When can embryos learn? A test of the timing of learning in embryonic amphibians

Learning is crucial to the survival of organisms across their life span, including during embryonic development. We set out to determine when learning becomes possible in amphibian development by exposing spotted salamander (Ambystoma maculatum) embryos to chemical stimuli from a predator (Ambystoma opacum), nonpredator (Lithobates clamitans), or control at developmental stages 16–21 or 36–38 (Harrison 1969 ). Once exposures were completed and embryos hatched, we recorded the number of movements and time spent moving of individuals in both groups and all treatments. There was no significant difference in number of movements or time spent moving among any of the treatments. The groups that were exposed to predator stimuli and a blank control at stages 36–38 were also tested to determine whether there was a difference in refuge preference or difference in survivorship when exposed to a predator (marbled salamander). There was no difference in survival or refuge preference between individuals; however, all individuals preferred vegetated over open areas regardless of treatment type. We discuss hypotheses for the absence of embryonic learning in this species and suggest it may be the result of the intensity of the predator–prey interaction between the predator, large marbled salamander larvae, and the prey, spotted salamander larvae.     

Do metal-rich plants deter herbivores? A field test of the defence hypothesis

Some plant species growing on metalliferous soils are able to accumulate heavy metals in their shoots up to very high concentrations, but the selective advantage of this behaviour is still unknown. The most popular hypothesis, that metals protect plants against herbivores, has been tested several times in laboratory conditions, with contradictory results. We carried out the first large-scale test of the defence hypothesis in eight natural populations of the model Zn hyperaccumulator Thlaspi caerulescens J. and C. Presl (Brassicaceae). In two climatic regions (temperate, Belgium–Luxembourg, and Mediterranean, southern France), we worked in metalliferous and in normal, uncontaminated environments, with plants spanning a wide range of Zn concentrations. We also examined the importance of glucosinolates (main secondary metabolites of Brassicaceae) as antiherbivore defences. When exposed to natural herbivore populations, T. caerulescens suffered lower herbivory pressures in metal-enriched soils than in normal soils, both in Belgium–Luxembourg and in southern France. The trapping of gastropods shows an overall lower population density in metalliferous compared to normal environments, which suggests that herbivory pressure from gastropods is lower on metalliferous soils. In addition, foliar concentration of glucosinolates was constitutively lower in all populations from metal-enriched soils, suggesting that these have evolved towards lower investment in organic defences in response to lower herbivory pressure. The Zn concentration of plants had a protective role only for Belgian metallicolous plants when transplanted in normal soils of Luxembourg. These results do not support the hypothesis that Zn plays a key role in the protection of T. caerulescens against enemies. In contrast, glucosinolates appear to be directly involved in the defence of this hyperaccumulator against herbivores.     

Nitric oxide: an effective weapon of the plant or the pathogen?

An explosion of research in plant nitric oxide (NO) biology during the last two decades has revealed that NO is a key signal involved in plant development, abiotic stress responses and plant immunity. During the course of evolutionary changes, microorganisms parasitizing plants have developed highly effective offensive strategies, in which NO also seems to be implicated. NO production has been demonstrated in several plant pathogens, including fungi, but the origin of NO seems to be as puzzling as in plants. So far, published studies have been spread over multiple species of pathogenic microorganisms in various developmental stages; however, the data clearly indicate that pathogen‐derived NO is an important regulatory molecule involved not only in developmental processes, but also in pathogen virulence and its survival in the host. This review also focuses on the search for potential mechanisms by which pathogens convert NO messages into a physiological response or detoxify both endo‐ and exogenous NO. Finally, taking into account the data available from model bacteria and yeast, a basic draft for the mode of NO action in phytopathogenic microorganisms is proposed.     

Pisonia grandis monocultures limit the spread of an invasive ant—a case of carbohydrate quality?

The mechanisms by which invasive species are able to spread into and dominate natural communities are poorly understood and remain a focus of invasion research. In this quest, studying invasions that are limited by a controlling factor will be more informative than will studies documenting unabated spread and impacts. Some ant species are very successful invaders, and research demonstrating abiotic and biotic factors limiting their success has aided the understanding of invasion ecology. We report here a study showing the highly invasive African big headed ant Pheidole megacephala having a novel distribution on coral cays within Australia’s Great Barrier Reef. These patterns displayed a clear limitation of its distribution with monocultures of the tree Pisonia grandis. This distribution was contrary to the known environmental limitations of the ant, and the limitation could not be associated with an underlying abiotic determinant of the vegetation type. We present these distributional patterns, and following consideration of all known biotic and abiotic limitations of ant invasions we discuss the potential that the peculiar ecophysiology of P. grandis is the causal factor. Specifically, we suggest that the quality of carbohydrate supply to ants is a limitation to invasive spread in much the same way that carbohydrate quantity is known to affect ant population densities in other ecosystems.     

Vegetation changes in blown-down and scorched forests 10–26 years after the eruption of Mount St. Helens,Washington, USA

We examine patterns of vegetative change in blown-down and scorched forests in the blast zone of Mount St. Helens (USA), 10–26 years after the eruption. We compare trends in community attributes in four post-eruption environments, or site types, defined by severity of disturbance, presence/absence of a protective snowpack at the time of eruption, and seral state (previously clearcut vs. mature/old forests). Permanent plots established in 1980 at 16 sites were sampled at 5- to 6-year intervals between 1989 and 2005. Data on species presence and abundance were used to characterize changes in total plant cover, life-form spectra, species diversity, species turnover, and community composition. Due to the magnitude and heterogeneity of disturbance, vegetation re-establishment was gradual and highly variable among sites. Total plant cover averaged 36–70% after 26 years. Early-seral forbs were dominant except in snow-protected sites, where surviving shrubs were most common. Tree regeneration remained sparse after 26 years (<?6% cover in all but two sites). Species richness increased in all site types, reflecting greater species gain than loss, although rates of gain declined with time. Species heterogeneity, integrating the number and abundance of taxa, did not increase. Successional trajectories were distinct, but parallel among sites, reflecting legacies of pre-eruption composition, variation in disturbance severity, and differences in composition of early-seral colonists. Slow re-colonization by forest herbs and trees likely reflects seed limitations and abiotic stress rather than competition from early-seral species. Succession following this major eruption is both slow and contingent on pre-conditions, nuances of the disturbance, and species’ life histories.     

Keeping pace with climate change: what can we learn from the spread of Lessepsian migrants?

Species need to move to keep pace with changing climates, but we do not know if species can move at the required speed. Spread rates of native species may underestimate how fast species can move, we therefore assessed how fast Lessepsian species (marine non‐native species that invaded the Mediterranean from the Red Sea through the Suez Canal) can spread to give a ‘best‐case’ assessment of the effects of climate change on marine biodiversity. We show that about 20% of Lessepsian species could not spread fast enough to keep pace with climate change in about 20% of the global seas and this suggests that climate change may lead to biodiversity loss. The velocity of climate change on the seabed is much lower than at the sea surface, and as a result of this the proportion of species that keep pace with climate change at the seabed was much larger than at the sea surface. This suggests that locations at depth could act as refuges for slow dispersing species. Our analysis compared different estimates of the spreading abilities of marine species and showed that the estimate of spread rates strongly affects the predicted effect of climate change on biodiversity. Providing more accurate estimates of the spreading ability of marine species should therefore have priority if we want to predict the effect of climate change on marine biodiversity. This study is a first approximation of the potential scale and distribution of global marine biodiversity loss and can provide benchmark estimates of the spread rates that species could achieve in colonizing suitable habitat. Assisted colonization may be required to maintain biodiversity in the most strongly affected areas.     

Is protein unfolding the reverse of protein folding? A lattice simulation analysis.

Simulations and experiments that monitor protein unfolding under denaturing conditions are commonly employed to study the mechanism by which a protein folds to its native state in a physiological environment. Due to the differences in conditions and the complexity of the reaction, unfolding is not necessarily the reverse of folding. To assess the relevance of temperature initiated unfolding studies to the folding problem, we compare the folding and unfolding of a 125-residue protein model by Monte Carlo dynamics at two temperatures; the lower one corresponds to the range used in T -jump experiments and the higher one to the range used in unfolding simulations of all-atom models. The trajectories that lead from the native state to the denatured state at these elevated temperatures are less diverse than those observed in the folding simulations. At the lower temperature, the system unfolds through a mandatory intermediate that corresponds to a local free energy minimum. At the higher temperature, no such intermediate is observed, but a similar pathway is followed. The structures contributing to the unfolding pathways resemble most closely those that make up the "fast track" of folding. The transition state for unfolding at the lower temperature (above Tm) is determined and is found to be more structured than the transition state for folding below the melting temperature. This shift towards the native state is consistent with the Hammond postulate. The implications for unfolding simulations of higher resolution models and for unfolding experiments of proteins are discussed.     

When is connectivity important? A case study of the spatial pattern of sudden oak death

Although connectivity has been examined from many different angles and in many ecological disciplines, few studies have tested in which systems and under what conditions connectivity is important in determining ecological dynamics. Identifying general rules governing when connectivity is important is crucial not only for basic ecology, but also for our ability to manage natural systems, particularly as increasing fragmentation may change the degree to which connectivity influences ecological dynamics. In this study, we used statistical regression, least‐cost path analysis, and model selection techniques to test the relative importance of potential connectivity in determining the spatial pattern of sudden oak death, a tree disease that is killing millions of oak and tanoak trees along coastal forests of California and Oregon. We hypothesized that potential connectivity, in addition to environmental conditions, is important in determining the spatial distribution of sudden oak death, the importance of connectivity is more apparent when measured using biologically meaningful metrics that account for the effects of landscape structure on disease spread, and the relative importance of environmental variables and connectivity is approximately equal. Results demonstrate that potential connectivity was important in determining the spatial pattern of sudden oak death, though it was relatively less important than environmental variables. Moreover, connectivity was important only when using biologically meaningful metrics as opposed to simple distance‐based metrics that ignore landscape structure. These results demonstrate that connectivity can be important in systems not typically considered in connectivity studies – highlighting the importance of examining connectivity in a variety of different systems – and demonstrate that the manner in which connectivity is measured may govern our ability to detect its importance.     

Origin of the parasites of an invading species,the Australian cane toad (Bufo marinus): are the lungworms Australian or American?

Phylogeographical analyses that identify the geographical origin of parasites in invading species can clarify the parasites' potential for biological control of the invader and the risks posed by the parasite to native species. Our data on nuclear and mitochondrial genetic sequences show that the nematode lungworms (Rhabdias spp.) in invasive Australian populations of cane toads (Bufo marinus) are Rhabdias pseudosphaerocephala, a South American species. We did not find this lungworm species in any Australian frogs sympatric with cane toads, suggesting that the parasite does not attack Australian frogs and hence may offer potential as a biocontrol agent of the toad.     

Friend or foe? A behavioral and stable isotopic investigation of an ant–plant symbiosis

In ant–plant symbioses, the behavior of ant inhabitants affects the nature of the interaction, ranging from mutualism to parasitism. Mutualistic species confer a benefit to the plant, while parasites reap the benefits of the interaction without reciprocating, potentially resulting in a negative impact on the host plant. Using the ant–plant symbiosis between Cordia alliodora and its ant inhabitants as a model system, I examine the costs and benefits of habitation by the four most common ant inhabitants at La Selva Biological Station, Costa Rica. Costs are measured by counting coccoids associated with each ant species. Benefits include patrolling behavior, effectiveness at locating resources, and recruitment response. I also compare the diets of the four ant species using stable isotope analysis of nitrogen (N) and carbon (C). Ants varied in their rates of association with coccoids, performance of beneficial behaviors, and diet. These differences in cost, benefit, and diet among the ant species suggest differences in the nature of the symbiotic relationship between C. alliodora and its ants. Two of the ant species behave in a mutualistic manner, while the other two ant species appear to be parasites of the mutualism. I determined that the mutualistic ants feed at a higher trophic level than the parasitic ants. Behavioral and dietary evidence indicate the protective role of the mutualists, and suggest that the parasitic ants do not protect the plant by consuming herbivores.     

A new paradigma on the plant evolution: from a natural evolution to an artificial evolution?

After evidencing the great importance of plants for animals and humans in consequence of the photosynthesis, several considerations on plant evolution are made. One of the peculiar characteristics of the plant is the sessile property, due especially to the cell wall. This factor, principally, strengthened by the photosynthetic process, determined the particular developmental pattern of the plant, which is characterized by the continuous formation of new organs. The plant immobility, although negative for its survival, has been, in great part, overcome by the acquisition of the capacity of adaptation (plasticity) to the environmental stresses and changes, and the establishment of more adapted genotypes. This capacity to react to the external signals induced Trewavas to speak of "plant intelligence". The plant movement incapacity and the evolution of the sexual reproduction system were strongly correlated. In this context, the evolution of the flower in the Angiosperms has been particularly important to allow the male gamete to fertilize the immobile female gamete. Moreover, the formation of fruit and seed greatly improved the dispersal and conservation of the progeny in the environment. With the flower, mechanisms to favour the outcrossing among different individuals appeared, which are essential to increase the genetic variability and, then, the plant evolution itself. Although the Angiosperms seem highly evolved, the plant evolution is not surely finished, because many reported morpho-physiological processes may be still considered susceptible of further improvement. In the last years the relationships among humans, plants and environment are becoming closer and closer. This is due to the use of the DNA recombinant techniques with the aim to modify artificially plant characters. Therefore, the risk of a plant evolution strongly directed towards practical or commercial objectives, or "an artificial evolution", may be hypothesized.     

A historical view of schistosomiasis japonica in the Chikugo river basin. What can we learn from autopsy?

Three hundred and forty-nine autopsy cases of schistosomiasis japonica were divided into two groups, based on the pathomorphology. Frequent regressive hepatic lesions such as active schistosomal lesion and destruction of limiting plates characterized the first group. The second group showed reparative hepatic lesions such as regeneration of the collapsed parenchyma, newly formed limiting plates and subsequent narrowing and disappearance of fibrous septa. Complications of liver cirrhosis and hepatocellular carcinoma related to viral hepatitis B and/or C also increased. Clonorchiasis was consistently found in both groups.     

Living plant cells released from the root cap: A regulator of microbial populations in the rhizosphere?

Barley (Hordeum vulgare L. cv. ‘Onda’) plants were grown in nutrient solutions supplied either 0 (no Ni added), 0.6, or 1.0 μM NiSO₄. Plants supplied 0 μM Ni developed Ni deficiency symptoms; Ni deficiency resulted in the disruption of nitrogen metabolism, and affected the concentration of malate and various inorganic anions in roots, shoots, and grain of barley. The concentrations of 10 of the 11 soluble amino acids determined were 50–200% higher in 30-day-old shoots of plants supplied inadequate Ni levels than in shoots of Ni-supplied plants. The total concentration of all amino acids determined was higher in roots and grain of Ni-deficient plants. Concentrations of NO₃ ^- and Cl^- were also higher in Ni-deficient barley shoots than in Ni-sufficient barley shoots. In contrast, the concentration of alanine in shoots of Ni-deficient barley was reduced to one-third of the concentration in Ni-sufficient plants. The shoot concentrations of malate and SO₄ ^2- were also depressed under Ni-deficient conditions. Total nitrogen concentration in grain, but not in shoots, of Ni-deficient plants was significantly increased over that found in Ni-adequate plants. Nickel deficiency results in marked disruptions of N metabolism, malate and amino acid concentrations in barley. These results are discussed in view of the possible roles of Ni in plants. Supported, in part, by an ITT International Fellowship awarded to PHB and administered by the Institute for International Education, United Nations Plaza, New York, NY. This research was part of the program of the Center for Root-Soil Research. Supported, in part, by an ITT International Fellowship awarded to PHB and administered by the Institute for International Education, United Nations Plaza, New York, NY. This research was part of the program of the Center for Root-Soil Research.     

Does competition or facilitation regulate migrant ungulate populations in the Serengeti? A test of hypotheses

Summary Interspecific competition and facilitation have both been proposed as processes promoting species separation and co-existence in African ungulates. In one group of grazers on the Serengeti plains, comprising wildebeest (Connochaetes taurinus), zebra (Equus burchelli), and Thomson's gazelle (Gazella thomsoni), these processes have also been suggested to regulate the populations. Censuses of these populations over 20 years have shown changes that allow a test of which, if either, process regulates population numbers. Wildebeest numbers have levelled off as a result of intraspecific competition for food following a five-fold increase due to release from disease and an increase in food supply. Zebra numbers have remained stationary throughout the same period. Gazelle numbers have declined in the last 10 years. These results are contrary to the facilitation hypothesis, which predicts that wildebeest numbers should not have increased if those of zebra did not, and that gazelle numbers should have increased since the wildebeest population increased. The gazelle results are consistent with the interspecific competition hypothesis, but the zebra results are contrary to it. We propose an alternative hypothesis that predation regulates the zebra population, and we suggest ways of testing this.     

A new genetics or an epiphenomenon? Variations in the discourse of epigenetics researchers

Epigenetics is a field on the rise that seeks to explain phenotypic variance despite a stable and enduring DNA sequence. The hopes for the field are high, and claims about its revolutionary potential abound. Some scholars in the humanities and social sciences see the field as potentially replacing reductionism and genetic determinism, bringing social life and environment more firmly into view. This paper attends to the discourses of epigenetics researchers themselves. Through qualitative interviewing and analysis, I classify these scientists into three groups based on the claims they make about the impact and future of their field: champions, those who take the middle ground, and skeptics. The variance in discourse about epigenetics suggests a far more complex and contested trajectory for the field, one that may or may not support anti-deterministic views.     

Phylogenenetic approach of the section Bulbocodii D.C. of Narcissus based on cpDNA. A case of taxonomic inflation?

In this paper, we analyzed the phylogeny of the section Bulbocodii (genus Narcissus; Amarillydaceae) using the matK and trnL-F fragments of cpDNA in order to review the validity of the recognized taxa. Our results indicate that Narcissus obesus should be considered a valid species, and that N. blancoi is a distinct taxon. In addition, seven previously recognized species, N. juressianus, N. subnivalis, N. graellsii, N. conspicuus, N. citrinus, N. nivalis, and N. quintanilhae, should be assigned to an infraspecific rank under N. bulbocodium, as they are not valid species. In addition, we analyzed the distribution of the three morphological characters widely used in the systematics of this section and found that their variation does not agree with the phylogenetic results, rendering these characters limited taxonomical utility. This result suggests that the section Bulbocodii shows high morphological lability, which can explain the proliferation of nominal species.