倒刺鲃两极虫的宿主新记录及其分子系统学研究

为弄清倒刺鲃两极虫(Myxidium spinibarba)的宿主多样性和胭脂鱼(Myxocyprinus asiaticus)寄生黏孢子虫的种类组成,研究基于形态和分子数据,比较分析了寄生于不同宿主的倒刺鲃两极虫的形态学和形态计量学特征及分子系统发育关系。结果显示:寄生于胭脂鱼和中华倒刺鲃的倒刺鲃两极虫株系在形态学和形态计量学上未出现显著性差异, 18S rDNA序列相似度为99.9%—100.0%,遗传距离为0.000—0.001,符合种内变异;寄生于不同宿主倒刺鲃两极虫的株系在系统发育树中嵌合聚支,且寄生于胭脂鱼的倒刺鲃两极虫株系先分化。以上结果表明:研究中两株系与倒刺鲃两极虫为同一物种,但在分子水平已经出现分化;这是首次在胭脂鱼中检获到黏孢子虫,胭脂鱼是倒刺鲃两极虫的新宿主。     

尖形碘泡虫(黏体门:碘泡虫科)的重描述及其分子系统学研究

研究基于形态和分子信息重描述了寄生于嘉陵江重庆段鲫(Carassius auratus Linnaeus)鳃部和胆囊的尖形碘泡虫(Myxobolus acutus Wu and Chen, 1987),并获得了该虫体的18S rDNA和ITS1 rDNA序列。尖形碘泡虫成熟孢子壳面观呈梨形,前端稍尖,后端钝圆,缝面观呈宽纺锤形。孢子长(13.6±0.9)μm [(11.4—15.3)μm],宽(10.2±0.9)μm [(7.5—12.8)μm],厚(7.6±0.6)μm [(6.9—8.3)μm]。两梨形极囊开口处紧靠并位于孢子前端,极囊大小不等,大极囊长(6.2±0.4)μm [(5.1—7.5)μm],宽(3.8±0.4)μm [(2.8—4.7)μm],极丝盘绕5—8圈,小极囊长(2.7±0.4)μm [(1.7—3.7)μm],宽(1.4±0.2)μm [(0.9—1.9)μm],极丝盘绕2—3圈。基于18S rDNA为分子标记的系统发育分析显示:尖形碘泡虫与中华单极虫(Thelohanellus sinensis)有最近的亲缘关系,两物种形成的进化支与贝壳碘泡虫(M. mu...     

尼氏单极虫(粘体门,双壳目)重描述及基于18S rDNA系统地位分析

采用常规细胞学方法与18S rDNA序列比较的方法,对采自于重庆市嘉陵江段的粘孢子虫,尼氏单极虫Thelohanellus nikolskii进行了形态学和分子生物学的研究,此为首次在我国长江流域检获尼氏单极虫。本文在补充了尼氏单极虫中国种群18S rDNA序列信息的分析、比较基础上,探讨了该虫与相邻种属的系统关系,佐证了其分类学位置。     

武汉单极虫(粘体门,双壳目)的重描述及基于18S rDNA序列系统发育分析

通过光镜、扫描电镜和18S rDNA序列对比,对寄生于异育银鲫Carassius auratus gibelio体表的粘孢子虫进行了形态学和分子生物学研究,鉴定其为武汉单极虫Thelohanellus wuhanensis,并发现了形态学新特征:膜状鞘的起始位置不同,且仅包围孢子后部;壳瓣底部内侧具“V”形褶皱;一片壳瓣前端有突起结构;缝脊直,突出明显;测得极丝全长为158.5 ～179.2 (170.7 ±5.7) μm.经18S rDNA序列对比,与T.wuhanensis[HQ613410]的相似率为99.87％.系统发育分析表明,单极虫与碘泡虫具有非常近的亲缘关系,将单极虫属与碘泡虫属二者归属于碘泡科的分类方法更合理.     

Trichoderma harzianum及其近缘种的分子系统学研究

Thichoderma harzianum是木霉属内最常见的一个“集合种”。本研究对来源不同的T.harzianum及其相似种的46个菌株进行了ITS序列测定,将其ITSl—5．8S—ITS2序列与来自EMBL的参考菌株的序列进行比较,并进行系统发育分析,此外对其中的18个菌株进行了RAPD多态性分析,试图明确T.harzianum的多样性以及与其相似种之间的关系。ITS结果表明,T.harzianum及其相似种可分成2个群(A、B)：A群由T.hamatum、T.asperellum、T.at-roviride、T.koningii和T.viride组成,并形成2个分支,表明T.viride和T.koningii、T.atroviride的亲缘关系较近,而与T.hamatum、T.asperellum较远;B群由T.spirale、T.hamatum、T.inhamatum、T.harzianum和T.anam。Hypocrea vinosa组成,并形成6个分支。T.inhamatum可分成2个群(Ti1、Ti2)、T.harzianum至少可分成5个群(Thl、Th2、Th4、Th5、Th6)。结果还表明T.hamatum的遗传差异较大,T.hamatum的模式菌株归属于A群,而其他的T.hamatum的菌株归属于B群。RAPD结果与ITS的结果基本一致。     

棉铃虫18S核糖体RNA基因的序列分析及其分子系统学

克隆并分析了鳞翅目棉铃虫Helicoverpa armigera (Hübner)18S核糖体RNA基因(18S rDNA)的全序列,将该序列与鞘翅目、膜翅目、同翅目、双翅目、捻翅目和弹尾目各一种昆虫的同源保守区进行了比较。序列分析结果显示：鳞翅目和双翅目昆虫在18S rDNA结构上彼此较为相似,捻翅目昆虫的18S rDNA分子结构表现出与其它目昆虫有较大的差异,但相对与弹尾目昆虫的18S rDNA较为接近。该结果支持了有关捻翅目属于一个独立的目级分类阶元的论点。     

黄颡单尾虫(粘体门,双壳目)的重描述及基于28S rDNA和ITS-5.8S序列的系统地位分析

采用形态分类学方法与以28S rDNA和ITS-5.8S序列为基础的分子系统学研究方法,对采自嘉陵江重庆市磁器口江段的黄颡单尾虫Unicauda pelteobagrusMa,1998进行了形态学和分子生物学的研究。基于28S rDNA数据探讨了黄颡单尾虫以及单尾虫属与相邻种属粘孢子虫间的系统地位;基于5.8S rDNA数据比较分析了粘孢子虫的系统地位。补充了黄颡单尾虫重庆种群形态学信息和28S rDNA、ITS-5.8S rDNA序列的分子信息。     

洪湖碘泡虫的再描述及其近缘种的鉴别性研究

研究基于形态特征和18S rDNA序列相似度、遗传距离、变异位点、GC含量和系统发育比较分析,对采自河南龙湖的寄生于异育银鲫鳃部的一种黏孢子虫以及相似性极高且易混淆的黏孢子虫种类(洪湖碘泡 Myxobolus honghuensis Liu,et al. 2012、瓶囊碘泡虫Myxobolus ampullicapsulatus Zhao,et al. 2008、咽碘泡虫Myxobolus pharynae Lu,et al. 2012和吴李碘泡虫Myxobolus wulii (Wu Li,1986) 进行了系统的鉴别研究。研究结果显示: 河南龙湖异育银鲫鳃部所检获的黏孢子虫为洪湖碘泡虫,该种群对所寄生的异育银鲫未造成疾病症状; 咽碘泡虫与洪湖碘泡虫各种群在形态上极相似,两者间18S rDNA序列相似度为99%-100%,遗传距离为0-0.0013,GC含量均为44.31%,变异位点为2个,表明咽碘泡虫与洪湖碘泡虫应为同一物种。     

石斑角形虫(黏体门, 角形虫科)的分子证据及其在不同宿主中的遗传变异

研究从中国东海的青石斑鱼 Epinephelus awoara Temminck & Schlegel 1842和褐带石斑鱼E. bruneus Bloch 1793的胆囊中检获了石斑角形虫 Ceratomyxa epinephela Wu, Wu et hua, 1993, 首次提供了其SSU rDNA和ITS1 rDNA序列, 并基于形态学和分子数据进行了重新描述。石斑角形虫成熟孢子的孢子长(4.8±0.5) μm (3.6—5.6 μm), 孢子厚(31.8±4.8) μm (23.3—37.5 μm); 孢子壳瓣光滑且等大, 由垂直的缝线连接; 极囊长(2.9±0.2) μm (2.4—3.7 μm), 极囊宽(2.6±0.2) μm (2.2—3.1 μm); 孢子夹角处稍微凹陷, 延伸至两端逐渐变平坦, 夹角为 (175.9±3.7)° (165.5°—179.7°)。基于SSU rDNA序列构建的系统发育树显示石斑角形虫与诺兰角形虫C. nolani Gunter & Adlard 2009, 卡特莫尔角形虫C. cutmorei Gunter & Adlard 2009和横山角形虫C. yokoyamai Gunter & Adlard 2009 有很近的亲缘关系, 且其宿主均为石斑鱼属物种。结果表明, 类群关系较近的宿主其寄生的同属黏孢子虫可能具有更近的系统发育关系。基于SSU rDNA和ITS1 rDNA的遗传分析显示, 石斑角形虫的4个分离株已发生了明显的遗传分化(形成了4个基因型), 形成了不同的种群, 但在不同宿主种类间并未形成特有的分化。     

火丝菌科(盘菌目)部分属的系统学研究

本文以核糖体小亚基(SSUrDNA)为分子标记,对28个属60个种的71个序列片段进行序列分析,探讨火丝菌科的属间亲缘关系。研究结果支持广义的火丝菌科概念,表明该科是单起源的,显示5个主要分支。腐生或与植物共生形成菌根、囊盘被表面具有毛状物的15个属构成A分支,该分支中仅部分属之间的关系比较明确;与苔藓植物生长在一起的4个属构成B分支;C分支包括Otidea和Otideopsis两属,后者与Otidea的成员混杂在一起;D分支仅包括Acervus的成员;E分支由Geopyxis,Tarzetta,Paurocotylis等5个属组成。分子系统学的研究结果与形态学分类系统之间存在一定差异,依据形态特征和超微结构建立的亚科和族均未获得支持。     

Description of Myxidium pseudocuneiforme n. sp. (Myxosporea: Myxidiidae) from Cyprinus carpio in China,with the resolution on a taxonomic dilemma of Myxidium cuneiforme

Investigations on myxozoan parasites of fish from Chongqing in China, revealed two Myxidium cuneiforme-like myxosporeans infecting the gallbladder of Cyprinus carpio carpio and Carassius auratus. We researched their myxospore morphology, and analyzed their genetic similarity and phylogenic relationships to other myxozoans based on small subunit ribosomal DNA (18S rDNA) sequences. Although both parasites recovered were morphologically similar, the myxosporean isolated from C. auratus was consistent in morphology to Myxidium cuneiforme, which was described from this host species. The parasite isolated from C. c. carpio had overlapping myxospore dimensions to M. cuneiforme, but on average, the polar capsules were not as long. More importantly, this parasite was genetically distinct from M. cuneiforme with 96.3% and 96.5% similarity in two sequences of 18S rDNA, and we propose the name Myxidium pseudocuneiforme n. sp. for this myxozoan from common carp. Its mature myxospores are ellipsoidal and asymmetric with pointed ends in valvular view, arc-shaped or fusiform in sutural view. The pyriform polar capsules are equal in size, and polar filament with 5–6 coils. This study highlights that molecular characteristics and host specificity are indispensable for myxozoan species identification when presented with the taxonomic dilemma of whether we are observing one species that exhibits slight morphological differences or multiple, but similar, species in different hosts.     

碘泡科(粘体门:粘孢子纲:双壳目)动物的系统分类学研究

粘孢子虫是一类拥有广泛寄主的后生动物寄生虫,主要寄生于鱼类,并可引发病害,从而受到人们广泛的关注。但其基础研究还不够深入,在分类地位和分类系统方面存在着许多争议。而碘泡科是粘孢子虫最大的一科,其在属级和种级阶元的归属问题上也一直备受争议。此类动物结构简单、种类繁多,依据传统的形态特征进行的分类并不十分准确,借助更为先进的显微技术和以及分子生物学、免疫学等方法的应用,其分类学研究取得了巨大进步。本文从碘泡科的种、属级阶元分类和方法学两个方面对国内外碘泡科物种系统分类学研究的现状进行了综述,对碘泡科各属的归类问题进行了梳理,并对一些容易混淆的种类进行了厘清,同时总结了应用于碘泡虫系统分类研究中的几种方法,以期为该科动物的系统分类和鱼类粘孢子虫病的防治提供基础资料。     

Synopsis of the species of Thelohanellus Kudo, 1933 (Myxozoa: Myxosporea: Bivalvulida)

A synopsis of the species of Thelohanellus Kudo, 1933 (Myxozoa: Myxosporea: Myxobolidae) is presented. It includes a total of 108 nominal species. For each species, the most relevant morphological and morphometric characteristics are provided, together with data on the type-host and locality, the site of infection within the host and the original references.     

Myxidium mackiei (Myxosporea) in Indo-Gangetic flap-shelled turtles Lissemys punctata andersonii: parasite-host interaction and ultrastructure

Myxosporeans are common parasites of fish, and uncommon parasites of amphibians, reptiles and invertebrates, that can cause significant morbidity and mortality. The common genus Myxidium infects the excretory system of turtles, yet knowledge of its pathogenicity in these hosts is limited. We offer new knowledge of morphological and ultrastructural aspects of host-parasite interactions in Myxidium infections from our recent diagnostic investigations on captive freshwater turtles listed in CITES (Appendix II). We investigated the cause of death of 2 adult Indo-Gangetic flap-shelled turtles Lissemys punctata andersonii from a zoo collection. After post-mortem examination, tissues were processed for histopathology, and special stains were used to demonstrate morphology of myxosporean spores. Additional kidney tissue, immersion-fixed in formalin, was processed for transmission electron microscopy. Both turtles were infected with a myxosporidian, Myxidium mackiei, in the kidney, which occluded 5 to 10% of the renal proximal convoluted tubules. The polysporic plasmodia contained pairs of developing and mature spores. Each mature, spindle-shaped spore had 2 asymmetric valves (1 overlapping, 1 overlapped), with 10 to 13 and 10 to 14 longitudinal ridges per valve, and 2 polar capsules each containing a polar filament with 4 to 5 turns. A pair of spores, each surrounded by a membrane-bound electron-lucent matrix, lay in an enclosing cell within the plasmodium. Regions of the parasite-host interface consisted of undulations of the parasite surface, with intense pinocytotic activity beneath, intermingled with the hosts' microvilli, and endocytotic channels at the apex of renal epithelial cells. The microvilli of the renal epithelial cells of infected tubules were frequently sheared or compressed, or occasionally missing; we did not detect other pathology induced by the parasite. Our report of M. mackiei in L. punctata is a new host record. Both individuals also had disseminated pale yellow nodules (bacterial granulomas) present in lung, heart, kidney, and skeletal muscle, and both were infected with coccidia (tentatively identified as Eimeria sp.) in multiple organs. The cause of death for one turtle was septicemia, but remained unknown for the other individual.     

Molecular Phylogeny of Neotropical Anopheles (Nyssorhynchus) Albitarsis Species Complex (Diptera: Culicidae)

A phylogeny was reconstructed for four species belonging to the Neotropical Anopheles (Nyssorhynchus) albitarsis complex using partial sequences from the mitochondrial cytochrome oxidase I (COI) and NADH dehydrogenase 4 (ND4) genes and the ribosomal DNA ITS2 and D2 expansion region of the 28S subunit. The basis for initial characterization of each member of the complex was by correlated random amplification of polymorphic DNA-polymerase chain reaction (RAPD-PCR) markers. Analyses were carried out with and without an outgroup (An.(Nys.) argyritarsis Robineau-Desvoidy) by using maximum parsimony, maximum likelihood, and Bayesian methods. A total evidence approach without the outgroup, using separate models for "fast" (COI and ND4 position 3) and "slow" (rDNA ITS2 and D2, and COI and ND4 position 1) partitions, gave the best supported topology, showing close relationships of An. albitarsis Lynch-Arribálzaga to An. albitarsis B and An. marajoara Galv?o & Damasceno to An. deaneorum Rosa-Freitas. Analyses with the outgroup included showed poorer support, possibly because of a long branch attraction effect caused by a divergent outgroup, which caused one of the An. marajoara specimens to cluster with An. deaneorum in some analyses. The relationship of the above-mentioned result to a separately proposed hypothesis suggesting a fifth species in the complex is discussed.     

Molecular Phylogeny and Species Identification of Pufferfish of the Genus Takifugu (Tetraodontiformes, Tetraodontidae)

The phylogenetic relationships and species identification of pufferfishes of the genus Takifugu were examined by use of randomly amplified polymorphic DNA (RAPD) and sequencing of the amplified partial mitochondrial 16S ribosomal RNA genes. Amplifications with 200 ten-base primers under predetermined optimal reaction conditions yielded 1962 reproducible amplified fragments ranging from 200 to 3000 bp. Genetic distances between 5 species of Takifugu and Lagocephalus spadiceus as the outgroup were calculated from the presence or absence of the amplified fragments. Approximately 572 bp of the 16S ribosomal RNA gene was amplified, using universal primers, and used to determine the genetic distance values. Topological phylogenic trees for the 5 species of Takifugu and outgroup were generated from neighbor-joining analysis based on the data set of RAPD analysis and sequences of mitochondrial 16S rDNA. The genetic distance between Takifugu rubripes and Takifugu pseudommus was almost the same as that between individuals within each species, but much smaller than that between T. rubripes, T. pseudommus, and the other species. The molecular data gathered from both analysis of mitochondria and nuclear DNA strongly indicated that T. rubripes and T. pseudommus should be regarded as the same species. A fragment of approximately 900 bp was amplified from the genome of all 26 T. pseudommus individuals examined and 4 individuals of intermediate varieties between T. rubripes and T. pseudommus. Of the 32 T. rubripes individuals, only 3 had the amplified fragment. These results suggest that this fragment may be useful in distinguishing between T. rubripes and T. pseudommus. Received September 29, 2000; accepted February 26, 2001.     

Molecular Phylogeny Analysis and Species Identification of Dendrobium (Orchidaceae) in China

Dendrobium plants are important commercial herbs in China, widely used in traditional medicine and ornamental horticulture. In this study, sequence-related amplified polymorphism (SRAP) markers were applied to molecular phylogeny analysis and species identification of 31 Chinese Dendrobium species. Fourteen SRAP primer pairs produced 727 loci, 97% of which (706) showed polymorphism. Average polymorphism information content of the SRAP pairs was 0.987 (0.982–0.991), showing that plenty of genetic diversity exists at the interspecies level of Chinese Dendrobium. The molecular phylogeny analysis (UPGMA) grouped the 31 Dendrobium species into six clusters. We obtained 18 species-specific markers, which can be used to identify 10 of the 31 species. Our results indicate the SRAP marker system is informative and would facilitate further application in germplasm appraisal, evolution, and genetic diversity studies in the genus Dendrobium.