The embryology of <Emphasis Type="Italic">Xanthoceras</Emphasis> and its phylogenetic implications

Recent molecular analyses found the Chinese monotypic genus Xanthoceras to be either a sister genus to the rest of a broadly defined Sapindaceae sensu lato (s.l.) including Aceraceae and Hippocastanaceae or the only genus of the Xanthoceraceae. Here we investigate for the first time the embryology of Xanthoceras and compare the embryological data with related taxa to aid in understanding the phylogenetic relationships of this genus. The results indicate that Xanthoceras shares many embryological features with Sapindaceae sensu stricto (s.s.), Aceraceae, and Hippocastanaceae, including a glandular tapetum, simultaneous microsporogenesis, three-colporate pollen grains, a bitegmic and crassinucellate ovule, Polygonum type of embryo sac development, endosperm formation of the nuclear type, and exalbuminous mature seeds. The wide range of similarities in embryological features suggests that Xanthoceras is closely related to other members of Sapindaceae s.l. However, Xanthoceras differs from other Sapindaceae in several morphological characteristics, for instance, five to eight ovules in each locule in Xanthoceras versus one to two ovules in each locule in other Sapindaceae s.l., and five golden horn-like appendages present on both staminate and hermaphrodite flowers of Xanthoceras versus absent on the flowers of other Sapindaceae s.l. We propose that Xanthoceras merits recognition at the subfamily level as Xanthoceroideae, rather than at the family level as Xanthoceraceae. The present study also reveals that late-acting ovarian self-incompatibility (OSI) occurs in X. sorbifolium and that postzygotic OSI contributes to the self-sterility of the species.     

滇东南马关古林箐热带雨林望天树群落的研究

云南东南部马关县古林箐的望天树群落以龙脑香科植物望天树为乔木层优势种,无患子科植物番龙眼为亚优势种,外貌以常绿大、中高位芽植物组成为特征,林内板根和茎花现象普遍,层间木质藤本和维管附生植物丰富,属于一种热带季节性雨林群落类型。在植物区系组成上,该群落以樟科、番荔枝科、楝科、大戟科、桑科、无患子科、橄榄科、柿树科等为主要组成科,在重要值统计上,以大戟科、无患子科、柿树科、龙脑香科、番荔枝科、樟科、楝科、橄榄科、桑科等为较优势的科,与东南亚热带雨林很接近,故为东南亚热带雨林的北缘类型。     

Occurrence of physical dormancy in seeds of Australian Sapindaceae: a survey of 14 species in nine genera

Background and Aims

Sapindaceae is one of 16 angiosperm families whose seeds have physical dormancy (PY). However, the extent and nature of PY within this family is poorly known. The primary aims of this study were: (1) to evaluate seed characteristics and determine presence (or not) of PY within nine genera of Australian Sapindaceae; and (2) to compare the frequency of PY across the phylogenetic tree within Australian Sapindaceae.

Methods

Viability, imbibition and seed characteristics were assessed for 14 taxa from nine genera of Sapindaceae. For five species of Dodonaea, optimal conditions for germination and dormancy break were evaluated. An in situ burial experiment was performed on D. hackettiana seeds to identify the factor(s) responsible for overcoming PY. Classes of dormancy and of non-dormancy for 26 genera of Sapindaceae were mapped onto a phylogenetic tree for the family.

Key Results

Mean seed viability across all taxa was 69·7 %. Embryos were fully developed and folded (seven genera) or bent (two genera); no endosperm was present. Seeds of all five Dodonaea spp. and of Distichostemon hispidulus had PY. Hot-water treatment released PY in these six species. Optimal germination temperature for seeds of the four Dodonaea spp. that germinated was 15–20 °C. Following 5 months burial in soil, 36·4 % of D. hackettiana seeds had lost PY and germinated by the beginning of the winter wet season (May). Laboratory and field data indicate that dormancy was broken by warm, moist temperatures (≥50 °C) during summer.

Conclusions

PY occurs infrequently in genera of Sapindaceae native to Australia. Seeds of Dodonaea and Distichostemon had PY, whereas those of the other seven genera did not. Seeds of these two genera and of Diplopeltis (a previous study) are the only three of the 20 native Australian genera of Sapindaceae for which germination has been studied that have PY; all three belong to subfamily Dodonaeoideae.Key words: Dodonaea spp., physical dormancy, Sapindaceae, seed ecology, seed germination     

Floral organogenesis of Delavaya toxocarpa (Sapindaceae; Sapindales)

The floral organogenesis and development of Delavaya toxocarpa Franch. (Sapindaceae) were studied under scanning electron microscope and light microscope to determine its systematic position within Sapindaceae. Flowers arise in terminal thyrses. The sepal primordia initiate in a spiral (2/5) sequence, which are not synchronous. The five petal primordia initiate almost synchronously and alternate with sepal primordia. Eight stamens initiate almost simultaneously and their differentiation precedes that of the petals. The last formed petal and one stamen initiate from a common primordium. Mature stamens curve inwards and cover the ovary in bud. The gynoecium begins as a hemispheric primordium on which two carpellary lobes arise simultaneously. Later in development a single gynocium is formed with two locules and two ovules per locule. Floral morphology suggests a closer affinity with Sapindaceae, although certain features of floral ontogenesis are similar to those observed in certain members of the former Hippocastanaceae, such as Handeliodendron.     

中国高等植物省级分布新记录(二)

报道了槭树科、漆树科、大戟科、清风藤科、无患子科、苦木科共 1 8种植物在我国 1 3个省区中的分布新记录。其中福建分布新记录的植物有山地五月茶 ,甘肃分布新记录的有鸡爪槭 ,广东、江苏和云南分布新记录的有湖北算盘子 ,广西分布新记录的有五尖槭和滇赤才 ,贵州分布新记录的有甜叶算盘子 ,河南分布新记录的有红叶野桐 ,湖南分布新记录的有狭序泡花树 ,江西分布新记录的有长柄槭、柳叶五月茶和黑面神 ,陕西分布新记录的有川滇无患子 ,四川分布新记录的有伞花木 ,西藏分布新记录的有五裂槭、中华槭、藤漆、小花清风藤和柔毛鸦胆子     

Sporogenesis and gametogenesis of Delavaya toxocarpa (Sapindaceae) and their systematic implications

In order to investigate the embryological characteristics of Delavaya toxocarpa Franch. and provide a basis for further understanding the phylogeny within Sapindaceae s.l., we studied the sporogenesis and gametogenesis of D. toxocarpa using the conventional paraffin section method. The results were as follows: anthers are tetrasporangium; tapetum is typically secretory type; cytokinesis in the microsporecyte meiosis is of the simultaneous type and microspore tetrads are tetrahedral; mature pollen contains two cells; the ovary is bilocular with two ovules per locule; placentation is axial; the ovule is amphitropous, bitegmic, and crassinucellate; the chalazal megaspore in a linear tetrad becomes functional; and the development of megaspore is of the polygonum type. Most similarities shared by the species observed suggest that the species and genera of Sapindaceae s.l. have phylogenetic consistency. The distinctive trait, lacking hypostase, indicatesDelavaya (and Handeliodendron) might be more primitive than other genera in Sapindaceae. Moreover, some characters, such as opposite palmate compound leaf, apical thyrse, rounded seed without wing, 2 hemitropous ovules per locule, and lacking aril, indicate the close relationship between Delavaya, Aceraceae, and Hippocastanaceae. The preliminary data about the embryological and morphological characteristics in Delavaya might justify the basic systematic position of this genus in the family Sapindaceae s.s.     

Identification and characterization of the water gap in the physically dormant seeds of Dodonaea petiolaris: a first report for Sapindaceae

Background and Aims

The Sapindaceae is one of 17 plant families in which seed dormancy is caused by a water-impermeable seed or fruit coat (physical dormancy, PY). However, until now the water gap in Sapindaceae had not been identified. The primary aim of this study was to identify the water gap in Dodonaea petiolaris (Sapindaceae) seeds and to describe its basic morphology and anatomy.

Methods

Seed fill, viability, water-uptake (imbibition) and other characteristics were assessed for D. petiolaris seeds. The location and structure of the water gap were investigated using a blocking experiment, time series photography, scanning electron microscopy and light microscopy. Dodonaea petiolaris seeds with PY also were assessed for loss of PY at four ecologically significant temperatures under moist and dry conditions. Seeds of three other species of Sapindaceae were examined for presence of a water gap.

Key Results

The water gap in D. petiolaris seeds was identified as a small plug in the seed coat adjacent to the hilum and opposite the area where the radicle emerges. The plug was dislodged (i.e. water gap opened = dormancy break) by dipping seeds in boiling water for 2·5 min or by incubating seeds on a moist substrate at 20/35 °C for 24 weeks. Layers of cells in the plug, including palisade and subpalisade, are similar to those in the rest of the seed coat. The same kind of water gap was found in three other species of Sapindaceae, Diplopeltis huegelii, Distichostemon hispidulus and Dodonaea aptera.

Conclusions

Following dormancy break (opening of water gap), initial uptake of water by the seed occurs only through the water gap. Thus, the plug must be dislodged before the otherwise intact seed can germinate. The anatomy of the plug is similar to water gaps in some of the other plant families with PY.     

Comparative cladistics

Current strategies to compare or synthesize morphology-based cladistic hypotheses do not empower individual cladists to (i) understand the origin, authorship, or structure of character data, (ii) efficiently locate and collate previously published character data, or (iii) effectively compare character data from competing cladistic hypotheses. This paper outlines the requisite terminology, methods and indices to effectively compile and compare morphological character data between competing cladistic hypotheses and to isolate and measure the most important factors behind differing cladistic results—character selection and character-state scoring. When the procedures outlined here are facilitated by appropriate software, morphology-based cladistics may overcome long-recognized limitations in data comparison and synthesis.     

Floral organogenesis of Delavaya toxocarpa （Sapindaceae; Sapindales）

The floral organogenesis and development of Delavaya toxocarpa Franch. （Sapindaceae） were studied trader scanning electron microscope and light microscope to determine its systematic position within Sapindaceae. Flowers arise in terminal thyrses. The sepal primordia initiate in a spiral （2/5） sequence, which are not synchronous. The five petal primordia initiate almost synchronously and alternate with sepal primordia. Eight stamens initiate almost simultaneously and their differentiation precedes that of the petals. The last formed petal and one stamen initiate from a common primordium. Mature stamens curve inwards and cover the ovary in bud. The gynoecium begins as a hemispheric primordium on which two carpellary lobes arise simultaneously. Later in development a single gynocium is formed with two locules and two ovules per locule. Floral morphology suggests a closer affinity with Sapindaceae, although certain features of floral ontogenesis are similar to those observed in certain members of the former Hippocastanaceae, such as Handeliodendron.     

The complete chloroplast genome sequence of <Emphasis Type="Italic">Dodonaea viscosa</Emphasis>: comparative and phylogenetic analyses

The plant chloroplast (cp) genome is a highly conserved structure which is beneficial for evolution and systematic research. Currently, numerous complete cp genome sequences have been reported due to high throughput sequencing technology. However, there is no complete chloroplast genome of genus Dodonaea that has been reported before. To better understand the molecular basis of Dodonaea viscosa chloroplast, we used Illumina sequencing technology to sequence its complete genome. The whole length of the cp genome is 159,375 base pairs (bp), with a pair of inverted repeats (IRs) of 27,099 bp separated by a large single copy (LSC) 87,204 bp, and small single copy (SSC) 17,972 bp. The annotation analysis revealed a total of 115 unique genes of which 81 were protein coding, 30 tRNA, and four ribosomal RNA genes. Comparative genome analysis with other closely related Sapindaceae members showed conserved gene order in the inverted and single copy regions. Phylogenetic analysis clustered D. viscosa with other species of Sapindaceae with strong bootstrap support. Finally, a total of 249 SSRs were detected. Moreover, a comparison of the synonymous (Ks) and nonsynonymous (Ka) substitution rates in D. viscosa showed very low values. The availability of cp genome reported here provides a valuable genetic resource for comprehensive further studies in genetic variation, taxonomy and phylogenetic evolution of Sapindaceae family. In addition, SSR markers detected will be used in further phylogeographic and population structure studies of the species in this genus.     

Nested cladistic analysis indicates population fragmentation shapes genetic diversity in a freshwater mussel

Recently developed phylogeographic analyses that incorporate genealogical relationships of alleles offer the exciting prospect of disentangling historical from contemporary events. However, the relative advantages and shortfalls of this approach remain to be studied. We compared the nested cladistic method to the more traditional analysis of variance approach in a study of intraspecific genetic variation in the freshwater mussel, Lampsilis hydiana. We surveyed 257 specimens for nucleotide sequence level variation in a fragment of the mitochondrial 16S rRNA gene. When compared side by side, nested cladistic analysis and analysis of molecular variance (AMOVA) identified fragmentation of Arkansas river populations from remaining populations to the southwest. Nested cladistic analysis identified a second, more recent separation of Ouachita and Upper Saline river populations that was not detected by AMOVA. Differences among analytical methods probably arise from treatment of spatial hierarchical information: hierarchical groups emerge via a parsimony criterion in nested cladistic analysis but must be specified a priori in AMOVA. Both methods identified significant genetic structure among localities within hierarchical groups. Results from AMOVA suggested little gene flow among local populations with an island model. However, inferences about process that gave rise to patterns at this level were not possible in nested cladistic analysis, because an ancestral (interior) haplotype was not observed for a key one-step clade in the parsimony network. Our results suggest that, under some circumstances, nested cladistic analysis has lower power than more traditional analysis of variance to infer processes at the local population level.     

Incorporating single-locus tests into haplotype cladistic analysis in case-control studies

In case-control studies, genetic associations for complex diseases may be probed either with single-locus tests or with haplotype-based tests. Although there are different views on the relative merits and preferences of the two test strategies, haplotype-based analyses are generally believed to be more powerful to detect genes with modest effects. However, a main drawback of haplotype-based association tests is the large number of distinct haplotypes, which increases the degrees of freedom for corresponding test statistics and thus reduces the statistical power. To decrease the degrees of freedom and enhance the efficiency and power of haplotype analysis, we propose an improved haplotype clustering method that is based on the haplotype cladistic analysis developed by Durrant et al. In our method, we attempt to combine the strengths of single-locus analysis and haplotype-based analysis into one single test framework. Novel in our method is that we develop a more informative haplotype similarity measurement by using p-values obtained from single-locus association tests to construct a measure of weight, which to some extent incorporates the information of disease outcomes. The weights are then used in computation of similarity measures to construct distance metrics between haplotype pairs in haplotype cladistic analysis. To assess our proposed new method, we performed simulation analyses to compare the relative performances of (1) conventional haplotype-based analysis using original haplotype, (2) single-locus allele-based analysis, (3) original haplotype cladistic analysis (CLADHC) by Durrant et al., and (4) our weighted haplotype cladistic analysis method, under different scenarios. Our weighted cladistic analysis method shows an increased statistical power and robustness, compared with the methods of haplotype cladistic analysis, single-locus test, and the traditional haplotype-based analyses. The real data analyses also show that our proposed method has practical significance in the human genetics field.     

The cladistic solution to the species problem

The correct explanation of why species, in evolutionary theory, are individuals and not classes is the cladistic species concept. The cladistic species concept defines species as the group of organisms between two speciation events, or between one speciation event and one extinction event, or (for living species) that are descended from a speciation event. It is a theoretical concept, and therefore has the virtue of distinguishing clearly the theoretical nature of species from the practical criteria by which species may be recognized at any one time. Ecological or biological (reproductive) criteria may help in the practical recognition of species. Ecological and biological species concepts are also needed to explain why cladistic species exist as distinct lineages, and to explain what exactly takes place during a speciation event. The ecological and biological species concepts work only as sub-theories of the cladistic species concept and if taken by themselves independently of cladism they are liable to blunder. The biological species concept neither provides a better explanation of species indivudualism than the ecological species concept, nor, taken by itself, can the biological species concept even be reconciled with species individualism. Taking the individuality of species seriously requires subordinating the biological, to the cladistic, species concept.     

中国慈姑属系统发育的研究

本文研究了中国慈姑属植物间的系统发育关系。选取了12个与该属系统发育有较重要关系的特征,将8个已知分类群与外类群刺果泽泻属进行了比较。应用数量分支分析的Farris-Wagner方法,建立了中国慈姑属系统发育分支图。讨论了各分类群间的系统发育关系、该属起源和数量分支分析方法等问题。     

CONGRUENCE BETWEEN SUPERPOSITIONAL AND PHYLOGENETIC PATTERNS: COMPARING CLADISTIC PATTERNS WITH FOSSIL RECORDS

Abstract— As the only direct evidence of past organismic history, the fossil record has always figured importantly in the reconstruction of phylogeny. But the incomplete nature of the fossil record has also been cited as a basis for claiming that fossils play only a secondary role in developing phylogenetic hypotheses that encompass extant taxa. The reliability of fossil data in such applications is a function of the degree of fit between superpositional relationships and the sequence of phylogenetic events. Thirty-eight vertebrate cases are examined for the fit between age data based on fossil first occurrences and phylogenetic results based on cladistic analysis. A general correspondence between superpositional and cladistic information is observed, although the degree of fit varies widely among cases. Horses, certain other ungulates, synapsids and basal archosaurs, which show very high correlations, are taxa characterized by an abundance of superpositional and cladistic data. Other groups, such as primates, show very poor correlations because certain major clades have either unreasonably short fossil durations or no fossil record at all. Correlations are also diminished when either fossil records or cladistic sequences are poorly resolved. In most cases, cladistic resolution was observed to exceed superpositional resolution. Correlations can be enhanced by more precise (e.g. radiometric) age dates, but these also place a high expectation on the fit between fossil first occurrence and cladistic results. Stratigraphic occurrence does not always provide a precise reflection of independently derived phylogenies, but the correspondence between age and cladistic information is remarkably high in a notable number of vertebrate examples.     

中国无患子科的花粉形态及其系统学意义

利用扫描电镜对国产无患子科(狭义,Sapindaceae)23属30种1变种植物的花粉形态进行了观察。结果显示,该科花粉粒多为扁球形,部分为长球形,少数为球形或近球形,极面观多为三角形;从花粉萌发孔类型看,大多数种类具三沟孔,有的形成合沟,少数仅具三孔而无沟;从花粉外壁纹饰看,多数花粉外壁具网状或条纹状雕纹,少数花粉的外壁具刺状或颗粒状纹饰。花粉形态特征支持文冠果亚科(Xanthoceroideae)以及广义鳞花木属(Lepisanthes)概念,并支持仍将茶条木属(Delavaya)置于车桑子亚科(Dodonaeoideae)。观察发现黄梨木(Boniodendron minus)与栾树属(Koelreuteria),龙眼属(Dimocarpus)、荔枝属(Litchi)与韶子属(Nephelium)从花粉形态上表现出较近的亲缘关系。基于花粉形态特征编制了国产无患子科分属检索表。     

螟黄足盘绒茧蜂复合群支序系统学研究（膜翅目：茧蜂科：小腹茧蜂亚科）

对螟黄足盘绒茧蜂复合群Cotesia flavipes complex (膜翅目：茧蜂科：小腹茧蜂亚科)分布全世界的5个种和外群侧沟茧蜂Microplitis 及荻茧蜂Diolcogaster 的25个性状,以及复合群5个种和外群螟蛉盘绒茧蜂Cotesia ruficrus、粘虫盘绒茧蜂Cotesia kariyai、粉蝶盘绒茧蜂Cotesia glomerata 的24个性状,分别进行比较研究,并运用支序分析的方法探讨该复合群内5个种种间的系统发育关系。支序分析表明螟黄足盘绒茧蜂复合群是一单系群,二化螟盘绒茧蜂C. chilonis 和大螟盘绒茧蜂C. sesamiae 近缘,芦螟盘绒茧蜂C. chiloluteelli 和汉寿盘绒茧蜂C. hanshouensis 近缘,螟黄足盘绒茧蜂C. flavipes相对独立。 以上研究表明无论是以近缘属作外群还是以同属其它种作外群,所得结果基本上都能反映螟黄足盘绒茧蜂复合群各种之间的分类地位。     

A cladistic analysis of chloroplast DNA restriction site variation and morphology for the genera of the Juglandaceae

The phylogenetic relationships of the genera of the Juglandaceae are examined with cladistic analyses of chloroplast DNA (cpDNA) restriction site variation and morphology. Rates of evolution of the chloroplast genome are slower than in many other groups of plants, enabling the entire genome to be utilized at the intergeneric level. The trees resulting from the two independent analyses were completely congruent. The combined analysis of the two data sets produced a tree completely congruent with the cladogram from the two data sets analyzed independently. The cladogram is compared with previous classifications, cladistic analyses, and fossil history for the family. Although the topology resulting from the cladistic analyses of this study was strongly congruent with previous estimates of relationships within the family, the fossil record indicates that the basal-most lineages in the cladistic trees arose later than the more terminal lineages. This reversed order of origin indicates that perhaps the rooting of the trees is erroneous.     

Paralogy and the Centre of Origin Concept

Ancestral area methodology, applied to finding the centre of origin, conflicts with most cladistic biogeographic methods since it uses, not reduces, paralogy. A new term, area cladistics, is herein proposed as an efficient paralogy-free (or reduced) method under the three-item philosophy that currently exists with other methods under the broad term cladistic biogeography.