Feeding mechanisms in bats: variation within the constraints of flight

By any standard, bats are a successful group of mammals andthe evolution of flight and echolocation were certainly keyinnovations behind their success. That is only part of the story,however. Bats have diversified into trophic niches that rangefrom insectivory to feeding on blood, fruit, or nectar. Whileflight places fundamental constraints on the shape of the postcranialskeleton, skull shape in bats is remarkably diverse. Morphologicalstudies of individual families and sympatric assemblages demonstratethat variation in skull shape is clearly associated with trophicspecialization. Field experiments demonstrate that species-specificbiting behaviors during feeding are common and analyses indicatethat the evolution of cranial morphology and feeding behaviorare correlated. Modeling experiments further suggest that feeding(loading) behaviors and skull shape are functionally linked.If the skulls of bats are under selective pressure for minimalmass because of the energetic demands of flight, then they maybe more "optimized" to meet mechanical demands than are theskulls of other mammals. This would make bats a unique modelsystem for studying the evolution of diversity in skull shapeand its functional implications for the evolution of feedingstrategies in mammals.     

Cross-linking evidence for motional constraints within chemoreceptor trimers of dimers

Chemotactic behavior in bacteria relies on the sensing ability of large chemoreceptor clusters that are usually located at the cell pole. In Escherichia coli, chemoreceptors exhibit higher-order interactions within those clusters based on a trimer-of-dimers organization. This architecture is conserved in a variety of other bacteria and archaea, implying that receptors in many microorganisms form trimer-of-dimer signaling teams. To gain further insight into the assembly and dynamic behavior of receptor trimers of dimers, we used in vivo cross-linking targeted to cysteine residues at various positions that define six different levels along the cytoplasmic signaling domains of the aspartate and serine chemoreceptors, Tar and Tsr, respectively. We found that the cytoplasmic domains of these receptors are close to each other near the trimer contact region at the cytoplasmic tip and lie farther apart as the receptor dimers approach the cytoplasmic membrane. Tar and Tsr reporter sites within the same or closely adjacent levels readily formed mixed cross-links, whereas reporters located different distances from the tip did not. These findings indicate that there are no significant vertical displacements of one dimer with respect to the others within the trimer unit. Attractant stimuli had no discernible effect on the cross-linking efficiency of any of the reporters tested, but a strong osmotic stimulus reproducibly enhanced cross-linking at most of the reporter sites, indicating that individual dimers may move closer together under this condition.     

Temperature fluctuations within English lowland ponds

Continuous records were made, for almost two years, of the water temperatures in two ponds in Leicestershire, England. The number of degree-hours and the weekly and monthly mean temperatures were calculated.The water temperature in the ponds and the factors influencing the temperatures were very different in the winter and summer. In the winter the water temperature was fairly uniform, only fluctuating slightly, and was influenced mainly by the air temperature. In the summer the water temperature was very variable within a pond and was mainly influenced by the amount of sunshine received. The range of temperature fluctuation and rate of change within a pond varied inversely with the depth of water, water cloudiness and the amount of plant growth. These internal factors had greatest effects in the summer when the influence of the sun was greatest.The effect of temperature on pond water animals is briefly discussed.

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Zusammenfassung Während fast zwei Jahren wurden in Leicestershire, England, fortlaufend die Wassertemperaturen von zwei Teichen genommen. Die Zahl der Stedengrade und die wöchentliche und monatliche Durchschnittstemperatur wurden ausgerechnet.Die Wassertemperaturen in diesen Teichen und die Faktoren, die die Temperaturen beeinflussten, waren im Winter und Sommer sehr verschieden. Die Temperaturschwankung war im Winter sehr gering und wurde hauptsächlich durch die Lufttemperatur bedingt. Dagegen war die Temperaturschwankung während des Sommers sehr gross, was hauptsächlich der Quantität von Sonnenschein zu verdanken war. Der Bereich der Temperaturschwankungen und das Mass der Temperaturveränderungen innerhalb eines Teiches waren im umgekehrten Verhältnis zu der Wassertiefe, Wassertrübung und Pflanzenmenge. Diese internen Faktoren sind also im Sommer von grosser Bedeutung, da sie die Wirkung eines zu starken Sonneneinfalls verringern. Auch der Temperatureinfluss auf die Tierwelt des Teiches wird kurz berührt.

     

Seed size, dispersal, and aerodynamic constraints within the Bombacaceae

The aerodynamic constraints operating on the wind-dispersed, drag-producing diaspores of several species of the tropical family Bombacaceae were examined. Kapok (the drag-promoting appendage) was best characterized as a moderately flattened hemisphere impervious to air movement. The kapok shape was not isometric: kapok planform area was proportional to the kapok mass raised to the power 0.52 rather than to the 0.67 expected from isometry. Thus, necessarily, terminal velocity rises with seed mass much faster in this group than among taxa with winged seeds. Further, we derived the optimality argument to show that the kapok mass ought to be about 50% of the total diaspore mass (seed plus kapok). While seven of eight species had a lower kapok investment than this, and none were especially close to the theoretically optimal value, nonetheless the kapok investment values were hardly draws from a random distribution. Finally, the kapok fibers of these Bombacaceae species begin to bend at a drag of about 0.005 N, and this sets an upper limit on the efficient diaspore size of about 250 mg for the seed mass. This latter value is similar to the mass of the largest seed we know of in this family.     

Evaluating genome dynamics: the constraints on rearrangements within bacterial genomes

Inversions and translocations distinguish the genomes of closely related bacterial species, but most of these rearrangements preserve the relationship between the rearranged fragments and the axis of chromosome replication. Within species, such rearrangements are found less frequently, except in the case of clinical isolates of human pathogens, where rearrangements are very frequent     

Self-organizing circuit assembly through spatiotemporally coordinated neuronal migration within geometric constraints

Background

Neurons are dynamically coupled with each other through neurite-mediated adhesion during development. Understanding the collective behavior of neurons in circuits is important for understanding neural development. While a number of genetic and activity-dependent factors regulating neuronal migration have been discovered on single cell level, systematic study of collective neuronal migration has been lacking. Various biological systems are shown to be self-organized, and it is not known if neural circuit assembly is self-organized. Besides, many of the molecular factors take effect through spatial patterns, and coupled biological systems exhibit emergent property in response to geometric constraints. How geometric constraints of the patterns regulate neuronal migration and circuit assembly of neurons within the patterns remains unexplored.

Methodology/Principal Findings

We established a two-dimensional model for studying collective neuronal migration of a circuit, with hippocampal neurons from embryonic rats on Matrigel-coated self-assembled monolayers (SAMs). When the neural circuit is subject to geometric constraints of a critical scale, we found that the collective behavior of neuronal migration is spatiotemporally coordinated. Neuronal somata that are evenly distributed upon adhesion tend to aggregate at the geometric center of the circuit, forming mono-clusters. Clustering formation is geometry-dependent, within a critical scale from 200 µm to approximately 500 µm. Finally, somata clustering is neuron-type specific, and glutamatergic and GABAergic neurons tend to aggregate homo-philically.

Conclusions/Significance

We demonstrate self-organization of neural circuits in response to geometric constraints through spatiotemporally coordinated neuronal migration, possibly via mechanical coupling. We found that such collective neuronal migration leads to somata clustering, and mono-cluster appears when the geometric constraints fall within a critical scale. The discovery of geometry-dependent collective neuronal migration and the formation of somata clustering in vitro shed light on neural development in vivo.     

Scalar constraints in Tetrahymena evolution. Quantitative basal body variations within and between species

Tetrahymenas of 17 species of the T. pyriformis complex have been stained with protargol and analyzed for numbers of basal bodies in half cells just before cell division. At this stage, cells of all strains manifest considerable variation in numbers of basal bodies; the coefficient of variation (sigma/m) is usually between 0.05 and 0.10. Much of this variability is observed in cells in the same nutritional state, at the same stage of the growth cycle, and in the same part of the life cycle. The basal body variability may be related to the variation in macronuclear DNA content that results from the imprecise amitotic macronuclear division. With a few exceptions, strains of different species are difficult to distinguish on the basis of basal body numbers. The species means in the samples examined show a range only from 234 (T. furgasoni) to 481 (T. capricornis), about a twofold difference. This limited variation in the means suggests that these organisms are constrained within narrow limited by some scalar function of their organismic design, which prevents an evolutionary size dispersion--even though molecular scrambling has occurred in the complex at an appreciable rate for a very long evolutionary interval.     

Developmental constraints revealed by co-variation within and among molar rows in two murine rodents

SUMMARY Morphological integration corresponds to interdependency between characters that can arise from several causes. Proximal causes of integration include that different phenotypic features may share common genetic sets and/or interact during their development. Ultimate causes may be the prolonged effect of selection favoring integration of functionally interacting characters, achieved by the molding of these proximal causes. Strong and direct interactions among successive teeth of a molar row are predicted by genetic and developmental evidences. Functional constraints related to occlusion, however, should have selected more strongly for a morphological integration of occluding teeth and a corresponding evolution of the underlying developmental and genetic pathways. To investigate how these predictions match the patterns of phenotypic integration, we studied the co‐variation among the six molars of the murine molar row, focusing on two populations of house mice (Mus musculus domesticus) and wood mice (Apodemus sylvaticus). The size and shape of the three upper and lower molars were quantified and compared. Our results evidenced similar patterns in both species, size being more integrated than shape among all the teeth, and both size and shape co‐varying strongly between adjacent teeth, but also between occluding teeth. Strong co‐variation within each molar row is in agreement with developmental models showing a cascade influence of the first molar on the subsequent molars. In contrast, the strong co‐variation between molars of the occluding tooth rows confirms that functional constraints molded patterns of integration and probably the underlying developmental pathways despite the low level of direct developmental interactions occurring among molar rows. These patterns of co‐variation are furthermore conserved between the house mouse and the wood mouse that diverged >10 Ma, suggesting that they may constitute long‐running constraints to the diversification of the murine rodent dentition.     

Spatial constraints within the chlamydial host cell inclusion predict interrupted development and persistence

Background  

The chlamydial developmental cycle involves the alternation between the metabolically inert elementary body (EB) and the replicating reticulate body (RB). The triggers that mediate the interchange between these particle types are unknown and yet this is crucial for understanding basic Chlamydia biology.     

Mutations within the S4-S5 linker alter voltage sensor constraints in hERG K+ channels

Human ether-a-go-go related gene (hERG) channel gating is associated with slow activation, yet the mechanistic basis for this is unclear. Here, we examine the effects of mutation of a unique glycine residue (G546) in the S4-S5 linker on voltage sensor movement and its coupling to pore gating. Substitution of G546 with residues possessing different physicochemical properties shifted activation gating by ∼−50 mV (with the exception of G546C). With the activation shift taken into account, the time constant of activation was also accelerated, suggesting a stabilization of the closed state by ∼1.6-4.3 kcal/mol (the energy equivalent of one to two hydrogen bonds). Predictions of the α-helical content of the S4-S5 linker suggest that the presence of G546 in wild-type hERG provides flexibility to the helix. Deactivation gating was affected differentially by the G546 substitutions. G546V induced a pronounced slow component of closing that was voltage-independent. Fluorescence measurements of voltage sensor movement in G546V revealed a slow component of voltage sensor return that was uncoupled from charge movement, suggesting a direct effect of the mutation on voltage sensor movement. These data suggest that G546 plays a critical role in channel gating and that hERG channel closing involves at least two independently modifiable reconfigurations of the voltage sensor.     

Phenotypic constraints and community structure: Linking trade‐offs within and among species

Trade‐offs are central to many topics in biology, from the evolution of life histories to ecological mechanisms of species coexistence. Trade‐offs observed among species may reflect pervasive constraints on phenotypes that are achievable given biophysical and resource limitations. If so, then among‐species trade‐offs should be consistent with trade‐offs within species. Alternatively, trait variation among co‐occurring species may reflect historical contingencies during community assembly rather than within‐species constraints. Here, we test whether a key trade‐off between relative growth rate (RGR) and water‐use efficiency (WUE) among Sonoran Desert winter annual plants is apparent within four species representing different strategies in the system. We grew progeny of maternal families from multiple populations in a greenhouse common garden. One species, Pectocarya recurvata, displayed the expected RGR–WUE trade‐off among families within populations. For other species, although RGR and WUE often varied clinally among populations, among‐family variation within populations was lacking, implicating a role for past selection on these traits. Our results suggest that a combination of limited genetic variation in single traits and negative trait correlations could pose constraints on the evolution of a high‐RGR and high‐WUE phenotype within species, providing a microevolutionary explanation for phenotypes that influence community‐level patterns of abundance and coexistence.     

Effects of light availability versus hydraulic constraints on stomatal responses within a crown of silver birch

Responses of leaf conductance (g_L) to variation in photosynthetic photon flux density (Q_P), leaf-to-air vapour pressure difference (VPD), bulk leaf water potential (_x), and total hydraulic conductance (G_T) were examined in silver birch (Betula pendula Roth) with respect to leaf position in the crown. To reduce limitations caused by insufficient water supply or low light availability, experiments were also performed with branchlets cut from two different canopy layers. The intact upper-canopy leaves demonstrated 1.8–2.0 times higher (P<0.001) daily maxima of g_L compared with the lower-canopy leaves growing in the shadow of upper branches. In the morning, g_L in the shade foliage was primarily constrained by low light availability, in the afternoon, by limited water supply. Leaf conductance decreased when _x fell below certain values around midday, while the sun foliage experienced greater negative water potentials than the shade foliage. Midday stomatal openness was controlled by leaf water status and temperature, rather than by transpiration rate (E) via the feedforward mechanism. Mean G_T was 1.7 times higher (P<0.001) for the upper-canopy foliage compared to that of the lower canopy. At least 34–39% of the total resistance to the water flow from soil up to the shade foliage, and 54% up to the sun foliage, resided in 30-cm distal parts of the branches. Artificial reduction of hydraulic constraints raised _x and made g_L less sensitive to changes in both atmospheric and plant factors. Improved water supply increased g_L and E in the lower-canopy foliage, but not in the upper-canopy foliage. The results support the idea that leaves in the lower canopy are hydraulically more constrained than in the upper canopy.     

Exploration of pairing constraints identifies a 9 base-pair core within box C/D snoRNA-rRNA duplexes

2'-O-ribose methylation of eukaryotic ribosomal RNAs is guided by RNA duplexes consisting of rRNA and box C/D small nucleolar (sno)RNA sequences, the methylated sites invariably mapping five positions apart from the D box. Here we have analyzed the RNA duplex pairing constraints by investigating the features of 415 duplexes from the fungus, plant and animal kingdoms, and the evolution of those duplexes within the 124 sets they group into. The D-box upstream 1st and >or=15th positions consist of Watson-Crick base-pairs, G:U base-pairs and mismatched bases with ratios close to random assortments; these positions display single base differences in >60% of the RNA duplex sets. The D-box upstream 2nd to 11th positions have >90% Watson-Crick base-pairs; they display single base mutations with a U-shaped distribution of lower values of 0% and 1.6% at the methylated site 5th and 4th positions, and double compensatory mutations leading to new Watson-Crick base-pairs with an inverted U-shaped distribution of higher values at the 8th to 11th positions. Half of the single mutations at the 3rd to 11th positions resulted in G:U base-pairing, mainly through A-->G mutations in the rRNA strands and C-->T mutations in the snoRNA strands. Double compensatory mutations at the 3rd to 11th positions are extremely frequent, representing 36% of all mutations; they frequently arose from an A-->G mutation in the rRNA strands followed by a T-->C mutation in the snoRNA strands. Differences in the mutational pathways through which the rRNA and snoRNA strand evolved must be related to differences in the rRNA and snoRNA copy number and gene organization. Altogether these data identify the D-box upstream 3rd to 11th positions as box C/D snoRNA-rRNA duplex cores. The impact of the pairing constraints on the evolution of the 9 base-pair RNA duplex cores is discussed.     

Development of a novel MATLAB-based framework for implementing mechanical joint stability constraints within OpenSim musculoskeletal models

The Static Optimization (SO) solver in OpenSim estimates muscle activations and forces that only equilibrate applied moments. In this study, SO was enhanced through an open-access MATLAB interface, where calculated muscle activations can additionally satisfy crucial mechanical stability requirements. This Stability-Constrained SO (SCSO) is applicable to many OpenSim models and can potentially produce more biofidelic results than SO alone, especially when antagonistic muscle co-contraction is required to stabilize body joints. This hypothesis was tested using existing models and experimental data in the literature. Muscle activations were calculated by SO and SCSO for a spine model during two series of static trials (i.e. simulation 1 and 2), and also for a lower limb model (supplementary material 2). In simulation 1, symmetric and asymmetric flexion postures were compared, while in simulation 2, various external load heights were compared, where increases in load height did not change the external lumbar flexion moment, but necessitated higher EMG activations. During the tasks in simulation 1, the predicted muscle activations by SCSO demonstrated less average deviation from the EMG data (6.8% −7.5%) compared to those from SO (10.2%). In simulation 2, SO predicts constant muscle activations and forces, while SCSO predicts increases in the average activations of back and abdominal muscles that better match experimental data. Although the SCSO results are sensitive to some parameters (e.g. musculotendon stiffness), when considering the strategy of the central nervous system in distributing muscle forces and in activating antagonistic muscles, the assigned activations by SCSO are more biofidelic than SO.     

Diversity of benthic macrofauna in the eastern English Channel: comparison among and within communities

The diversity of benthic macrofaunal assemblages in the eastern English Channel is described from 707 samples collected with a Rallier-du-Baty dredge during 1971–1975. Four assemblages were primarily defined by means of multivariate data analyses and clustering methods: the Abra alba community, the Ophelia borealis community, the pebbles community and a mixed assemblage of the first three communities. Spatial heterogeneity of these communities is significantly correlated with sedimentary characteristics, although local variability appears to be controlled by both physical and biological processes. Ecological diversity of these communities was analysed considering species richness (S), the Shannon diversity index (H), and rank-frequency diagrammes (RFD). These analyses were performed at two spatial scales: for a single sample, and for a 'site of 10 pooled samples. Thus, several sites were chosen in order to compare diversity patterns and species quantitative structure among and within the communities. The greatest species richness was recorded for the pebbles (57–69) and the A. alba (63–79) communities. In the former, high values may be due to the complexity of microhabitats and the large flux of food related to strong currents. In the latter, both organic matter and terrestrial inputs associated with the mud favour the presence of deposit-feeder organisms. No clear trend was observed among and within the community sites in terms of the species quantitative structure. Thus, convex RFD shapes were observed in three assemblages: the mixed assemblage (offshore site), the A. alba (North Sea), and the pebbles (Normandy coast). Sigmoid shapes were observed in the pebbles (Dover Strait) and A. alba (English coast) communities. Presumably, these shapes can be caused by the combined action of physical (strong currents, substrate stability, mud content in the sediments) and biological factors (co-occurrence of species from different communities, strong species recruitment, relative dominance of carnivorous species).