The relationship of food intake and ingesta passage predicts feeding ecology in two different megaherbivore groups

Digestion, especially of plant material, is a time-dependent process. In herbivores, an increase in food intake is usually correlated to an acceleration of ingesta passage through the gut, and could hence depress digestive efficiency. Therefore, the nature of the relationship between food intake and ingesta passage (i.e. whether the increase in ingesta passage due to the increase in food intake is mild or drastic) should determine the flexibility of the feeding strategy of herbivore and omnivore species. Using two megaherbivore groups, the elephants and the hippopotamuses, as examples from opposing ends of the range of potential adaptations to this problem, we demonstrate that the species-specific relationship of food intake and ingesta passage can precisely predict feeding ecology and activity budgets. In hippos, the distinct acceleration in ingesta passage due to increased intake limits the additional energy gained from eating more forage, and explains the comparatively low food intake and short feeding times generally observed in these animals. In elephants, increased food intake only leads to a very moderate increase of ingesta passage, thus theoretically allowing to optimize energy gain by eating more, which is in accord with the high food intake and long feeding times observed in these animals. We suggest that the characterization of the intake-passage relationship in herbi- and omnivorous species is of much higher ecological relevance than the determination of a supposedly species-specific "passage time/mean retention time".     

Yield and dynamics of tritrophic food chains

Strong relationships between yield and dynamic behavior of tritrophic food chains are pointed out by analyzing the classical Rosenzweig-MacArthur model. On the one hand, food chains are subdivided into undersupplied and oversupplied categories, the first being those in which a marginal increase of nutrient supply to the bottom produces a marginal increase of mean yield at the top. On the other hand, a detailed bifurcation analysis proves that dynamic complexity first increases with nutrient supply (from stationary to a low-frequency cyclic regime and, finally, to chaos) and then decreases (from chaos to a high-frequency cyclic regime). A careful comparison of the two analyses supports the conclusion that food chains cycling at high frequency are oversupplied, while all others are undersupplied. A straightforward consequence of this result is that maximization of food yield requires a chaotic regime. This regime turns out to be very often on the edge of a potential catastrophic collapse of the top component of the food chain. In other words, optimality implies very complex and dangerous dynamics, as intuitively understood long ago for ditrophic food chains by Rosenzweig in his famous article on the paradox of enrichment.     

KINETIC AND HISTOLOGICAL CHANGES OF A SERIALLY TRANSPLANTED MOUSE TUMOUR

A serially transplanted mouse tumour, NT1, was studied histologically and by autoradiography using tritiated thymidine at three stages in its transplant history: after two, seventeen and twenty-seven passages. the growth rate of the tumour decreased progressively with increasing passage number, and the mean cycle time of the tumour cells increased from 21 hr to 34 hr between the seventeenth and twenty-seventh passages. Histologically the tumour changed from having an epithelial structure (second passage), to having a mixed structure with at least two histologically different regions (seventeenth passage), to having a fibrous structure (twenty-seventh passage). Radiation response experiments were carried out on the second and twenty-seventh passaged tumours, the results of which are consistent with the kinetic and histological changes.     

Food passage time and daily ration of bighead carp,Aristichthys nobilis,kept in cages

Synopsis The food passage time of bighead carp weighing 13 to 2850 g was 7.1 to 12.8 h and the daily food ration was 5.7 to 2% of body weight at water temperatures ranging from 21 to 28.5°C. Food passage time tended to be shorter for larger fish because the speed of passage was substantially higher for the larger fish: 323 mm h^–1 for the larger fish and 67 mm h^–1 for smaller fish. Gut length increased with increased body length. Relative gut length showed great variability. It increased with increasing fish body length up to about 250 mm and remained similar for larger fish.     

CHANGES IN THE DNA SYNTHETIC PERIOD DURING THE PHASE OF RAPID GROWTH IN CULTURED DIPLOID FIBROBLASTIC CELLS

The DNA synthetic period in diploid fibroblastic cell populations was studied during the phase of rapid growth in vitro , using the labelled mitotic wave method and quantitative autoradiography.
It was found that the length of the DNA synthetic period increased progressively, from early passage levels, with the number of generations in vitro. the increase was mainly in the time taken to synthesize the first 50%, and especially the first 10%, of DNA.
The change was detectable despite the complication due to a low level of tritium incorporation after the removal of tritiated thymidine from the cultures.     

Cartilage keratan sulphate: changes in chain length with ageing

Keratan sulphate from sheep nasal cartilage of five different ages was isolated by a combination of methods. The mean length of the chains progressively increased with ageing, as assessed by the molar ratio of glucosamine to galactosamine or galactosaminitol. The mean length ranges from eight monosaccharides for the younger to seventeen monosaccharides for the older animals. The results suggest that the increase in keratan sulphate content of cartilage may be due to the increase in the length and not in the number of chains.     

A matter of size: the population structure of the smallest known living shark,Etmopterus perryi (Springer & Burgess, 1985), from deep waters off the Colombian Caribbean coast

The dwarf lanternshark (Etmopterus perryi) is the smallest known described shark, and practically no information has been available on this species since first described in the mid-1980s. Therefore, the aim of this work is to describe, for the first time, the population structure regarding dwarf lanternshark in the Colombian Caribbean Sea. During deep-water research surveys conducted along the Colombian Caribbean coast, 87 stations were sampled using the swept area method. A total of 153 dwarf lanternshark individuals were caught in depths ranging from 230 to 530 m. This information was used to describe the size structures, morphological measurements including length-at-weight relationship, length at maturity in females and the spatial distribution of mean length and biomass of the species. The lengths of individuals ranged from 78.02 to 289.00 mm total length (TL), which is a new record of maximum length for this species. The spatial distribution of mean lengths and biomass distributions show high abundances and high relative mean lengths in the northeast area off Santa Marta and the area northwest of Riohacha. The mean biomass density in the whole prospected area was 5.52 kg km⁻². Length at 50% maturity in females was estimated in 203 mm TL (95% C.I. : 190–214 mm). Deep-water elasmobranch species, such as the dwarf lantern shark, are expected to show extremely low resilience to fishing exploitation, even when they are not targeted by commercial fishing. Therefore, the information reported in this study can serve as a baseline upon which management measurements can be proposed for the conservation of this shark species.     

Neuron's firing time

The interspike interval distribution of neuronal firing is analyzed by a model that assumes unit effect EPSP's lasting an exponential length of time. The model allows a general interarrival distribution; this contrasts with the numerous models requiring Poisson arrivals. The Laplace transform of the time to firing, modelled as the first passage time to a fixed arbitrary threshold level, is found. Comparisons are made for exponential and regular interarrivals using the first two moments of the time to firing. Surprisingly, the mean and variance of the time to reach any threshold level greater than one is greater for regular arrivals for any ratio of mean interarrival intervals to mean EPSP duration greater than 0.6.     

Terrestrial food web of the Malpelo Fauna and Flora Sanctuary,Colombia: An analysis from a topological approach

Malpelo Island is the largest marine protected area (MPA) in the Colombian Pacific; however, the lack of information regarding its ecological dynamics suggests that management and conservation strategies are developed from an individual approach (species or groups of species) and not from an ecosystem one. This study analyzes the terrestrial food web of Malpelo Island, Colombia, based on topological analysis (e.g., centrality). The food web was constructed from 27 nodes representing the main trophogroups, which consist of species or functional groups. Malpelo Island had a food web of four steps with a maximum separation among all trophogroups and trophic pathways, with two steps in average length. Furthermore, the food web was divided into three food web compartments, with a recurrence of connectivity patterns dominated by apparent and exploitative competition, followed by tri-trophic chains and omnivory. Five key trophogroups control the energy flow throughout the food web (detritus, the land crab Johngarthia malpilensis, the lizard Anolis agassizi, the Malpelo dotted galliwasp Diploglossus millepunctatus, and the Nazca booby Sula granti). The high importance of detritus suggests that bottom-up processes act as a control and regulation mechanism of trophic flows. The low number of food web compartments and a high recurrence of specific connectivity patterns in the Malpelo Island terrestrial ecosystem evidence different ecological processes centered on five trophogroups, allowing stability against disturbances. In addition, the simulation of trophogroup removal (randomly or directed) suggests that food web can be vulnerable to structural alterations in their properties, which may have consequences on the resilience of this ecosystem. This study contributes to the knowledge of the trophic dynamics of Malpelo Island, providing a potential tool for management and conservation measures from an ecosystemic approach.     

The statistics of calcium-mediated focal excitations on a one-dimensional cable

It is well known that various cardiac arrhythmias are initiated by an ill-timed excitation that originates from a focal region of the heart. However, up to now, it is not known what governs the timing, location, and morphology of these focal excitations. Recent studies have shown that these excitations can be caused by abnormalities in the calcium (Ca) cycling system. However, the cause-and-effect relationships linking subcellular Ca dynamics and focal activity in cardiac tissue is not completely understood. In this article, we present a minimal model of Ca-mediated focal excitations in cardiac tissue. This model accounts for the stochastic nature of spontaneous Ca release on a one-dimensional cable of cardiac cells. Using this model, we show that the timing of focal excitations is equivalent to a first passage time problem in a spatially extended system. In particular, we find that for a short cable the mean first passage time increases exponentially with the number of cells in tissue, and is critically dependent on the ratio of inward to outward currents near the threshold for an action potential. For long cables excitations occurs due to ectopic foci that occur on a length scale determined by the minimum length of tissue that can induce an action potential. Furthermore, we find that for long cables the mean first passage time decreases as a power law in the number cells. These results provide precise criteria for the occurrence of focal excitations in cardiac tissue, and will serve as a guide to determine the propensity of Ca-mediated triggered arrhythmias in the heart.     

Simple aspects of foodweb complexity

Foodweb data are examined to obtain a number of indices of the complexity of the webs, such as connectance and mean length of food chains. The index β = E/V (E = number of interactions, V = number of kinds of organism) takes values with mean 1·88 and fractional root mean square deviation 0·27, over a set of thirty foodwebs. These are about equally divided between sink and community webs. Mean chain length is smaller in sink webs than in community webs. It is suggested that the small spread of the β values results from a balance between this and the greater number of chains in the sink webs, when expressed on a scale suggested by a trophic partition of the kinds of organism. Comments are made on a model of foodwebs with an optimal connectance for stability, and on currently available general methods for studying complexity and stability.     

Food consumption of vendace Coregonus albula larvae in Lake Lentua, Finland

The daily ration of vendace larvae (mean TL 10·1–12·8 mm) was assessed after a time-intensive field survey in Lake Lentua. Ten larvae were sampled every 2 h throughout the 10-day sampling period and their alimentary tract contents analysed. The gut was cut into four quarters of equal length and each quarter was analysed separately. This procedure enabled the assessment of the proportions of different zooplankton taxa in the diet based on the least degraded first-quarter contents and to reconstruct the entire gut contents. Secondly, the gut passage time of ingested zooplankton was evaluated by comparing the degradation rate of zooplankton in the guts of experimentally fasted larvae to the degradation of zooplankton in the gradient from pharynx to anus among the larvae sampled from the lake. Finally, food consumption was calculated as zooplankton individuals and carbon biomass based on the two variables, gut passage time of constantly feeding larvae and reconstructed gut contents. The daily ration of vendace larvae varied between 14 and 450 zooplankters in the monitored period.     

Dependence of lipid chain and head group packing of the inverted hexagonal phase on hydration

A model which positions the hydrophobic/hydrophilic boundary in phosphatidylethanolamine lipids at the first CH₂ group in the acyl or alkyl chain is used to calculate the surface area per lipid, the mean chain and head-group dimensions and diameters of the hydrophilic tubes of the inverted hexagonal phase of didodecylphosphatidylethanolamine. The calculated surface areas compare favorably with areas obtained for the lamellar liquid crystal phase of the same lipid using the same boundary. Placement of the boundary within the lipid structure permits a determination of the maximum headgroup packing at hydration levels down to complete dehydration. The headgroup dimensions are consistent with a 5 Å diam void at the center of a hydrophilic tube at zero hydration. The calculated mean fluid chain length is ~2 Å smaller than the mean chain length of the lamellar phase at comparable levels of hydration. Comparison of the calculated mean fluid chain length and distances between hydrophobic boundaries shows that the fluid chains are interdigitated between adjacent tubes, and not interdigitated in the central space between three tubes. At low hydration the chains interdigitate in both spaces. The number of lipids packed around a tube at low hydration is only a function of the headgroup geometry, whereas at high hydration, it is a function of the number of carbon atoms in the chains.     

Longer guts and higher food quality increase energy intake in migratory swans

1. Within the broad field of optimal foraging, it is increasingly acknowledged that animals often face digestive constraints rather than constraints on rates of food collection. This therefore calls for a formalization of how animals could optimize food absorption rates. 2. Here we generate predictions from a simple graphical optimal digestion model for foragers that aim to maximize their (true) metabolizable food intake over total time (i.e. including nonforaging bouts) under a digestive constraint. 3. The model predicts that such foragers should maintain a constant food retention time, even if gut length or food quality changes. For phenotypically flexible foragers, which are able to change the size of their digestive machinery, this means that an increase in gut length should go hand in hand with an increase in gross intake rate. It also means that better quality food should be digested more efficiently. 4. These latter two predictions are tested in a large avian long-distance migrant, the Bewick's swan (Cygnus columbianus bewickii), feeding on grasslands in its Dutch wintering quarters. 5. Throughout winter, free-ranging Bewick's swans, growing a longer gut and experiencing improved food quality, increased their gross intake rate (i.e. bite rate) and showed a higher digestive efficiency. These responses were in accordance with the model and suggest maintenance of a constant food retention time. 6. These changes doubled the birds' absorption rate. Had only food quality changed (and not gut length), then absorption rate would have increased by only 67%; absorption rate would have increased by only 17% had only gut length changed (and not food quality). 7. The prediction that gross intake rate should go up with gut length parallels the mechanism included in some proximate models of foraging that feeding motivation scales inversely to gut fullness. We plea for a tighter integration between ultimate and proximate foraging models.     

Indirect Energy Flows in Niche Model Food Webs: Effects of Size and Connectance

Indirect interactions between species have long been of interest to ecologists. One such interaction type takes place when energy or materials flow via one or more intermediate species between two species with a direct predator-prey relationship. Previous work has shown that, although each such flow is small, their great number makes them important in ecosystems. A new network analysis method, dynamic environ approximation, was used to quantify the fraction of energy flowing from prey to predator over paths of length greater than 1 (flow indirectness or FI) in a commonly studied food web model. Web structure was created using the niche model and dynamics followed the Yodzis-Innes model. The effect of food web size (10 to 40 species) and connectance (0.1 to 0.48) on FI was examined. For each of 250 model realizations run for each pair of size and connectance values, the FI of every predator-prey interaction in the model was computed and then averaged over the whole network. A classification and regression tree (CART) analysis was then used to find the best predictors of FI. The mean FI of the model food webs is 0.092, with a standard deviation of 0.0279. It tends to increase with system size but peaks at intermediate connectance levels. Of 27 potential predictor variables, only five (mean path length, dominant eigenvalue of the adjacency matrix, connectance, mean trophic level and fraction of species belonging to intermediate trophic levels) were selected by the CART algorithm as best accounting for variation in the data; mean path length and the dominant eigenvalue of the adjacency matrix were dominant.     

Cotranslational Folding Increases GFP Folding Yield

Protein sequences evolved to fold in cells, including cotranslational folding of nascent polypeptide chains during their synthesis by the ribosome. The vectorial (N- to C-terminal) nature of cotranslational folding constrains the conformations of the nascent polypeptide chain in a manner not experienced by full-length chains diluted out of denaturant. We are still discovering to what extent these constraints affect later, posttranslational folding events. Here we directly address whether conformational constraints imposed by cotranslational folding affect the partitioning between productive folding to the native structure versus aggregation. We isolated polyribosomes from Escherichia coli cells expressing GFP, analyzed the nascent chain length distribution to determine the number of nascent chains that were long enough to fold to the native fluorescent structure, and calculated the folding yield for these nascent chains upon ribosome release versus the folding yield of an equivalent concentration of full-length, chemically denatured GFP polypeptide chains. We find that the yield of native fluorescent GFP is dramatically higher upon ribosome release of nascent chains versus dilution of full-length chains from denaturant. For kinetically trapped native structures such as GFP, folding correctly the first time, immediately after release from the ribosome, can lead to lifelong population of the native structure, as opposed to aggregation.     

The reproductive cycle, condition and feeding in Barbus liberiensis, a tropical stream-dwelling cyprinid

This investigation examines the biology of Barbus liberiensis , a small cyprinid living in the forest streams of Sierra Leone and Liberia, in relation to seasonal changes in the environment. The population studied showed a single discrete breeding season coinciding with the early part of the rains. Maturing fish previously marked moved upstream at this time. The pattern of gonad development is analysed and the relationship of fecundity to body size is defined numerically. The total and somatic (i.e. excluding gonad weights) condition of the fishes, relative to the length/weight data in September-November when the gonads are resting, reach a peak at spawning time for both mature males and females and for immature fish. The pattern of condition during a year differs in the two sexes.
B. liberiensis consumes a wide variety of foods but relies largely on insects and higher plant fragments. Debris from the forest canopy is an important source of nutriment. The fish feed, during the daytime and possibly at night, throughout the year. Experiments to determine the rate at which food passes through the gut are described and show that food passage is rapid.
The seasonal cycles in condition and reproduction are discussed in relation to cycles in some other tropical and temperate riverine fishes.     

Connection topology of proteins

One-dimensional amino acid sequences and three-dimensional foldedpolypeptide chains were modelled as non-directed graphs in whichnodes corresponded to amino acids and arcs repre sented connectionsbetween them. In the case of folded chains, non-backbone connectionswere assigned to amino acid pairs if their distance was lowerthan a threshold. Two topological indices, the connectednessnumber and the effective chain length were devised to comparefolding topologies. Loops created by non-backbone connectionsin the structure graphs were studied by simple graphical representations,revealing the hierarchy in native protein structures.     

Microbial food chains and food webs

Mathematical models for simple microbial food chains and food webs in continuous culture are developed and analyzed. A model for competition of two microbial species for a single scarce resource is also presented as a degenerate case of the food web model. Two models for food chains are developed. The first is based on a model of microbial growth (Monod's) that is widely mentioned and used at the present time. The second is based on a generalization of that model that recent experimental results on microbial food chains seem to require. Experimental data for microbial food webs are almost entirely lacking but a tentative model having what are felt to be the right properties is developed and analyzed. The results obtained from these models seem to be consistent in most circumstances with current ecological thinking on community dynamics.     

Species–area relationships across four trophic levels – decreasing island size truncates food chains

That larger areas will typically host more diverse ecological assemblages than small ones has been regarded as one of the few fundamental ‘laws’ in ecology. Yet, area may affect not only species diversity, but also the trophic structure of the local ecological assemblage. In this context, recent theory on trophic island biogeography offers two clear‐cut predictions: that the slope of the species–area relationship should increase with trophic rank, and that food chain length (i.e. the number of trophic levels) should increase with area. These predictions have rarely been verified in terrestrial systems. To offer a stringent test of key theory, we focused on local food chains consisting of trophic specialists: plants, lepidopteran herbivores, and their primary and secondary parasitoids. For each of these four trophic levels, we surveyed species richness across a set of 20 off‐shore continental islands spanning a hundred‐fold range in size. We then tested three specific hypotheses: that species richness is affected by island size, that the slope of the species–area curve is related to trophic rank, and that such differences in slope translate into variation in food chain length with island size. Consistent with these predictions, estimates of the species–area slope steepened from plants through herbivores and primary parasitoids to secondary parasitoids. As a result of the elevated sensitivity of top consumers to island size, food chain length decreased from large to small islands. Since island size did not detectably affect the ratio between generalists and specialists among either herbivores (polyphages vs oligophages) or parasitoids (idiobionts vs koinobionts), the patterns observed seemed more reflective of changes in the overall number of nodes and levels in local food webs than of changes in their linking structure. Overall, our results support the trophic‐level hypothesis of island biogeography. Per extension, they suggest that landscape modification may imperil food web integrity and vital biotic interactions.