Stability and separation of aminoacyl-transfer RNAs on chromatography columns

In order to demonstrate that the apparent amount of a tRNA isoacceptor depends on the column matrix employed, chromatographic separations of lysyl tRNAs on several polystyrene anion exchangers and on a reversed-phase matrix (RPC-5) have been studied. Experiments were carried out to distinguish between the actual yield of isoacceptors (aminoacylated and free species) and the apparent yield of isoacceptors (aminoacylated species only). The results indicate that several polystyrene anion exchangers with similar physical properties resolve lysyl tRNAs differently. The differences are noted in the apparent yields and in the degree of chromatographic resolution. When fire column matrices are incubated separately with [³H]lysyl tRNAs and the deacylations measured, the results indicate chemical deacylation by two polystyrene anion exchange matrices but not by two other polystyrene matrices or by RPC-5. Further study of two major isoacceptors of lysyl-tRNA on these column matrices confirm that different matrices cause chemical deacylation of the aminoacyl tRNA bond at different rates. Therefore, the apparent yield of an isoacceptor depends upon the column matrix. The dissociation of the ester bond of the aminoacyl tRNA appears to be catalysed by the quaternary ammonium groups of the matrix. Enhanced deesterification of the aminoacyl tRNA bond is noted in slightly alkaline eluants, suggesting a nucleophilic attack by the hydroxyl anion of the medium. The major conclusion to be drawn is that both the yield and relative amounts of isoacceptors are dependent not only upon the resolving power of the column matrix, but also upon the physical and chemical nature of the matrix and upon the experimental conditions employed. This catalytic effect is in addition to the base-catalysed de-esterification promoted by the residual primary, secondary or tertiary amine groups present in the polystyrene anion exchangers.     

Reversed-phase high-performance liquid chromatographic analysis of thiamine phosphate esters at subpicomole levels

Separation and determination of thiamine phosphate esters were achieved by reversed-phase high-performance liquid chromatography (hplc) after conversion to corresponding thiochrome esters. The elution order was thiochrome triphosphate, thiochrome pyrophosphate, and thiochrome monophosphate by a system composed of 25 mm potassium phosphate buffer (pH 8.4) and 2.5% N,N-dimethylformamide. The minimum amount reproducibly detected was 0.05 pmol for each thiochrome phosphate. Thiamine phosphate esters in rat tissues were successfully determined by the reversed-phase hplc after alkaline oxidation of the tissue extract, which resulted in a good agreement in their contents to those obtained by the straight-phase hplc previously reported.     

Supports for reverse-phase high-performance liquid chromatography of large proteins

Reverse-phase high-performance liquid chromatography supports have been developed for use in separating proteins up to 300,000 M_r. They are based on silica supports to which octyl, cyanopropyl, or diphenyl groups are covalently bonded. Their effectiveness in rapidly separating several standard proteins is demonstrated. Applications presented include the separation of the α₁ and α₂ chains of chick Type I collagen within 1 h and the separation of the α and β components of human Type I collagen.     

Evaluation of gas chromatograph packings for the separation of butyric acid from serum-catalyzed hydrolysis of ethyl butyrate

Twelve synthetic and pilot adsorbents of different polarity and varying chemical composition were tested for the separation and quantitative determination of butyric acid from serum-catalyzed hydrolysis of ethyl butyrate. A gas chromatographic procedure with flame ionization detector (fld) using these adsorbents is satisfactory for the separation of butyric acid. The best results were obtained with Spheron SDA, Spheron BD, and Porapak R.     

A novel method for the separation and quantitation of benzene metabolites using high-pressure liquid chromatography

A method for the separation of benzene metabolites using reverse-phase high-pressure liquid chromatography is described. The antoxidant, ascorbic acid is added to an aqueous mixture of 1,2,4-benzenetriol, hydroquinone, catechol, and phenol, to prevent autooxidation. The eluting solvents are equilibrated with nitrogen, degassed, and maintained under a nitrogen atmosphere during the analysis. A highly resolved and reproducible profile of the metabolites is achieved under these conditions. This method should prove useful in a number of pharmacokinetic studies where the biotransformation of the parent compound to autooxidizable species such as polyphenols and quinones precludes analysis under aerobic conditions.     

A thin-layer chromatographic method for the quantitative separation and estimation of S-adenosylmethionine and S-adenosylethionine in rat liver

A procedure is described for the simultaneous isolation, separation, and quantitation of S-adenosylmethionine (AdoMet) and S-adenosylethionine (AdoEt) in rat liver. These compounds are isolated by precipitation with ammonium reineckate, are separated by thin-layer chromatography, and are quantitated by an isotope dilution determination. The procedure was tested with commercial standards added to liver homogenate ranging up to 160 μg AdoMet/g liver and 173 μg AdoEt/g liver; at all of the concentrations tested, the recoveries were linear and accurate. AdoMet recoveries were linear in the presence of 11.6 or 307 μg AdoEt/g liver, and AdoEt recoveries were linear in the presence of 37.8 or 191 μg AdoMet/g liver. AdoMet and AdoEt levels were measured in the livers of rats fed diet containing 0 or 0.3% dl-ethionine for 2 weeks. In the ethionine-treated animals, AdoMet concentrations were lower than in the controls; and, conversely, AdoEt increased from 0 to 259 μg/g liver.     

Enzyme-gas chromatography: Theoretical and experimental aspects

A method based on the production of gas by enzymes was developed to determine the concentration of amino acids. The enzyme was immobilized by coreticulation on the external surface of a capillary silicone tube. The gas produced diffused through the silicone membrane to the lumen of the tube and was carried by a vector gas to a gas chromatograph. The amount of measured gas has been shown to be a function of the amino acid concentration. A model of the system that gave good agreement between experimental and calculated values was developed.     

Optimized isocratic conditions for the simultaneous determination of serotonin precursors and metabolites by reversed-phase high-pressure liquid chromatography with electrochemical detection

We describe an analytical procedure for the simultaneous determination of 5-hydroxyindole derivatives using high-pressure liquid chromatography with electrochemical detection. The procedure clearly resolves 5-hydroxytryptophan, 5-hydroxytryptamine, 5-hydroxytryptophol, and 5-hydroxyindole-3-acetic acid. The C-18 extraction column methodology and high-pressure liquid chromatography-electrochemical detection parameters have been developed to provide a rapid, sensitive, and reproducible quantitative determination of these 5-hydroxyindoles with picogram sensitivity. Chromatograms obtained from the analysis of whole normal mouse brain by the present technique clearly resolve the 5-hydroxyindoles and appear to be uncomplicated by interfering substances.     

Hydrophobic chromatography of galactosyltransferase.

O-Glycosidic analogs of N-acetylglucosamine are good substrates for galactosyltransferase, and as the O-substituted group becomes more hydrophobic, the apparent K_m decreases as much as 2000-fold. l-leucine, leucine-amide, norleucine, valine, ?-amino-n-caproic acid and tyrosine-agaroses all retain galactosyltransferase in the presence of 1.25 m ammonium sulfate. The enzyme is eluted quantitatively with a five- to tenfold purification by a decreasing linear gradient of ammonium sulfate. Galactosyltransferase was not specifically bound on any of a series of ω-aminoalkylagaroses tested. A simple and highly efficient procedure for the isolation of galactosyltransferase from bovine skim milk was developed and consisted of a 40–60% ammonium sulfate precipitation of the enzyme from skim milk followed by chromatography on (1) norleucine-Sepharose, (2) UDP-hexanolamine-Sepharose, and (3) α-lactalbumin-Sepharose.     

Reverse-phase high-performance liquid chromatography of hydrophobic proteins and fragments thereof

Reverse-phase high-performance liquid chromatography (HPLC) resolution and recovery of cytochrome P-450 and bovine rhodopsin, both integral membrane proteins, and large peptides derived from P-450 LM₂ were enhanced by utilizing ternary solvents. Surprisingly, most test materials eluted later in the gradient when using mixtures of acetonitrile and propanol in the mobile phase compared to using either solvent alone. Of the supports tested, the best recovery of hydrophobic cytochrome P-450 LM₄ was experienced on the less retentive CN-bonded phase. Two alternate solvents for HPLC of polypeptides are proposed: (1) 0.02–0.1 m hexafluoroacetone/NH₃, pH 7.2 for highly acidic peptides; and (2) 6 m formic acid/0.13 m trimethylamine, pH 1.5, vs 4 m formic acid/0.09 m trimethylamine in propanol for relatively insoluble peptides. Anomalous side reactions between formic acid and peptides can cause HPLC peak broadening, increased retention, and decreased resolution. These deleterious effects are thought to be due in part to formyl esterification of serine and threonine residues and appear to be reversible by aminoethanol treatment.     

Measurement of urinary pyrimidine bases and nucleosides by high-performance liquid chromatography

A rapid procedure for the isolation, separation, identification and measurement of urinary pyrimidine bases and nucleosides by high-performance liquid chromatography (HPLC) is presented. The initial isolation of these compounds from urine was accomplished with small disposable ion-exchange columns. HPLC was performed on a silica gel column with a mobile phase composed of methylene chloride, methanol and 1 M aqueous ammonium formate buffer. Peaks were recorded at both 254 nm and 280 nm and the response ratio was used in conjunction with the elution volume for compound identification. The minimum detectable amount (signal-to-noise ratio = 2) ranged from 0.2 ng for uracil to 2.2 ng for cytidine. Linearity and recovery for thymine, uracil, uridine, pseudouridine, orotic acid and orotidine added to urine was demonstrated over almost a 10³ concentration range. The potential application of this method for the study of inborn errors in the urea cycle is discussed.     

Assay for polyunsaturated fatty acids by argentation-thin-layer chromatography using commercial thin-layer plates

A simple, rapid, and convenient procedure for silver nitrate impregnation of commercial precoated silica gel plates is described. Silica-gel plates (Silica gel 60, E. Merck) were sprayed with 40% silver nitrate in water, dried in air, and activated at 100°C for 30 min. Samples containing fatty acid methyl esters were applied as 0.5- to 1.0-cm streaks and developed with a solvent system of benzene:ethyl acetate (9:1, v/v). The plates were sprayed with 70% sulfuric acid saturated with potassium dichromate, and the spots were detected by careful heating at 120°C for 90 min. This procedure is useful for separation and isolation of various species of fatty acid methyl esters and for simple, rapid, and reproducible estimation of microgram quantities of materials by spectrodensitometry of the chromatogram.     

Computer-controlled direct scanning gel chromatography system

We have developed a system for direct scanning gel chromatography which is under direct control of a SYM-1 microprocessor which is in turn under control of a PDP 1104. Each scan consisting of ～200 data points of a 20-cm column may be obtained in as little as 3.5 s. Up to 100 scans may be obtained automatically without operator attention. A series of data manipulation programs have been written to allow determination of centroid migration rates, time difference chromatography calculations, etc. In conjunction with a mass transport simulation program it is possible to rapidly fit observed chromatography profiles. Use of the system to determine dispersion coefficients is described.     

Analysis of thiamine and its phosphate esters by high-performance liquid chromatography.

High-performance liquid chromatography was used to separate thiamine and its phosphate esters after conversion to corresponding highly fluorescent thiochrome derivatives by alkaline oxidation. These compounds were absorbed on LiChrosorb-NH₂, eluted with acetonitrile-90 mm potassium phosphate buffer (pH 8.4), and determined spectrofluorometrically. A complete, rapid, and quantitative separation of thiochrome and its phosphate derivatives was made and the minimum amount detected was 1 pmol for each of these compounds.     

Purification of radiolabeled and native polypeptides by gel permeation high-performance liquid chromatography

Some results and observations concerning the use of protein columns are presented. The combined use of four protein columns having different fractionation ranges together with a volatile triethylamine formate buffer allowed the sieving of various polypeptides according to their molecular weights over a range of 500 to 150,000. The addition of 4 or 6 m guanidine-HCl permitted the reduction of aggregation with no sacrifice in resolution or linearity. With that denaturant, rapid separation, and molecular weight determination in the range 500–90,000 is easily accomplished. Moreover, sample recoveries as determined with radiolabeled proteins always exceeded 70% while radioimmunoassay techniques can be directly applied to the column eluate. Applications to quick identification of natural fragments of a serine protease, tonin, analysis of maturation products of pro-opiomelanocortin in an in vitro pulse experiment and finally quantitation by radioimmunoassays of pituitary peptides and elution of their ¹²⁵I-labeled derivatives are described.     

Direct scanning active enzyme gel chromatography with halted flow for detecting molecular weight heterogeneity of active enzymes

As an extension of the method of scanning active enzyme chromatography we have introduced the option of halting flow while the enzyme is still present on the column. Once the flow has been halted, continuous monitoring of the absorbancy profile provides information on the relative distribution of the enzyme activity. When the baseline is relatively stable, one can detect very low levels of enzyme activity and thus monitor for the presence of small amounts of active enzyme of molecular weight different from that of the predominant form. This gives a significant improvement over regular active enzyme chromatography in the qualitative detection of molecular weight heterogeneity, by in effect reducing the noise level of the experiment. The method has been applied to several systems including aldolase from rabbit muscle, pyruvate dehydrogenase, and α-ketoglutarate dehydrogenase of bovine heart and hexokinase and glucose-6-phosphate dehydrogenase from yeast.     

Gas-liquid chromatography and enzymatic determination of alanopine and strombine in tissues of marine invertebrates

Gas-liquid chromatography (GLC) and enzymatic assays were developed for quantitating the imino acids, alanopine and strombine, alternate products of anaerobic glycolysis (replacing lactate) in the tissues of many marine invertebrates. For GLC analysis, d-strombine (2-methyliminodiacetic acid) and meso-alanopine (2,2′-iminodipropionic acid) were chromatographeo as N-trifluoroacetyl isobutyl esters. Modifications of techniques used for GLC analysis of amino acids were required to overcome steric hindrance in the acylation reaction caused by the presence of imino, rather than amino, groups. Both imino acids were separated from each other and from all amino acids by GLC. Detection limit of the technique was 0.05 μg imino acid. Enzymatic determination of imino acids made use of the alanopine-specific alanopine dehydrogenase (ADH) purified from the periwinkle, Littorina littorea, and the strombine/alanopine utilizing strombine dehydrogenase (SDH) from the clam, Mercenaria mercenaria, with assay conditions: 300 mm hydrazine buffer, pH 9.0, 5 mm NAD, and 0.3 unit ADH or 1.0 unit SDH. Enzymatic determinations of mixtures of alanopine and strombine in tissue samples required a dual analysis using both enzymes. Production of alanopine and strombine during anoxic stress in two species of marine molluscs was quantitated.     

Effect of albumin on binding and recovery of enzymes in affinity chromatography on Cibacron Blue

Bovine serum albumin appears to improve the specificity of Cibacron Blue F3GA in affinity chromatography of enzymes which interact with nucleotides. The action of bovine serum albumin may rest in its ability to selectively mask affinity sites in the dye, which are not specific for the nucleotide-binding region of the enzyme, while not seriously impairing binding nor its elution by nucleotides. Thus, the elution of Chlorella nitrate reductase from a Blue Sepharose chromatographic column by its coenzyme, NADH, fails, unless the column is first treated with bovine serum albumin. Such treatment also improves the recovery of some other nucleotide-binding enzymes tested.     

High-performance liquid chromatography of N,O-acylated sialic acids

A rapid, isocratic high-performance liquid chromatographic method for the analysis of N-acetylneuraminic acid, N-glycolylneuraminic acid, and their O-acetylated derivatives is described. Separation of sialic acids and of other monosaccharides as sugar-borate complexes is achieved on an anion-exchange resin. The sialic acids elute as individual peaks after the other sugars tested. The method allows quantitative determination, for example, of amounts of N-acetylneuraminic acid as small as 10 nmol. On cation-exchange resin sialic acids cannot be differentiated, but can be separated from neutral and amino sugars, allowing the determination of as little as 3 nmol of total sialic acids.