Spatial dynamics of human-origin H1 influenza A virus in North American swine

The emergence and rapid global spread of the swine-origin H1N1/09 pandemic influenza A virus in humans underscores the importance of swine populations as reservoirs for genetically diverse influenza viruses with the potential to infect humans. However, despite their significance for animal and human health, relatively little is known about the phylogeography of swine influenza viruses in the United States. This study utilizes an expansive data set of hemagglutinin (HA1) sequences (n = 1516) from swine influenza viruses collected in North America during the period 2003-2010. With these data we investigate the spatial dissemination of a novel influenza virus of the H1 subtype that was introduced into the North American swine population via two separate human-to-swine transmission events around 2003. Bayesian phylogeographic analysis reveals that the spatial dissemination of this influenza virus in the US swine population follows long-distance swine movements from the Southern US to the Midwest, a corn-rich commercial center that imports millions of swine annually. Hence, multiple genetically diverse influenza viruses are introduced and co-circulate in the Midwest, providing the opportunity for genomic reassortment. Overall, the Midwest serves primarily as an ecological sink for swine influenza in the US, with sources of virus genetic diversity instead located in the Southeast (mainly North Carolina) and South-central (mainly Oklahoma) regions. Understanding the importance of long-distance pig transportation in the evolution and spatial dissemination of the influenza virus in swine may inform future strategies for the surveillance and control of influenza, and perhaps other swine pathogens.     

Reproductive ecology of three rare North American Pinguicula species

Pinguicula (Lentibulariaceae) is a genus of more than 100 carnivorous plant species. A handful of comprehensive studies have examined the reproductive ecology of these species, mostly in Europe and none in the USA. During 2013–2016 different aspects of the reproductive ecology of P. ionantha, P. lutea and P. planifolia were studied at multiple locations in the Florida Panhandle, USA. All three species are of conservation concern within the study region and some aspects of their reproductive ecology may be contributing to their rarity. For all species, we conducted breeding system studies investigating xenogamy vs. autogamy, self‐incompatibility vs. self‐compatibility, pollen:ovule ratios, flower phenology and longevity, and pollinator visitation, as well as fruit and seed set differences among populations. All three Pinguicula species were determined to be xenogamous and self‐compatible, although the pollen:ovule ratios were extremely low. In addition, these species have floral nastic movements and flower longevity that ranges from 2 to 3 weeks depending on the species. Hymenoptera was identified as the primary group of pollinators visiting all species, although observed visitation events were low. All three Pinguicula species had extremely high levels of fruit set and seed set. Worldwide, Pinguicula species share similar breeding system and reproductive patterns. The rare status of P. ionantha, P. lutea and P. planifolia is more likely due to their ecological requirements, demographics and/or patterns of genetic diversity, than reproduction. This work is among the first and most comprehensive associated with the reproductive ecology of North American Pinguicula.     

Reproductive ecology of female Oligocottus snyderi Greeley: a North American intertidal sculpin

The reproductive condition of female Oligocottus snyderi Greeley during 18+ months at Dillon Beach, California was examined. Seasonal differences in reproductive condition were identified by diameter measurements of ovarian follicles in pre-vitellogenic, cortical alveoli and vitellogenic stages of development which showed that female O. snyderi appeared capable of reproduction during 6 to 8 months of the year. Reproduction occurred from late autumn to early spring and it is likely that females reproduce more than once a year. Follicular development within the population was asynchronous; development within individual females was group synchronous. The percentage of females with vitellogenic follicles in each collection was negatively correlated with photoperiod and productivity and positively correlated with wave action. Conversely, the percentage of newly recruited individuals in each sample was positively correlated with photoperiod and productivity. It appears that reproduction and recruitment in O. snyderi are significantly influenced by annual productivity cycles; daylength changes may provide an anticipatory cue for the productivity cycle.     

Spatial Dynamics of Body Size Frequency Distributions for North American Squamates

Scale dependent patterns of body size frequency distributions (BSFDs) have been explained by competition and an evolutionarily optimal body size in mammals. We test these ideas in a vertebrate group that is a model for competition and evolutionary studies by assessing the scale-dependence of BSFDs. BSFDs (body size defined as maximum total length) of North American squamates were assembled for the entire continent, biomes within the continent and local habitat patches within biomes. We described these distributions using skewness, kurtosis, interquartile range (IQR), and an index of evenness. We compared these parameters among spatial scales using Kolmogorov–Smirnov tests and bootstrap simulations. We assessed the relationship between body size and species richness using correlations (Pearsons and Spearmans R). The North American BSFD is bimodal, with a primary mode (240 mm) corresponding to lizards and small snakes and a secondary mode (912 mm) to snakes. Squamate BSFDs varied in a scale dependent fashion for some biomes and local habitat patches for kurtosis (12% of local patches and 10% of biomes more platykurtic), skewness (30% of biomes skewed to the right) and IQR (12% of patches increased). The index of evenness of BSFDs did not vary with spatial scale. Body size of biomes and local habitat patches closely resembles the North American BSFD as species richness increases. We found limited statistical support for the scale-dependency of North American squamate BSFDs (only 12–30% of patches or biomes conformed to the predicted pattern). These results suggest that the mechanisms implicated in scale-dependent patterns of BSFDs for mammals, geographic turnover of modal-sized species and competition within local assemblages may be of diminished importance in squamates. As geographic turnover of modal-sized species is theoretically linked to an evolutionarily optimal body size, this may suggest that optimal size theory is not adequate to predict spatial scaling of BSFDs in squamates.     

Simulated dynamics of succession in a North American subtropical Prosopis savanna

Abstract. A transition matrix model was used to explore the dynamics, rate and potential extent of changes in landscape vegetation patterns on a southern Texas Prosopis savanna. Transitions between seven vegetation classes were determined for the periods 1941–1960 and 1960–1983 on aerial photographs of three sites. During these periods, the sites were heavily grazed by cattle and were fire-free. Vegetation states assessed in grids of 20 m x 20 m cells superimposed on photographs ranged from grass-dominated to woody plant-dominated. The 1941–1960 period (denoted DRY) was characterized by prolonged drought, whereas annual rainfall during the 1960–1983 period (denoted WET) was typically normal to above-normal. The 1941 landscape consisted of herbaceous zones (6% of cells), woodland (50% of cells) and savanna parkland (44% of cells with grass/woody plant mixtures). The woodland state was the most stable, with probabilities of no change being 0.970 and 0.873 in WET and DRY periods, respectively. The herbaceous state was least stable, with corresponding values of 0.074 and 0.353. Past and future landscape structure was modelled by randomly selecting DRY or WET transitions at 20 year time steps. The model was run under a series of rainfall scenarios where the probability of selecting the WET transition matrix (P[WET]) ranged from 0 (DRY always chosen) to 1 (WET always chosen). Historical records indicate P[WET] has approximated 0.3 to 0.4 in the region. The rate of succession to states of greater woody cover increased as P[WET] increased. Forward simulations based on P[WET] > 0.2 suggest the present landscape is unstable and will develop into a closed-canopy woodland within the next 180 years, assuming the processes operating between 1941 and 1983 continue (e.g. grazing by cattle and lack of fire). Reverse simulations concur with historical observations and projections derived from woody plant growth rates in other studies and suggest that 200 to 300 yr BP these landscapes contained a substantially greater proportion of cells dominated by grassland or grassland with scattered woody plants (43 to 74%) than was present in 1983 (19%). Based upon elapsed time between predicted past and future steady states, succession from open savanna to closed-canopy woodland may occur in ca. 400 to 500 yr for P(WET) ≥ 0.33. Arresting or reversing the projected trend may require changes in climate and/or changes in livestock grazing and land management practices. The approaches employed in this study illustrate how time series maps, aerial photographs and satellite imagery can be analyzed and used to interpret, project and reconstruct local and regional changes in ecosystem structure. Difficulties and limitations associated with the use of Markov chains to model succession are identified and discussed.     

Geographical gradients in the population dynamics of North American prairie ducks

1. Geographic gradients in population dynamics may occur because of spatial variation in resources that affect the deterministic components of the dynamics (i.e. carrying capacity, the specific growth rate at small densities or the strength of density regulation) or because of spatial variation in the effects of environmental stochasticity. To evaluate these, we used a hierarchical Bayesian approach to estimate parameters characterizing deterministic components and stochastic influences on population dynamics of eight species of ducks (mallard, northern pintail, blue-winged teal, gadwall, northern shoveler, American wigeon, canvasback and redhead (Anas platyrhynchos, A. acuta, A. discors, A. strepera, A. clypeata, A. americana, Aythya valisineria and Ay. americana, respectively) breeding in the North American prairies, and then tested whether these parameters varied latitudinally. 2. We also examined the influence of temporal variation in the availability of wetlands, spring temperature and winter precipitation on population dynamics to determine whether geographical gradients in population dynamics were related to large-scale variation in environmental effects. Population variability, as measured by the variance of the population fluctuations around the carrying capacity K, decreased with latitude for all species except canvasback. This decrease in population variability was caused by a combination of latitudinal gradients in the strength of density dependence, carrying capacity and process variance, for which details varied by species. 3. The effects of environmental covariates on population dynamics also varied latitudinally, particularly for mallard, northern pintail and northern shoveler. However, the proportion of the process variance explained by environmental covariates, with the exception of mallard, tended to be small. 4. Thus, geographical gradients in population dynamics of prairie ducks resulted from latitudinal gradients in both deterministic and stochastic components, and were likely influenced by spatial differences in the distribution of wetland types and shapes, agricultural practices and dispersal processes. 5. These results suggest that future management of these species could be improved by implementing harvest models that account explicitly for spatial variation in density effects and environmental stochasticity on population abundance.     

Analysis of Large-Scale Spatial Heterogeneity in Vegetation Indices among North American Landscapes

We analyzed the spatial heterogeneity in vegetation indices among 13 North American landscapes by using full Landsat Thematic Mapper images. Landscapes varied broadly in the statistical distribution of vegetation indices, but were successfully ordinated by using a measure of central tendency (the mean) and a measure of dispersion (the standard deviation or the coefficient of variation). Differences in heterogeneity among landscapes were explained by their topographic relief and their land cover. Landscape heterogeneity (standard deviation of the Normalized Difference Vegetation Index, NDVI) tended to increase linearly with topographic relief (standard deviation of elevation), but landscapes with low relief were much more heterogeneous than expected from this relationship. The latter were characterized by a large proportion of agricultural land. Percent agriculture, in turn, was inversely related to topographic relief. The strength of these relationships was evaluated against changes in image spatial resolution (grain size). Aggregation of NDVI images to coarser grain size resulted in steady decline of their standard deviation. Although the relationship between landscape heterogeneity and explanatory variables was generally preserved, rates of decrease in heterogeneity with grain size differed among landscapes. A spatial autocorrelation analysis showed that rates of decrease were related to the scale at which pattern is manifested. On one end of the spectrum are agricultural, low-relief landscapes with low spatial autocorrelation and small-scale heterogeneity associated with fields; their heterogeneity decreased sharply as grain size increased. At the other end, desert landscapes were characterized by low small-scale heterogeneity, high spatial autocorrelation, and almost no change in heterogeneity as grain sized was increased—their heterogeneity, associated with land forms, was present at a large scale. Received 1 October 1997; accepted 11 February 1998.     

Clonal dynamics in western North American aspen (Populus tremuloides)

Clonality is a common phenomenon in plants, allowing genets to persist asexually for much longer periods of time than ramets. The relative frequency of sexual vs. asexual reproduction determines long‐term dominance and persistence of clonal plants at the landscape scale. One of the most familiar and valued clonal plants in North America is aspen (Populus tremuloides). Previous researchers have suggested that aspen in xeric landscapes of the intermountain west represent genets of great chronological age, maintained via clonal expansion in the near absence of sexual reproduction. We synthesized microsatellite data from 1371 ramets in two large sampling grids in Utah. We found a surprisingly large number of distinct genets, some covering large spatial areas, but most represented by only one to a few individual ramets at a sampling scale of 50 m. In general, multi‐ramet genets were spatially cohesive, although some genets appear to be fragmented remnants of much larger clones. We conclude that recent sexual reproduction in these landscapes is a stronger contributor to standing genetic variation at the population level than the accumulation of somatic mutations, and that even some of the spatially large clones may not be as ancient as previously supposed. Further, a striking majority of the largest genets in both study areas had three alleles at one or more loci, suggesting triploidy or aneuploidy. These genets tended to be spatially clustered but not closely related. Together, these findings substantially advance our understanding of clonal dynamics in western North American aspen, and set the stage for a broad range of future studies.     

Didactics of molecular ecology

Summary Molecular biology conferred enormous progresses in biosciences during the past few years. This paradigm permutation in biological research certainly challenges biological education. Nevertheless, this is no reason to fundamentally reorganise biological education at the universities. A most entire view of the matter should remain a central request which meets the capacity and imagination of students. Selected biological phenomena taken from the traditional treasury remain suitable in the future too to mediate basic biological ways ot thinking. Forthcoming syllabuses, however, will necessitate the expansion of this concept. The scope of the present contribution is to show, how the integration of molecular biology in the teaching of classical disciplines of biology may be reached. Choosing ecology and environmental biology as examples, molecular biology will not only strengthen explanation models of cause-effect relationships in these disciplines, but also will facilitate the interconnections to interdisciplinary fields such as health education, social, and political education. This may result in an entire structural concept of classical and molecular biology.     

General and molecular ecology ofLegionella

The review is devoted to the general and molecular ecology of bacteria of the genusLegionella in natural and anthropogenic environments. Invasion of amoebae and infusoria by legionellae and their replication in these protozoa can be considered to be a preadaptation for invasion of the human immune system. Symbiosis of bacteria and protozoa as a promising model of cellular microbiology and the conception of bacterial ecological niches are discussed in relation to the low fidelity of most bacterial species to their habitats (biotopes). The necessity of elaboration of a similar conception for microbial consortia and associations is emphasized.     

Epizootiology of skunk rabies in North America

Public health surveillance data from the United States and Canada (1961 to 1982) were analyzed to determine if consistent temporal and spatial patterns in skunk rabies could be identified. Enzootic/epizootic rabies was recognized in 18 states (enzootic states) based on the criteria of greater than or equal to 20 yr of reported skunk rabies and at least 1 yr with a minimum of 50 reported rabid skunks. In other wildlife species, epizootics have been demonstrated to expand along a wave-like front. We hypothesized: if skunk rabies behaved in a similar fashion, states reporting rabid skunks would change over time. No such change was noted. During epizootics the number of counties reporting increased but not the number of states. Within Illinois certain counties were demonstrated to have persistent rabies histories and likely served as enzootic foci. Enzootic states combined prevalence indicated a 6 to 8 yr cycle for epizootics. Data on monthly percent rabies positive (number rabid/total number tested) were available from six states and Canada. Mean distributions were bimodal with winter and spring peaks. The patterns identified for skunk rabies differ from those of other major wildlife vectors and have significance for potential vaccination control regimes.     

General and molecular ecology of Legionella

The review is devoted to the general and molecular ecology of bacteria of the genus Legionella in natural and anthropogenic environments. Invasion of amoebae and infusoria by legionellae and their replication in these protozoa can be considered to be a pre-adaptation for invasion of the human immune system. Symbiosis of bacteria and protozoa as a promising model of cellular microbiology and the conception of bacterial ecological niches are discussed in relation to the low fidelity of most bacterial species to their habitats (biotopes). The necessity of elaboration of a similar conception for microbial consortia and associations is emphasized.     

North American Brant: effects of changes in habitat and climate on population dynamics

We describe the importance of key habitats used by four nesting populations of nearctic brant (Branta bernicla) and discuss the potential relationship between changes in these habitats and population dynamics of brant. Nearctic brant, in contrast to most geese, rely on marine habitats and native intertidal plants during the non‐breeding season, particularly the seagrass, Zostera, and the macroalgae, Ulva. Atlantic and Eastern High Arctic brant have experienced the greatest degradation of their winter habitats (northeastern United States and Ireland, respectively) and have also shown the most plasticity in feeding behavior. Black and Western High Arctic brant of the Pacific Flyway are the most dependent on Zostera, and are undergoing a shift in winter distribution that is likely related to climate change and its associated effects on Zostera dynamics. Variation in breeding propensity of Black Brant associated with winter location and climate strongly suggests that food abundance on the wintering grounds directly affects reproductive performance in these geese. In summer, salt marshes, especially those containing Carex and Puccinellia, are key habitats for raising young, while lake shorelines with fine freshwater grasses and sedges are important for molting birds. Availability and abundance of salt marshes has a direct effect on growth and recruitment of goslings and ultimately, plays an important role in regulating size of local brant populations.     

Environmental factors and community dynamics at the southernmost part of the North American Graminetum

We have delineated the spatio-temporal plant assemblages prevailing under contrasting environmental conditions at the southernmost part of the North American Graminetum in central México and discuss the relative importance of these factors in determining plant community structure and composition. 353 line-transect samples were collected during 11 years from exclosures and adjacent grazed areas within three Bouteloua-dominated grasslands and one Acacia schaffneri shrubland and analyzed using TWINSPAN. In addition, eight edaphic variables were utilized to evaluate similarities in soil properties among sites, using unweighted-pair groups method. Results from TWINSPAN were translated into mosaic patterns to show the distribution of communities as a function of environmental factors over time. Under no or moderate grazing, summer precipitation promotes an initial differentiation of vegetation into high, low or average rainfall communities. This situation is altered in grasslands degraded by intensive grazing pressure, where rainfall patterns play a subordinate role to that of livestock herbivory. Soil influences are secondary to those of precipitation and grazing in affecting grassland structure and composition. In shrubland, community stability is related to high floristic and edaphic spatial heterogeneity in the face of climatic variability.     

Spatial Variation in Soil Properties among North American Ecosystems and Guidelines for Sampling Designs

Soils are highly variable at many spatial scales, which makes designing studies to accurately estimate the mean value of soil properties across space challenging. The spatial correlation structure is critical to develop robust sampling strategies (e.g., sample size and sample spacing). Current guidelines for designing studies recommend conducting preliminary investigation(s) to characterize this structure, but are rarely followed and sampling designs are often defined by logistics rather than quantitative considerations. The spatial variability of soils was assessed across ∼1 ha at 60 sites. Sites were chosen to represent key US ecosystems as part of a scaling strategy deployed by the National Ecological Observatory Network. We measured soil temperature (T_s) and water content (SWC) because these properties mediate biological/biogeochemical processes below- and above-ground, and quantified spatial variability using semivariograms to estimate spatial correlation. We developed quantitative guidelines to inform sample size and sample spacing for future soil studies, e.g., 20 samples were sufficient to measure T_s to within 10% of the mean with 90% confidence at every temperate and sub-tropical site during the growing season, whereas an order of magnitude more samples were needed to meet this accuracy at some high-latitude sites. SWC was significantly more variable than T_s at most sites, resulting in at least 10× more SWC samples needed to meet the same accuracy requirement. Previous studies investigated the relationship between the mean and variability (i.e., sill) of SWC across space at individual sites across time and have often (but not always) observed the variance or standard deviation peaking at intermediate values of SWC and decreasing at low and high SWC. Finally, we quantified how far apart samples must be spaced to be statistically independent. Semivariance structures from 10 of the 12-dominant soil orders across the US were estimated, advancing our continental-scale understanding of soil behavior.     

A molecular biogeographic analysis of the relationship between North American melanoploid grasshoppers and their Eurasian and South American relatives

The Melanoplinae constitute one of the two largest subfamilies of Acrididae. Distributed mainly throughout the New World and parts of Eurasia, this group of grasshoppers includes over 100 genera and 800 species. Over the past five decades there has been considerable speculation on the origins of North and South American taxa. The most favored hypothesis proposes an ancient division of Laurasian taxa accompanying the separation of North America and Eurasia, with subsequent radiations within those continents, followed by a recent incursion of Nearctic melanoplines into the southern hemisphere with the establishment of the Isthmus of Panama. This research tests that scenario by phylogenetic analysis using as characters portions of five mitochondrial gene sequences, totaling 2285 bp. Three tree-building methods, maximum-parsimony, neighbor-joining, and maximum-likelihood, strongly support the different view that melanopline grasshoppers originated somewhere in the Americas and spread to the Old World. The feasibility of these findings is discussed within a geological context.