowering of pH, and complete elution was possible only with EDTA. Interestingly, it was found that DexH in its bound state (DexH-Cu-IDA-Novarose and DexH-Zn-IDA-Novarose) exhibited lesser osmotic activity than the eluted soluble form. The IDA-Cu and IDA-Zn-based solid supports bound strongly to DexH in a species-dependent manner, as the IDA-Zn matrix selectively bound DexH with clustered histidine. Further, this DexH with clustered histidine shows higher osmotic activity. A controlled release system is proposed on the basis of this difference in the osmotic activity between the bound and eluted forms of DexH with EDTA as the external trigger to induce this transition in osmotic activity.     

An investigation of the thermal unfolding of swine pepsinogen using circular dichroism.

The thermal unfolding of swine pepsinogen is investigated using circular dichroism (CD) in the pH range 6-9. CD spectra and single wavelength melting curves are analyzed to show the presence of two resolvable transitions. Analysis of difference CD spectra by the method of singular value decomposition indicates that the changes in conformation are distinct in the two transitions. Single wavelength melting curves show that only one of the transitions has a strong pH dependence. The results are discussed in terms of earlier kinetic and calorimetric data to suggest the presence of one or more intermediates in the reaction.     

A model for the behaviour of phosphorylase b. The generation of different binding sites via intermediate enzymatic states.

The model given in this paper can be applied to enzymatic systems which have more than two conformational states in equilibrium and which clearly exhibit heterogeneity in the binding of one ligand. The model we propose makes possible quantitative interpretation of our experimental results and of those of many other workers as well. In some cases calorimetric, dialysis and kinetic magnitudes, when plotted against ligand concentration, give multiregional or "stepwise" curves. We suggest that such a behaviour arises because total occupation of one class of binding sites completely moves the enzyme towards a different conformational state in which the affinity for the ligand is greatly increased by the formation of a new class of binding sites. Our calorimetric results for the interaction between some nucleotides and phosphorylase b closely conform to our model.     

Interaction of ovomucoid from duck egg proteins with aldehydes-dextrans]

The interaction of ovomucoid proteinase inhibitor prepared from duck egg white with a dextran of a molecular weight of 70,000 preliminary treated with potassium periodate. Irrespective of the number of the sites of the ovomucoid binding to aldehyde-dextran the anti-chymotryptic activity is equal to that of the native inhibitor, while the antitryptic activity decreases proportionally to the number of ovomucoid amino groups involved in the reaction with dextran. When a few ovomucoid molecules are immobilized on the polysaccharide macromolecule the perturbing effect of the protein-protein interactions is minimal, as the rigid polymeric chain prevents from the formation of associates of proteins immobilized on this backbone.     

Preparation of fluorescein-labelled and biotinylated derivatives of polysaccharides for lectin-saccharide binding studies

Fluorescein- and biotin-labelled polysaccharides were prepared using ethylene diamine coupled to a polysaccharide either by carbodiimide reaction to carboxyl group or after periodate oxidation of saccharide residue and the derivative was used for labelling. Labelled hyaluronic acid, chondroitin sulfate and dextran sulfate were prepared.     

Immunochemical studies of dextran coupled ragweed pollen allergen, antigen E.

The major allergen of ragweed pollen antigen E has been coupled to periodate oxidized dextrans, followed with sodium borohydride reduction to stabilize the linkages. Two products having molecular weights of about 100,000 and 140,000 were prepared, and the molar ratio of dextran to antigen E in both products was the same in the range of 2–5. The antigenic and the allergenic activities of the products were on a molar basis about seven to eight fold less than those of antigen E. On dextranase digestion of the products, their biological activities were restored. The products were immunogenic in rabbits to stimulate the formation of antibodies reacting with antigen E and with dextran.     

The effect of macrofixation on derepressed sugar transport systems of chick embryo fibroblasts

The large molecular weight polyaldehyde (macrofixative) obtained by periodate oxidation of dextran has been shown to react with the external cell surface. Chick embryo fibroblasts (CEF), which had been treated with macrofixative (MFx), were examined for the effect on the rates of sugar transport. The low “basal” rate of sugar uptake, seen in confluent (high density) cultures of CEF was unaffected by such treatment. Low density (rapidly growing) cultures, oncogenically transformed cultures, and glucose-starved cultures have rates of sugar uptake that are significantly higher than the “basal” level. Macrofixation was found to inhibit the induction of higher rate of glucose transport under all of these conditions. The results indicate that a difference may exist between the sugar transport system in resting (confluent) cells, and that in “derepressed” cells.     

Quantitative evaluation of antibacterial activities of metallic oxide powders (ZnO,MgO and CaO) by conductimetric assay

Antibacterial activities of metallic oxide (ZnO, MgO and CaO) powders against Staphylococcus aureus and Escherichia coli were quantitatively evaluated by measuring the change in electrical conductivity of the growth medium caused by bacterial metabolism (conductimetric assay). The obtained conductivity curves were analyzed using the growth inhibition kinetic model proposed by Takahashi for calorimetric evaluation, and the metallic oxides were determined for the antibacterial efficacy and kinetic parameters. The parameters provide some useful indicators for antimicrobial agents, such as the dependence of antibacterial activity on agent concentration, and the affinity between the agent and the bacterial cells. CaO was the most effective, followed by MgO and ZnO, against E. coli. On the other hand, ZnO was the most effective for S. aureus and was suggested to have a strong affinity to the cells of S. aureus.     

Comparative differential scanning calorimetric analysis of vegetable oils: I. Effects of heating rate variation

The melting curves of 11 vegetable oils have been characterised. Vegetable oil samples that were cooled at a constant rate (5 degrees C/min) from the melt showed between one and seven melting endotherms upon heating at four different heating rates (1, 5, 10 and 20 degrees C/min) in a differential scanning calorimeter (DSC). Triacylglycerol (TAG) profiles and iodine value analyses were used to complement the DSC data. Generally, the melting transition temperature shifted to higher values with increased rates of heating. The breadth of the melting endotherm and the area under the melting peak also increased with increasing heating rate. Although the number of endothermic peaks was dependent on heating rate, the melting curves of the oil samples were not straightforward in that there was no correlation between the number of endothermic peaks and heating rates. Multiple melting behaviour in DSC experiments with different heating rates could be explained by: (1) the melting of TAG populations with different melting points; and (2) TAG crystal reorganisation effects. On the basis of the corollary results obtained, vegetable oils and fats may be distinguished from their offset-temperature (Toff) values in the DSC melting curves. The results showed that Toff values of all oil samples were significantly (p < 0.01) different in the melting curves scanned at four different scanning rates. These calorimetric results indicate that DSC is a valuable technique for studying vegetable oils.     

Increased Bacterial Uptake of Macromolecular Substrates with Fluid Shear

To investigate the effect of fluid shear on uptake rates of low-diffusivity macromolecular substrates by suspended cultures, we measured the uptake of two compounds as models of macromolecules, a protein (bovine serum albumin [BSA]) and a polysaccharide (dextran), using pure cultures of Zoogloea ramigera and Escherichia coli, respectively. Oxygen utilization rates of stirred samples grown on BSA and dextran were 2.3 and 2.9 times higher, respectively, than those of undisturbed (still) samples. Uptake rates of ³H-BSA and [³H]dextran by stirred samples were 12.6 and 6.2 times higher, respectively, than those by still samples. These experimentally obtained increases are larger than those predicted with a mass transfer model. Model results indicated that stirring would increase uptake by factors of 1.6 and 1.8 for BSA and dextran. As predicted by the model, we also found that uptake rates of low-molecular-weight substrates with high diffusivities, such as leucine and glucose, were only slightly affected by fluid shear. Since macromolecules can make up a major portion of bacterial substrate in natural, laboratory, and engineered systems, the demonstrated effect of fluid shear has wide implications for kinetic studies performed in basic metabolic research as well as in the evaluation of engineered bioreactors used for wastewater treatment.     

Scan-rate dependence in protein calorimetry: the reversible transitions of Bacillus circulans xylanase and a disulfide-bridge mutant.

The stabilities of Bacillus circulans xylanase and a disulfide-bridge-containing mutant (S100C/N148C) were investigated by differential scanning calorimetry (DSC) and thermal inactivation kinetics. The thermal denaturation of both proteins was found to be irreversible, and the apparent transition temperatures showed a considerable dependence upon scanning rate. In the presence of low (nondenaturing) concentrations of urea, calorimetric transitions were observed for both proteins in the second heating cycle, indicating reversible denaturation occurs under those conditions. However, even for these reversible processes, the DSC curves for the wild-type protein showed a scan-rate dependence that was similar to that in the absence of urea. Calorimetric thermograms for the disulfide mutant were significantly less scan-rate dependent in the presence of urea than in the urea-free buffer. The present data show that, just as for irreversible transitions, the apparent transition temperature for the reversible denaturation of proteins can be scan-rate dependent, confirming the prediction of Lepock et al. (Lepock JR, Rithcie KP, Kolios MC, Rodahl AM, Heinz KA, Kruuf J, 1992, Biochemistry 31:12706-12712). The kinetic factors responsible for scan-rate dependence may lead to significant distortions and asymmetry of endotherms, especially at higher scanning rates. This points to the need to check for scan-rate dependence, even in the case of reversible denaturation, before any attempt is made to analyze asymmetric DSC curves by standard thermodynamic procedures. Experiments with the disulfide-bridge-containing mutant indicate that the introduction of the disulfide bond provides additional stabilization of xylanase by changing the rate-limiting step on the thermal denaturation pathway.     

Soybean Bowman–Birk Inhibitor Conjugates with Clinical Dextran. Synthesis and Antiproteolytic Activity

Conjugates of the classical soybean Bowman-Birk inhibitor (BBI) with clinical dextran were synthesized. Clinical dextran was preliminarily oxidized with periodate to dialdehydedextran (DAD). The effect of the degree of oxidation of DAD on coupling of the inhibitor was evaluated. The binding of the protein was shown to increase with increasing degree of DAD oxidation (5, 10, 20%). Total coupling of the inhibitor occurred when the degree of oxidation of the dextran was 20%. The BBI-DAD (20%) conjugate contained 13% protein with BBI/DAD molar ratio 1 : 1. The conjugates retained the ability to inhibit trypsin (Ki = 0.2-0.3 nM) and alpha-chymotrypsin (Ki = 15-30 nM). Thus, the coupling of BBI with the polymeric carrier caused practically no decrease in the antiproteolytic activity of the inhibitor.     

Immobilization of viable yeast cells within polyaldehyde-hardened gelatin gel

Summary A gel-entrapment method particularly suitable for viable cells is described. The gel matrix is gelatin insolubilized by interaction with polymeric aldehydes (polyaldehydes) prepared by periodate oxidation of polysaccharides such as starch and dextran. The viability of the entrapped cells is evidenced by growth measurement and by SEM analysis of the immobilizate.     

Peroxidase-conjugate chromatography isolation of conjugates prepared with glutaraldehyde or periodate using polyacrylamide-agarose gel.

Fractionation abilities of polyacrylamide-agarose gel (Ultrogel) and dextran gel (Sephadex) column chromatography were compared in isolating horseradish peroxidase conjugates, prepared using two different methods. Utrogel AcA-44 provides an efficient separation of monomer conjugated and nonconjugated immunoglobulins resulting from the two-step glutaraldehyde procedure, Sephadex G-200 does not. Both types of columns eluted the polymer conjugates resulting from the periodate procedure in the void volume; these were hardly isolated from the small amount of monomer conjugate. Unreacted horseradish peroxidase, present in very low quantities after the efficient periodate method and in large amounts after the glutaraldehyde procedure, was separated by both gel types.