Poly(A) Polymerase from Vaccinia Virus-Infected Cells II. Product and Primer Characterization

The product of the in vitro reaction of a vaccinia virus-induced poly(A) polymerase (see preceding paper) with ATP is shown to be poly(A) by nuclease resistance and by annealing with poly(U). Polyacrylamide gel electrophoresis indicates that the in vitro synthesized poly(A) is associated with large RNA which is sensitive to RNase. RNA which co-purifies with the virus-induced enzyme is similar to vaccinia virus-specific RNA with respect to size and poly(A) content. Double labeling studies indicate that the RNA which co-purifies with the enzyme becomes associated with the poly(A) synthesized in vitro. The poly(A) formed in vitro is located on the 3′-OH terminus of this RNA. During in vitro poly(A) synthesis ³²P from α-[³²P]ATP is transferred to nucleosides other than 2′,3′-AMP, primarily to CMP. Inclusion of poly(U) in the in vitro reactions results in an increase in the transfer of ³²P to UMP.     

Purification and Properties of Poly(A) Polymerase from Vigna unguiculata

Poly(A) polymerase was purified from germinating Vigna unguiculataseeds by successive column chromatography on phosphocellulose,Toyopearl HW-55S, heparin-Sepharose and TSKgel phenyl-5PW, whichyielded two activity fractions. The first fraction was purifiedas a single polypeptide with a mol wt of 63,000 as estimatedby SDS-PAGE. The enzyme activity was highly specific for ATPand required Mn²⁺ ion; an ATP-Mn complex may be the actual substrate.The polymerization reaction required a primer, with varioustypes of RNAs, poly(A) as well as dinucleoside phosphates having3'—OH, serving as efficient primers. The two forms ofthe enzyme had very similar properties with respect to divalentcation requirement and dependency on ion strength, but theyshowed some difference in primer preference. (Received March 4, 1988; Accepted May 2, 1988)     

Isolation and Characterization of an RNA-Dependent RNA Polymerase from Black Beetle Virus-Infected Drosophila melanogaster Cells

Crude lysates of black beetle virus (BBV)-infected cells of Drosophila melanogaster contain an RNA-dependent RNA polymerase activity not detectable in uninfected cells. The activity (designated BBV polymerase) sedimented at 20,000 × g, indicating an association with particulate material. It was solubilized from the pellet by sonication in a magnesium-deficient buffer. Differential centrifugation resulted in a 43-fold purification with 84% recovery of polymerase activity. The effects of divalent and monovalent cations, time, temperature, and pH on the activity of the partially purified polymerase were examined. RNA synthesis was not stimulated by the addition of exogenous BBV RNA, suggesting that an enzyme-template complex existed. Analysis of the RNA products of the RNA polymerase reaction indicated that full-length “negative” strand BBV RNAs were synthesized.     

Isolation and Properties of an RNA Polymerase from Influenza Virus-Infected Cells

Structures with RNA polymerase activity were isolated from influenza virus-infected cells, and consisted of ribonucleoprotein (RNP) complexes, similar in morphology to the viral internal component or nucleocapsid. The isolation procedure involved fractionation of infected cells in a discontinuous sucrose gradient, in which enzyme activity was concentrated in a fraction of intermediate density which contains both smooth and rough cytoplasmic membranes. The RNPs with polymerase activity were further purified in a velocity gradient, after which the peak fractions showed a 35-fold purification of the polymerase activity when compared with cytoplasmic extracts. The NP polypeptide, which is the subunit of the virion RNP, was the only virus-specific polypeptide detected in these RNP structures.     

Terminal Riboadenylate Transferase: a Poly A Polymerase in Purified Vaccinia Virus

Purified vaccinia virus treated with Triton X-100 catalyzes the incorporation of ATP into an acid-insoluble product. The enzymatic activity responsible for the ATP polymerization is demonstrated to be different from vaccinia RNA polymerase in its preferential use of ATP as substrate and on the basis of heat stability, pH optima, and metal ion requirement. The ATP polymerization reaction is stimulated 10-fold by the addition of rA(pA)(5.) In accordance with our earlier terminology, we call this Mn(2+)-dependent enzyme terminal riboadenylate transferase to distinguish it from Mg(2+)-dependent poly A polymerase.     

Relationship Between the RNA Polymerase Activities from Influenza Virions and Influenza Virus-Infected Cells

Two RNA polymerase activities were characterized in the cytoplasm of influenza Ao/NWS infected cells. Their relationship to the virion-associated RNA polymerase was studied.     

Immunochemical Procedure for Partial Purification of Newly Synthesized Proteins in Polyoma Virus-Infected Mouse Cells

A broad-spectrum antiserum has been obtained against nuclear proteins from normal mouse fibroblasts. Solid phase immunoadsorbants prepared from the serum specifically bind the corresponding antigens. The removal in this way of a significant fraction of host proteins leads to partial purification of viral and virus-induced polypeptides from polyoma virus-infected cell extracts. Four main peptides can be selected, with respective molecular weights of 90,000, 70,000, 46,000, and 41,000.     

A Novel Hydroxyproline-Deficient Arabinogalactan Protein Secreted by Suspension-Cultured Cells of Daucus carota (Purification and Partial Characterization)

Arabinogalactan proteins (AGPs) are secreted or membrane-associated glycoproteins that have been operationally defined as binding to [beta]-glucosyl Yariv artificial antigen, being rich in arabinose and galactose, and containing high levels of alanine, serine, and hydroxyproline. Using an anti-AGP monoclonal antibody (MAC 207) bound to cyanogen bromide-activated Sepharose 4B, we have purified by immunoaffinity chromatography an extracellular AGP from the culture medium of suspension-cultured cells of carrot (Daucus carota). The apparent molecular mass of this highly glycosylated proteoglycan is 70 to 100 kD as judged by sodium dodecyl sulfate-polyacrylamide gels. Although its sugar analysis, [beta]-glucosyl Yariv binding, and high alanine, serine, and proline content are consistent with it being an AGP, the amino acid composition unexpectedly revealed this molecule to have no detectable hydroxyproline. This suggests that this glycoprotein is not a "classical" AGP, but represents the first example of a new class of hydroxyproline-poor AGPs. Deglycosylation of the AGP with anhydrous hydrogen fluoride revealed that the purified proteoglycan contains probably a single core protein with an apparent molecular mass of 30 kD. Direct visualization of the native AGP in the electron microscope showed ellipsoidal putative AGP monomers, approximately 25 nm by 15 nm, that showed a strong tendency to self assemble into higher-order structures. Upon desiccation, the glycosylated AGP formed paracrystalline arrays visible in the light microscope. Polarized Fourier transform infrared microspectroscopy of these arrays demonstrated a high degree of polarization of the sugar moieties under these conditions. These results put possible constraints on current models of AGP structure; a putative role for these novel AGPs as pectin-binding proteins is discussed.     

Purification and Characterization of RNA Polymerase from Fremyella diplosiphon

We have purified and characterized a DNA-dependent RNA polymerase from the blue-green alga Fremyella diplosiphon. This enzyme, purified by gel filtration, DEAE-cellulose chromatography, and glycerol gradient centrifugation, is comprised of five polypeptide subunits. Their masses are 161,000, 134,000, 91,000, 72,000, and 41,000 daltons. Preparative electrophoresis of the purified enzyme on nondenaturing gels separates the 41,000-dalton polypeptide from the rest of the enzyme. The enzyme is extremely labile in the presence of a variety of salts of strong acids and bases; the purification procedure was devised to avoid exposure to such compounds.     

多ADP-核糖聚合酶家族

分离鉴定多功能的核基质蛋白及核基质结合蛋白是目前核基质研究的一个重要领域。通过与转录因子、核基质结合元件以及DNA间相互作用,核基质结合蛋白在DNA复制、转录、加工修饰等细胞内事件中起着支持和调节的作用。多ADP-核糖聚合酶[poly(ADP—ribose)polymerase,PARP]是一种高度保守的核基质结合蛋白,在多种活动例如基因组损伤修复、细胞凋亡、信号转导、基因表达调控中都发挥着调节的功能。PARP的潜在生物学功能已越来越引起国内外研究人员的关注。     

Identification,Characterization, and Partial Purification of Glucoamylase from Aspergillus Niger (Syn A. Ficuum) NRRL 3135

Abstract

The crude extracellular extract of Aspergillus niger (syn A. ficuum) NRRL 3135 contains glucoamylase (exo-1,4-α-D-glucanohydrolase, EC 3.2.1.2). The enzyme, a glycoprotein, was purified 7-fold by ion-exchange chromatography, chromatofocusing, and conconavalin A affinity chromatography. The molecular weight of the enzyme was estimated to be 90 kDa by SDS-PAGE and gel permeation chromatography. The pI of the enzyme was 3.4. The temperature optimum of the enzyme was 60°C and the pH optimum was 5.0. The V_max values for soluble starch, maltose, maltotriose, maltotetraose, maltopentaose, and isomaltose were 55.2, 11.7, 32.3, 47.8, 59.2, 12.5 nKat glucose/sec, respectively and the K_m values for the same substrates were 0.09%, 0.67 mM, 0.76 mM, 0.76 mM, 0.68 mM, and 122.01 mM, respectively.     

香灰菌凝集素的纯化及其部分性质

香灰菌菌丝体经磷酸缓冲液抽提、20%-70%饱和浓度的硫酸铵沉淀、DEAE-Cellulose和SephadexG-100柱层析纯化得到香灰菌凝集素(Hypoxylonsp.lectin,简称HSL)。HSL经PAGE检测为单一蛋白条带,SDS-PAGE测得其亚基分子量为15.9kD。过碘酸-Schiff染色法表明HSL为一种糖蛋白,糖基的含量为15.5%,β-消去反应测得其糖和蛋白质的连接键为O-型糖肽键。HSL能凝集多种动物红细胞和人的红细胞,在所测试的红细胞中,对兔红细胞的凝集作用最强。HSL对热较敏感,经50°C处理10min,其凝集活性明显降低,其在碱性环境中较稳定,而在酸性环境中较不稳定。HSL的凝集活性受Al3+、Fe3+、Ca2+和Zn2+等阳离子的影响。对鼠红细胞的凝集作用可被半乳糖和乳糖所抑制。     

虎纹捕鸟蛛毒液中透明质酸酶的纯化和部分性质的研究

用分子筛（岛津ＤＩＯＬ－１５０柱）和阳离子交换（岛津ＷＣＸ－１柱）高效液相色谱从虎纹捕鸟蛛（Ｓｅｌｅｎｏｃｏｓｍｉａｈｕｗｅｎａ）毒液中分离提纯透明质酸酶（Ｈｙａｌｕｒｏｎｉｄａｓｅ,ＥＣ３．２．１．３５）．经等电聚焦电泳为一条带,ｐＩ＝７．２．经ＳＤＳ－聚丙烯酰胺凝胶电泳测得分子量为４０ｋＤ,经凝胶过滤测得分子量为４０．７ｋＤ。以透明质酸为底物时在ｐＨ３．５─５．５范围内有较大活性,最适ｐＨ值为４．０;在ｐＨ４．５─６．０范围内稳定,在反应温度为３０─６０℃时有较大活性,最适温度为５０℃;对热稳定,０．１５ｍｏｌ／Ｌ的ＮａＣｌ对酶活性有一定的稳定作用．３％的肝素、５００μｍｏｌ／Ｌ的Ｈｇ~（２＋）、Ｆｅ~（２＋）、Ｃｕ~（２＋）对酶活性有明显的抑制作用。     

Partial Purification and Characterization of Cystine Lyase from Cabbage (Brassica oleracea var capitata)

Cabbage (Brassica oleracea var capitata) leaves were used as a source of cystine lyase. Diethylaminoethyl-cellulose chromatography resolved two peaks of activity, designated I and II.     

Partial Purification and Characterization of the Gibberellin A(20) 3beta-Hydroxylase from Seeds of Phaseolus vulgaris

The GA₂₀ 3β-hydroxylase present in immature seeds of Phaseolus vulgaris has been partially purified and characterized. The physical characteristics of the enzyme are similar to those of the GA 2β-hydroxylases present in mature and immature seeds of Pisum sativum. It is acid-labile, hydrophobic, and of M_r 45,000. The enzyme catalyzes the synthesis of GA₁, GA₅, and GA₂₉ from GA₂₀. Activity is dependent upon the presence of Fe²⁺, ascorbate, 2-oxoglutarate, and oxygen. 2-Oxoglutarate does not function as a cosubstrate; in the presence of the enzyme, succinate is not a reaction product.     

Pyruvate Decarboxylase from Zea mays L. : I. Purification and Partial Characterization from Mature Kernels and Anaerobically Treated Roots

Pyruvate decarboxylase (PDC) was purified from mature, dry maize kernels and from roots of anaerobically treated maize seedlings and partially characterized. PDC was purified to a specific activity of 96 units per milligram protein from kernels and to 41 units per milligram protein from root. The subunit molecular masses were estimated to be 61,000 and 60,000 for kernel PDC and 59,000 and 58,000 for root PDC. The pH optimum for each enzyme was 5.8. Since the pH optimum is nearly one pH unit below the value reported for the cytoplasm of anaerobically metabolizing maize roots (pH 6.7 ± 0.2), we investigated the effects of pH 5.8 and 6.6 on the cooperative kinetics observed for PDC from each source. The maximum Hill coefficients (n_H) were much greater at each pH for the kernel PDC (pH 5.8, n_H = 2.5 and pH 6.6, n_H = 3.2) than for the root PDC (pH 5.8, n_H = 1.4 and pH 6.6, n_H = 1.8). The cooperative kinetics observed with respect to pyruvate were asymmetric. Potassium inhibited maize PDC and was competitive with pyruvate (root PDC K_i = 16 millimolar and kernel PDC K_i = 10 millimolar).     

Purification and cDNA Cloning of Maize Poly(ADP)-Ribose Polymerase

Poly(ADP)-ribose polymerase (PADPRP) has been purified to apparent homogeneity from suspension cultures of the maize (Zea mays) callus line. The purified enzyme is a single polypeptide of approximately 115 kD, which appears to dimerize through an S-S linkage. The catalytic properties of the maize enzyme are very similar to those of its animal counterpart. The amino acid sequences of three tryptic peptides were obtained by microsequencing. Antibodies raised against peptides from maize PADPRP cross-reacted specifically with the maize enzyme but not with the enzyme from human cells, and vice versa. We have also characterized a 3.45-kb expressed-sequence-tag clone that contains a full-length cDNA for maize PADPRP. An open reading frame of 2943 bp within this clone encodes a protein of 980 amino acids. The deduced amino acid sequence of the maize PADPRP shows 40% to 42% identity and about 50% similarity to the known vertebrate PADPRP sequences. All important features of the modular structure of the PADPRP molecule, such as two zinc fingers, a putative nuclear localization signal, the automodification domain, and the NAD⁺-binding domain, are conserved in the maize enzyme. Northern-blot analysis indicated that the cDNA probe hybridizes to a message of about 4 kb.     

多聚ADP-核糖聚合酶抑制剂对高浓度锌损伤 PC12细胞的保护作用

探讨多聚ADP-核糖聚合酶(PARP)抑制剂3-氨基苯甲酰胺(3-AB)对400μmo1/L氯化锌损伤PC12细胞的保护作用及其对锌造成的细胞死亡类型的影响.应用MTT法,免疫细胞化学和Western印迹分别测定PC12细胞的存活率和PARP活性;用Hoechst 33342/PI荧光双染色、膜联蛋白V结合实验及DNA断裂分析等方法检测细胞死亡类型.结果表明在400μmol/L氯化锌的作用下,细胞存活率降至(22.7±4.6)%,PARP活性增强,坏死、凋亡和正常细胞百分比分别为(58.4±6.3)%、(18.0±5.6)%及(23.6±4.2)%;3-AB使细胞存活率提高至(76.9±4.7)%,PARP活性减弱,坏死细胞百分数降至(19.2±5.2)%,而正常和凋亡细胞百分数增加到(43.3±1.9)%和(37.5±6.5)%.实验证明,PARP参与了高浓度锌诱导的PC12细胞损伤,抑制PARP活性可提高细胞的存活率,而这种保护作用在于减少细胞的坏死而非凋亡.