Chemical evolution 40. clay-mediated oxidation of diaminomaleonitrile

Summary The previously reported inhibition of the oligomerization of HCN by montmorillonite clays was investigated. The inhibition is due to the oxidation of diaminomaleonitrile (DAMN) by the Fe³⁺ in the clay lattice. Fe²⁺ and oxalic acid were shown to be the reaction products. From these reaction products and the previous report that two equivalents of HCN are formed per equivalent ofDAMN, it was established that diiminosuccinonitrile (DISN) is the initial reaction product, which is rapidly hydrolyzed to oxalic acid and HCN. The same oxidative transformations are effected by Fe³⁺ bound to Dowex 50, Fe³⁺ in solution and Ni(NH₃)₆ ²⁺. The rate of reaction of DAMN decreased in the order Fe³⁺ > Fe³⁺-Dowex > montmorillonite, indicating no catalytic role for the clay in the oxidation of DAMN. Little reaction of DAMN was observed with montmorillonite in which the bulk of the iron was in the Fe²⁺ oxidation state. The possible significance of these redox reactions to chemical evolution is discussed.For the previous papers in this series see Ferris JP, Alwis KW, Edelson EH, Mount N, Hagan Jr J (1980) Origin of Life Wolman Y (ed) Reidel, Dordrecht, p 125–128 Ferris JP, Edelson EH, Auyeung JM, Joshi PC (1981) J Mol Evol 17:69-77     

Structural studies on HCN oligomers

Summary NMR spectral studies on the HCN oligomers suggest the presence of carboxamide and urea groupings. The release of CO₂, H₂O, HCN, CH₃CN, HCONH₂ and pyridine on pyrolysis is consistent with the presence of these groupings as well as carboxylic acid groups. No basic primary amine groupings could be detected with fluorescamine. Hydrazinolysis of the HCN oligomers releases 10% of the amino acids normally released by acid hydrolysis. The oligomers give a positive biuret test but this is not due to the presence of peptide bonds. There is no conclusive evidence for the presence of peptide bonds in the HCN oligomers. No diglycine was detected on partial hydrolysis of the HCN oligomers at pH 8.5 suggesting that HCN oligomers were not a source of prebiotic peptides.Chemical Evolution 38. For the previous papers see Ferris JP, Rao RV, Newton TA (1979). J Org Chem 44:4378–4381, 4381–4385; Ferris JP, Edelson EH, Mount NM, Sullivan AE (1979) J Mol Evol 13:317–330     

The Cold Origin of Life: A. Implications Based On The Hydrolytic Stabilities Of Hydrogen Cyanide And Formamide

It has been suggested that hydrogen cyanide(HCN) would not have been present in sufficient concentrationto polymerize in the primitive ocean to produce nucleic acidbases and amino acids. We have measured the hydrolysis ratesof HCN and formamide over the range of 30–150 °C and pH 0–14,and estimated the steady state concentrations in theprimitive ocean. At 100 °C and pH 8, the steady stateconcentration of HCN and formamide were calculated to be7 × 10^-13 M and 1 × 10^-15 M, respectively. Thus, itseems unlikely that HCN could have polymerized in a warmprimitive ocean. It is suggested that eutectic freezing mighthave been required to have concentrated HCN sufficiantly forit to polymerize. If the HCN polymerization was important forthe origin of life, some regions of the primitive earth mighthave been frozen.     

Hcn and Hnc in Comets C/2000 Wm1 (Linear) and C/2002 C1 (Ikeya-Zhang)

Comets have been suggested as a possibly significant source of organic molecules to the early Earth. Hydrogen cyanide (HCN) is important in models of prebiotic chemistry, but may be difficult to form in the early terrestrial environment, while hydrogen isocyanide (HNC) is a `classical' tracer of interstellar ion-molecule chemistry. We have observed both HCN and HNC in 2 recent comets, bringing the number of comets with published measurements of the HNC/HCN abundance ratio to 6. The HNC/HCN ratio in comet Ikeya-Zhang appears to increase with decreasing heliocentric distance, as was previously observed for comet Hale-Bopp, indicating that the HNC is produced at least in part by processes in the cometary coma (atmosphere) and is not simply a constituent of the nuclear ices. Both comets C/2000 WM1 (Linear) and C/2002 C1 (Ikeya-Zhang) exhibit values of the HNC/HCN ratio that appear to be too large (0.09–0.19) tobe matched by current models of coma chemistry. Cometary HNC maybe a photodissociation product of organic grains or large organic polymers stored in the nucleus. We have also set a limit on the emission from the NO radical in comet WM1.     

Simultaneous determination of cyanide and thiocyanate in blood by ion chromatography with fluorescence and ultraviolet detection

An ion chromatographic method for the simultaneous determination of cyanide and thiocyanate in blood has been developed. After extraction by adding water and methanol to blood, cyanide was derivatized with 2,3-naphthalenedialdehyde and taurine to give a fluorescent product of 1-cyanobenz[f]isoindole. This compound was detected with high sensitivity by fluorometry and the underivatized thiocyanate was detected by ultraviolet absorption. The detection limits were 3.8 pmol ml⁻¹ for cyanide and 86 pmol ml⁻¹ for thiocyanate, and the recoveries from blood were ca. 83% and ca. 100%, respectively. The proposed method was successfully applied to the analysis of both anions in blood from smokers, non-smokers and fire victims.     

New Insights into the Characterization of ‘Insoluble Black HCN Polymers’

The data presented here provide a novel contribution to the understanding of the structural features of HCN polymers and could be useful in further development of models for prebiotic chemistry. The interpretation of spectroscopic and analytical data, along with previous results reported by other authors, allowed us to propose a mechanism for the aqueous polymerization of HCN from its primary and simplest isolated oligomer, the diaminomaleonitrile (DAMN) tetramer. We suggest that ‘insoluble black HCN polymers’ are formed by an unsaturated complex matrix, which retains a significant amount of H₂O and important bioorganic compounds or their precursors. This polymeric matrix can be formed by various motifs of imidazoles and cyclic amides, among others. The robust formation of HCN polymers assayed under several conditions seems to explain the plausible ubiquity of these complex substances in space.     

Cyanide as a copper and quinone-directed inhibitor of amine oxidases from pea seedlings (<Emphasis Type="Italic">Pisum sativum</Emphasis>) and<Emphasis Type="Italic"> Arthrobacter globiformis</Emphasis>: evidence for both copper coordination and cyanohydrin derivatization of the quinone cofactor

The interactions of cyanide with two copper-containing amine oxidases (CuAOs) from pea seedlings (PSAO) and the soil bacterium Arthrobacter globiformis (AGAO) have been investigated by spectroscopic and kinetic techniques. Previously, we rationalized the effects of azide and cyanide for several CuAOs in terms of copper coordination by these exogenous ligands and their effects on the internal redox equilibrium TPQ_amr-Cu(II)TPQ_sq-Cu(I). The mechanism of cyanide inhibition was proposed to occur through complexation to Cu(I), thereby directly competing with O₂ for reoxidation of TPQ. Although cyanide readily and reversibly reacts with quinones, no direct spectroscopic evidence for cyanohydrin derivatization of TPQ has been previously documented for CuAOs. This work describes the first direct spectroscopic evidence, using both model and enzyme systems, for cyanohydrin derivatization of TPQ. K_d values for Cu(II)-CN^– and Cu(I)-CN^–, as well as the K_i for cyanide inhibition versus substrate amine, are reported for PSAO and AGAO. In spite of cyanohydrin derivatization of the TPQ cofactor in these enzymes, the uncompetitive inhibition of amine oxidation is determined to arise almost exclusively through CN^– complexation of Cu(I).Abbreviations AGAO Arthrobacter globiformis amine oxidase - APAO Arthrobacter P1 amine oxidase - APT attached proton test - BPAO bovine plasma amine oxidase - CuAO quinone-copper containing amine oxidase - LTQ lysyl tyrosylquinone - MAO monoamine oxidase - PKAO porcine kidney amine oxidase - PPAO porcine plasma amine oxidase - PSAO pea seedling amine oxidase - TPQ 2,4,5-trihydroxyphenylalaninequinone - TPQ_amr TPQ aminoresorcinol - TPQ_imq TPQ iminoquinone - TPQ_ox TPQ oxidized - TPQ_sq TPQ semiquinone - WT wild-typeE.M. Shepard and G.A. Juda contributed equally to this workThis revised version was published online in February 2004: Hansenula polymorpha was not italicised at the end of the Introduction, Equation 3 appeared twice, and the resolution of Scheme 3 was insufficient.An erratum to this article can be found at     

Wood penetration ability of hydrogen cyanide and its efficacy for fumigation of Anoplophora glabripennis,Hylotrupes bajulus (Coleoptera), and Bursaphelenchus xylophilus (Nematoda)

Pinewood nematodes (Bursaphelenchus xylophilus) and Asian longhorned beetles (Anoplophora glabripennis) are the primary regulated pests for packaging wood and timber in the EU, while the house longhorned beetle (Hylotrupes bajulus) is the most important cosmopolitan pest of construction wood. Gaseous hydrogen cyanide (HCN) is one of the few fumigation alternatives to the banned ozone-depleting chemical methyl bromide (MBr). This study reports the results of HCN fumigation experiments in a hermetically sealed steel chamber regarding (1) the penetration and absorption rates of HCN in wooden blocks, and (2) the biological efficacy of HCN against the wood-infesting pests B. xylophilus (in sawdust), A. glabripennis, and H. bajulus (in wooden blocks). A concentration equilibrium for HCN (at 20 g m⁻³) between the fumigation chamber headspace and the center of the treated spruce blocks (100 × 100 × 120 mm) was reached after 48 h in the saturated atmosphere. A dose of 10 g m⁻³ in the center of the spruce blocks was reached for both saturated and non-saturated atmospheres after 24 h of fumigation. The wood tested absorbed approximately 40–45% of the HCN, until equilibrium was reached. The highest tested HCN dose (20 g m⁻³) led to 100% mortality of the A. glabripennis and H. bajulus larvae after less than 1 h of exposure. For 20 g m⁻³ and 1 h exposure the Ct product was <18.66 g*h/m³ for H. bajulus and <17.67 g*h/m³ for A. glabripennis. Hydrogen cyanide doses of 10 g m⁻³ and 20 g m⁻³ led to 100% B. xylophilus mortality in 40 and 18 h, respectively. For B. xylophilus the Ct product was <424.00 g*h/m³ for 20 °C and 10 g m⁻³ and <349.51 g*h/m³ for 25 °C and 20 g m⁻³. The initial results are promising in terms of establishing an alternative technology and protocol to MBr for timber fumigation.     

Calcium transport in dispersed acinar cells from rat pancreas

The present studies were performed to attempt to elucidate the basis for the discrepancy between results of Kondo and Schulz (1976, Biochim. Biophys Acta 419, 76–92), who found that cholecystokinin and cholinergic agents increase uptake of ⁴⁵Ca by dispersed acinar cells from rat pancreas, and results of others (Matthews, E.K., Petersen, O.H. and Williams, J.A. (1973) J. Physiol. 234, 689–701; Chandler, D.E. and Williams, J.A. (1974) J. Physiol. 243, 831–846; Case, R.M. and Clausen, T. (1973) J. Physiol. 235, 75–102; Gardner, J.D., Conlon, T.P., Klaeveman, H.L., Adams, T.D. and Ondetti, M.A. (1975) J. Clin. Invest. 56, 366–375; Christophe, J.P., Frandsen, E.K., Conlon, T.P., Krishna, G. and Gardner, J.D. (1976) J. Biol. Chem. 251, 4640–4645; Shelby, H.T., Gross, L.P., Lichty, P. and Gardner, J.D. (1976) J. Clin. Invest. 58, 1482–1493 and Deschodt-Lanckman, M., Robberecht, P., de Neef, P., Lammens, M. and Christophe, J. (1976) J. Clin. Invest. 58, 891–898). They have reported that cholecystokinin and cholinergic agents do not alter or cause a slight decrease in uptake of ⁴⁵Ca by pancreatic acinar cells. Our present results indicate that increased uptake of ⁴⁵Ca by acinar cells incubated with cholecystokinin occurs only in cells washed with iced, 160 mM choline chloride and reflects increased cellular uptake of radioactivity from the wash solution but not from the incubation medium. We detected no effect of cholecystokinin on uptake of ⁴⁵Ca by cells washed with 160 mM choline chloride containing 5 mM ethylenediaminetetraacetate or by cells washed with Krebs-Ringer bicarbonate. Furthermore, cells washed with 160 mM choline chloride accumulated a substantial amount of ⁴⁵Ca from the wash solution and this accumulation was increased in cells that had been preincubated with cholecystokinin. Cells washed with Krebs-Ringer bicarbonate did not take up ⁴⁵Ca from the wash solution.     

Radiation-induced polymerization in dilute aqueous solutions of cyanides

It has been found that the addition polymerization of cyanides (HCN and NH₄CN) takes place in dilute, O₂-free irradiated aqueous solutions, in addition to the abundant formation of various smaller molecules. A polymer with a molecular mass of 16,000 amu was found. Its abundance increases with initial cyanide concentration and absorbed dose and can be up to 31% of the total amount of radiolytic products. HPLC data also indicate the presence of two more products at 22,000 amu and 10,000 amu, which are less abundant by one order of magnitude. The same molecular masses appear throughout the examined range of cyanide concentration (0.001–0.2 mol dm^–3) and absorbed dose (2–200 kGy). They remain also at large doses (up to 1250 kGy) after a complete destruction of cyanide.     

Michaelis constant (K m ) of acid phospatase as affected by montmorillonite,illite, and kaolinite clay minerals

The influence of Ca homoionic clay minerals (montmorillonite, illite, and kaolinite) on the activity,K _m , andV _m values of acid phosphatase was examined in model experiments. At each substrate (p-nitrophenyl phosphate) level tested, the addition of increasing amounts of clays (50, 100, and 150 mg, respectively) decreased the activity and increased theK _m value from 1.43×10^–3 m PNP (in the soluble state) to 82.3×10^–3M (montmorillonite), 8.02×10^–3 m (kaolinite), and 7.65×10^–3 m (illite) at the 150 mg level. The maximum enzyme reaction velocity (V _m ) remained nearly constant at different amounts of kaolinite and illite, but increased remarkably with rising quantities of montmorillonite. Apparently, the substrate affinity of sorbed acid phosphatase is significantly lower with montmorillonite than with kaolinite or illite. This may be ascribed to an intensive sorption of both substrate and enzyme to the surface as well as to interlattice sites of montmorillonite.     

Phosphorus fixation in lake sediments using LaCl3-modified clays

Fourteen types of clay, including soils and sediments from Lake Taihu, were modified by LaCl₃, and their abilities of phosphorus (P) sorption (the total P up-taken) and fixation (the unleachable P retained in modified clays) were investigated. Results showed that P sorption rates of LaCl₃-modified clays were all higher than 90%, while the fixation rates were raised from 3–14% to 52–95%. Kaolinite was selected to study the pH effect on P sorption and desorption of La³⁺ from the modified clays. In the pH range of 4–8, P sorption on LaCl₃-modified kaolinite could reach over 80%, with a maximum of 97% at pH 5. The desorption rate of La³⁺ decreased with the increase of pH, which was lower than <0.006% at pH > 6.12. This study may provide a solution for internal P pollution from lake sediments.     

Montmorillonite: A multifunctional mineral catalyst for the prebiological formation of phosphate esters

Reaction of diiminosuccinonitrile (DISN) with 3'-AMP in the presence of alkali- and alkaline earth-montmorillonites results in the formation of 2',3'-cAMP in aqueous solution. Little or no 2', 3'-cAMP is produced when metal ion concentrations equivalent to that of the metal ion associated with the homoionic clays are used instead of mobntmorillionite. Yields comparable to those obtained with DISN are obtained when diaminomaleonitrile (DAMN) is used in place of DISN as the condensing agent. DAMN, a compound which is more stable than DISN in aqueous solution, is oxidized to DISN on the surface of the clay by Fe+3 in the clay lattice. DISN, the true condensing agent, is thus generated in the presence of the bound 3'-AMP on the montmorillonite surface. The montmorillonite catalyzes the DISN-mediated formation of 2', 3'-cAMP and this product, which binds much less strongly than does the 3'-AMP, is desorbed from the clay surface. This research established that the montmorillonite performs four different functions in its role as catalyst: (1) Binding one of the substrate molecules (3'-AMP) (2) Activating the second substrate (DAMN) (3) Catalyzing the formation of 2', 3'-cAMP (4) Releasing the reaction product so another substrate molecules can bind to the montmorillonite.     

Cyanide hydratase from Aspergillus niger K10: Overproduction in Escherichia coli,purification, characterization and use in continuous cyanide degradation

A cyanide hydratase from Aspergillus niger K10 was expressed in Escherichia coli and purified. Apart from HCN, it transformed some nitriles, preferentially 2-cyanopyridine and fumaronitrile. V_max and K_m for HCN were ca. 6.8 mmol min⁻¹ mg⁻¹ protein and 109 mM, respectively. V_max for fumaronitrile and 2-cyanopyridine was two to three orders of magnitude lower than for HCN (ca. 18.8 and 10.3 μmol min⁻¹ mg⁻¹, respectively) but K_m was also lower (ca. 14.7 and 3.7 mM, respectively). Both cyanide hydratase and nitrilase activities were abolished in truncated enzyme variants missing 18–34 C-terminal aa residues. The enzyme exhibited the highest activity at 45 °C and pH 8–9; it was unstable at over 35 °C and at below pH 5.5. The operational stability of the whole-cell catalyst was examined in continuous stirred membrane reactors with 70-mL working volume. The catalyst exhibited a half-life of 5.6 h at 28 °C. A reactor loaded with an excess of the catalyst was used to degrade 25 mM KCN. A conversion rate of over 80% was maintained for 3 days.     

Dielectric analysis of mitochondria isolated from rat liver I. Swollen mitoplasts as simulated by a single-shell model

A re-evaluation of the dielectric studies on isolated mitochondria (Pauly, H., Packer L., and Schwan, H.P. (1960) J. Biophys. Biochem. Cytol. 7, 589–601, and ibid. 7, 603–612) is presented. The suspensions of ‘mitoplasts’ prepared from rat liver mitochondria by a hyposmotic (10 mM KCI) treatment showed a dielectric dispersion with its characteristic frequency lying in the 1–100 MHz range. In the analysis of data special emphasis was put on the choice of the theoretical models to employ after serutiny of their applicability to the suspensions tested. As such we adopted the theory of Hanai et al. (Hanai, T., Asami, K., and Koizumi, N. (1979) Bull. Inst. Chem. Res., Kyoto Univ. 57, 297–305) that was advanced to include concentrated suspensions of shelled spheres. Curve fittings based on that theory resulted in a better agreement with experiment than the fittings based on a conventional theory for dilute suspensions. Major findings from our analyses on the swollen mitoplasts are that: (i) the limiting membrane of the mitoplasts has a specific electrical capacity of 1 μF/cm², (ii) the ratio of permittivity (or dielectric constant) for the mitoplast interior and permittivity for the external medium is 0.6–0.7, and (iii) the conductivity ratio between the interior phase and the medium is approx. 0.6. Reasons for discrepancy between the results of Pauly et al. and ours are discussed.     

The growth of a cyanide-utilising strain of Pseudomonas fluorescens in liquid culture on nickel cyanide as a source of nitrogen

Pseudomonas fluorescens strain NCIMB11764 is able to utilise cyanide as a source of nitrogen for growth. When KCN(≡ HCN) is the source of nitrogen it has to be supplied as the limiting nutrient in fed-batch cultures [1]. In this study it has been shown that metal-complexed cyanide, as nickel cyanide (Ni(CN)²⁻₄), can be used as the source of nitrogen when it is added directly to the growth medium in batch cultures. Ni(CN)²⁻₄ could also be used as the source of nitrogen in nitrogen-limited continuous cultures. In both batch and continuous cultures, growth on Ni(CN)²⁻₄ was associated with induction of cyanide oxygenase activity. An assay for cyanide has been developed utilising its binding to nickel.     

Cyanide catabolizing enzymes in Trichoderma spp.

An investigation was made into the occurrence and distribution of the enzymes involved in HCN catabolism in different strains of the fungus Trichoderma. Three enzymes, cyanide hydratase, rhodanese and β-cyanoalanine synthase were studied. All the strains showed a high capacity to degrade cyanide via both the cyanide hydratase and rhodanese pathways. β-Cyanoalanine synthase, however, was not observed in any of the strains. The enzyme activities were found in varying levels in each of the Trichoderma strains. Experiments conducted with cyanide addition to the medium to assess whether the enzymes were induced in the presence of cyanide failed to show any statistically significant increase. This suggests a constitutive nature of both the enzymes in all the selected strains of Trichoderma used in this study.     

Background levels of hydrogen cyanide in human breath measured by infrared cavity ring down spectroscopy

Hydrogen cyanide (HCN) in breath has been suggested as a diagnostic tool for cyanide poisoning and for cyanide-producing bacterial infections. To distinguish elevated levels of breath HCN, baseline data are needed. Background levels of HCN were measured in mixed exhaled air from 40 healthy subjects (26 men, 14 women, age 21–61 years; detection limit: 1.5?ppb; median: 4.4?ppb; range <1.5–14?ppb) by near-infrared cavity ring down spectroscopy (CRDS). No correlation was observed with smoking habits, recent meals or age. However, female subjects had slightly higher breath levels of HCN than male subjects. CRDS has not previously been used for this purpose.