The pH Dependence and the Binding Equilibria of the Calcium Indicator — Arsenazo III

The underlying principles of binding equilibria of arsenazo III with Ca²⁺ and Mg²⁺ are presented. Ca²⁺ and Mg²⁺ can bind arsenazo III in several different protonated forms depending on pH. The binding affinities of these different protonated forms of arsenazo III with Ca²⁺ increase in the order of H₄A_4- <H₃A^5- >H₂A^6- and with Mg²⁺, H₄A^4- > H₃A^5- > H₂A^6-. Arsenazo III is not membrane bound. The sensitivity ratio of arsenazo III with Ca²⁺ to arsenazo III with Mg²⁺ is close to two orders of magnitude. Arsenazo III and its complexes are extremely sensitive to pH changes. With 5 μM arsenazo III, the minimum detectable amount of Ca²⁺ can be as low as 0.08 μM. Contrary to current belief, we found that Mg²⁺ can bind to arsenazo III in a slightly acidic medium. Potential applications of arsenazo III to the study of membrane Ca²⁺ transport are also discussed.     

Comparative biochemical studies of milks—III. Immunoelectrophoretic comparisons of milk proteins of the artiodactyla

• 1.1. Milk proteins from nineteen species of artiodactyls and from five other species have been examined immunoelectrophoretically versus rabbit antisera for milk proteins from Bos taurus.
• 2.2. Milks of ruminants gave positive reactions to anti-cow β-lactoglobulin and anti-cow α-lactalbumin sera. Milks from non-ruminant artiodactyls and from perissodactyls, rodents, lagomorphs and primates did not react with these antisera.
• 3.3. Milk proteins from both ruminant and non-ruminant species reacted with anti-cow serum albumin and anti-cow casein sera.

     

Chemical examination of the roots of Terminalia arjuna—the structures of arjunoside III and arjunoside IV,two new triterpenoid glycosides

The non-phenolic fraction of the alcoholic extract of the root bark of Terminalia arjuna yielded two new triterpenoid glycosides, arjunoside III and arjunoside IV in addition to arjunglucoside I and arjunetin. The structure of arjunoside III was established as the 28-β-d(+)-glucuronopyranoside of arjunic acid by a study of its chemical and spectroscopic (¹H and ¹³C NMR) data. Arjunoside IV was shown to be the 3-O-α- l(?)-rhamnoside of arjunic acid. Leucocyanidin, ellagic acid and gallic acid have been isolated from the phenolic part of the root extract.     

Calculation of the Raman frequencies as a function of pressure in the solid phases II and III (III’) of benzene

We calculate here the Raman frequencies of the lattice modes A(A _g ), B(B _2g ) and C(B _1g B _3g ) as a function of pressure at room temperature for the solid phases (II, III and III’) of benzene. This calculation is performed using volume data through the mode Grüneisen parameter. It is found that our calculated frequencies of those lattice modes increase with increasing pressure, as expected. Calculated frequencies are in good agreement with the measurements of the three lattice modes for the solid phases studied in benzene.     

Characterization of the χψ subcomplex of Pseudomonas aeruginosa DNA polymerase III

Background

The control of intracellular vesicle trafficking is an ideal target to weigh the role of alternative splicing in shaping genomes to make cells. Alternative splicing has been reported for several Soluble N-ethylmaleimide-sensitive factor Attachment protein REceptors of the vesicle (v-SNAREs) or of the target membrane (t-SNARES), which are crucial to intracellular membrane fusion and protein and lipid traffic in Eukaryotes. However, splicing has not yet been investigated in Longins, i.e. the most widespread v-SNAREs. Longins are essential in Eukaryotes and prototyped by VAMP7, Sec22b and Ykt6, sharing a conserved N-terminal Longin domain which regulates membrane fusion and subcellular targeting. Human VAMP7/TI-VAMP, encoded by gene SYBL1, is involved in multiple cell pathways, including control of neurite outgrowth.

Results

Alternative splicing of SYBL1 by exon skipping events results in the production of a number of VAMP7 isoforms. In-frame or frameshift coding sequence modifications modulate domain architecture of VAMP7 isoforms, which can lack whole domains or domain fragments and show variant or extra domains. Intriguingly, two main types of VAMP7 isoforms either share the inhibitory Longin domain and lack the fusion-promoting SNARE motif, or vice versa. Expression analysis in different tissues and cell lines, quantitative real time RT-PCR and confocal microscopy analysis of fluorescent protein-tagged isoforms demonstrate that VAMP7 variants have different tissue specificities and subcellular localizations. Moreover, design and use of isoform-specific antibodies provided preliminary evidence for the existence of splice variants at the protein level.

Conclusions

Previous evidence on VAMP7 suggests inhibitory functions for the Longin domain and fusion/growth promoting activity for the Δ-longin molecule. Thus, non-SNARE isoforms with Longin domain and non-longin SNARE isoforms might have somehow opposite regulatory functions. When considering splice variants as "natural mutants", evidence on modulation of subcellular localization by variation in domain combination can shed further light on targeting determinants. Although further work will be needed to characterize identified variants, our data might open the route to unravel novel molecular partners and mechanisms, accounting for the multiplicity of functions carried out by the different members of the Longin proteins family.     

Stabilization of the Escherichia coli DNA polymerase III ε subunit by the θ subunit favors in vivo assembly of the Pol III catalytic core

Escherichia coli DNA polymerase III holoenzyme (HE) contains a core polymerase consisting of three subunits: α (polymerase), ε (3'-5' exonuclease), and θ. Genetic experiments suggested that θ subunit stabilizes the intrinsically labile ε subunit and, furthermore, that θ might affect the cellular amounts of Pol III core and HE. Here, we provide biochemical evidence supporting this model by analyzing the amounts of the relevant proteins. First, we show that a ΔholE strain (lacking θ subunit) displays reduced amounts of free ε. We also demonstrate the existence of a dimer of ε, which may be involved in the stabilization of the protein. Second, θ, when overexpressed, dissociates the ε dimer and significantly increases the amount of Pol III core. The stability of ε also depends on cellular chaperones, including DnaK. Here, we report that: (i) temperature shift-up of ΔdnaK strains leads to rapid depletion of ε, and (ii) overproduction of θ overcomes both the depletion of ε and the temperature sensitivity of the strain. Overall, our data suggest that ε is a critical factor in the assembly of Pol III core, and that this is role is strongly influenced by the θ subunit through its prevention of ε degradation.     

Estimation of protein digestibility—III. Studies on the digestive enzymes from the pyloric ceca of rainbow trout and salmon

Digestive proteinases were isolated and partially purified from the pyloric ceca of trout and salmon. Their stability and some catalytic properties were compared with those of a three-enzyme system that is used for determination of in vitro protein digestibility. In contrast to the three-enzyme system, pyloric ceca trypsin and total proteinase activity were least stable at pH values below 5.0 and most stable under alkaline conditions up to pH 10.0. Thermal inactivation (50%) occurred in 60 min at 55°C for trypsin activity of trout and salmon ceca proteinases and at 40°C for the three-enzyme system at the pH (8.0) of the in vitro assay. Thermal inactivation (50%) of total proteinase activity occurred in 60 min at about 55, 50 and 35°C for chinook, trout and three-enzyme preparations, respectively. SDS-PAGE zymograms of the ceca enzymes showed the presence of several proteolytic activity bands. Two of the bands corresponded in molecular weight to trypsin and chymotrypsin. Ceca proteinases differ from the three-enzyme system in their response to inhibitors; in particular, the ceca proteinases are much more sensitive to soybean trypsin inhibitor than the procine trypsin used in the three-enzyme system when assayed for trypsin, but less sensitive when assayed for total proteinase. The distinctive properties of ceca enzymes help explain why they are more appropriate than the three-enzyme system, and other enzyme cocktails for in vitro protein digestibility assay of saunonid feed components.     

The foraging behavior of honeybees on hairy vetch. III. — Differences in the vetch

Summary The time required for each of 50 honeybees to forage from a hairy vetch blossom, and the time required for each bee that tripped blossoms to trip a different blossom was measured three times each in two fields. There were highly significant differences in the speed with which bees tripped and foraged from blossoms in the two fields. It appeared that the blossoms in one field were easier to trip than the blossoms in the other. The bees spent less time foraging from the blossoms in the field in which tripping was most rapid, probably because there was less nectar in the blossoms in that field than in the other field. The bees that did not trip blossoms foraged from blossoms more rapidly than the bees that did trip the blossoms. After all known sources of variation had been removed there was a highly significant correlation between the times required for bees to trip and to forage from blossoms; this is interpreted as indicating differences in the efficiency of individual bees. In one of the fields many of the bees foraged through punctures in the blossoms made by carpenter bees. An attempt was made to measure the relationship of the amount of sugar collected by bees per unit time to the attractiveness of competing plants.Published as Technical Contribution No. 4636 from theTexas Agricultural Experiment Station.     

Mono- and di-ethers of isohematoporphyrin—III. Elucidation of the HPLC forked peak phenomenon. Synthesis of isohematoporphyrin-monoethers by trialkylorthoformates

• 1.1. The constituents of the forked HPLC peaks afforded by isohematoporphyrin ethers, when prepared by heating the porphyrin with the relevant alcohol contaning 20% (w/v) H₂SO₄, have been separated and identified as the mono- and di-ethers respectively. They are formed in approximately equal amounts.
• 2.2. When trialkylorthoformates are used for the synthesis, the product is predominantly the mono-ether.
• 3.3. Isohematoporphyrin mono- and di-ethers tend to form some kind of monomer/dimer-association.