Taxonomic identification of algae (morphological and molecular): species concepts,methodologies, and their implications for ecological bioassessment

Algal taxonomy is a key discipline in phycology and is critical for algal genetics, physiology, ecology, applied phycology, and particularly bioassessment. Taxonomic identification is the most common analysis and hypothesis‐testing endeavor in science. Errors of identification are often related to the inherent problem of small organisms with morphologies that are difficult to distinguish without research‐grade microscopes and taxonomic expertise in phycology. Proposed molecular approaches for taxonomic identification from environmental samples promise rapid, potentially inexpensive, and more thorough culture‐independent identification of all algal species present in a sample of interest. Molecular identification has been used in biodiversity and conservation, but it also has great potential for applications in bioassessment. Comparisons of morphological and molecular identification of benthic algal communities are improved by the identification of more taxa; however, automated identification technology does not allow for the simultaneous analysis of thousands of samples. Currently, morphological identification is used to verify molecular taxonomic identities, but with the increased number of taxa verified in algal gene libraries, molecular identification will become a universal tool in biological studies. Thus, in this report, successful application of molecular techniques related to algal bioassessment is discussed.     

The past,present and future of phycology in China

Algae have been part of Chinese life for thousands of years. They are widely used as food and have been cited in Chinese literature as early as 2500 years ago. However, formal taxonomic studies on Chinese algae were initiated by foreign scientists only about 200 years ago, and by Chinese phycologists only about 90 years ago. This paper summarizes the history of modern phycological studies on Chinese algae and provides an overview of the achievements of phycological studies by Chinese scientists, especially on algal taxonomy, morphology, genetics, ecology and environmental research, physiology, biotechnology, algal culture, applied phycology and space phycology, in the last century. Recent development in phycological research focuses on algal floristic and molecular systematics, algal molecular biotechnology, applied phycology including micro and macroalgal cultivation and algal product development, and the roles of algae in environmental pollution control. These areas will also be the main focuses of Chinese phycological research in the foreseeable future.     

Dinosaur Evolution: Student Response to Dinosaur Ramblings

Abstract: In the 2007 Journal of Wildlife Management article “Dinosaur Ramblings,” Scalet described a shift in university and agency programs away from applied management research toward basic ecological research. We interpret Scalet's commentary as primarily synonymizing applied management research to game management and basic ecological research to nongame management and theoretical research. Although we agree with Scalet that a change in management practices has occurred, we believe that change is more an integration of applied and basic research as opposed to a shift away from management. We provide a hierarchical framework to alternatively explain Scalet's perceived shift in which we place applied management and basic theoretical research under the science of ecology. We believe integration of basic and applied research has been driven by the evolving structure of society and the public's changing view of natural resources. The integration of basic and applied research is necessary for informed and, thence, better management practices.     

Digital microscopy in phycological research, with special reference to microalgae

Digital imaging technology is gradually being incorporated into all areas of biological research, but there is a distinct lack of information resources targeted at scientists in their specialist areas. There is a wealth of potential applications for digital images in phycology, including morphometric or visual analysis of specimens, taxonomic databases and publication of digital micrographs in lieu of photomicrographs. Here, we provide a review of digital imaging in general and its potential for the field of microalgal research in particular. We also present a number of imaging techniques that are critical for image acquisition and optimization, which can enable beginners to build their own libraries of high quality digital images. Resolution requirements of digital cameras are explained and related to microscope resolution. The benefits of digital imaging technology are discussed and contrasted with those of traditional silver halide technology.     

The strain concept in phytoplankton ecology

Laboratory cultures are important tools for investigating the biology of microalgae, allowing experimentation under controlled conditions. This control is critical for comparative studies, such as those often used to investigate intra-specific variation in properties of interest. By holding the environment constant, the experimentalist can gain insight into the genetic basis of phytoplankton phenotypes and by extension, into the adaptive history of those genotypes. In most cases the adaptations of interest are those that the algae have evolved in response to their natural environment. However, here it is argued that such experiments may instead reveal evolutionary adaptations to, and/or non-adaptive changes induced by, the culture conditions under which the alga is maintained. We present a review of the processes of evolution as they pertain to microalgal culture, and illustrate this discussion with examples of in-culture evolution from both within and outside the field of phycology. With these considerations in mind, recommendations are made for experimental practice focusing on comparative physiology, for which the effects of in-culture evolution are particularly confounding. Finally we argue that, although problematic in some contexts, the evolutionary propensities of phytoplankton cultures actually present an important opportunity for experimental evolutionary research with direct environmental significance.     

Individuality in seaweeds and why we need to care

Documenting the causes and consequences of intraspecific variation forms the foundation of much of evolutionary ecology. In this Perspectives piece, we review the importance of individual variation in ecology and evolution, argue that contemporary phycology often overlooks this foundational biological unit, and highlight how this lack of attention has potentially constrained our understanding of seaweeds. We then provide some suggestions of promising but underrepresented approaches, for instance: conducting more studies and analyses at the level of the individual; designing studies to evaluate heritability and genetic regulation of traits; and measuring associations between individual variation in functional traits and ecological outcomes. We close by highlighting areas of phycological research (e.g., population biology, ecology, aquaculture, climate change management) that could benefit immediately from including a focus on individual variation. Algae, for their part, provide us with a powerful and diverse set of ecological and evolutionary traits to explore these topics. There is much to be discovered.     

Quality Control and Assurance: crucial for the sustainability of the applied phycology industry

The chemical and nutritional properties of microalgae are well known, which has led to an ever expanding industry for foods and dietary supplements both in terms of quantity and products. Little has been done to regulate or control quality and assurance in the applied phycology industry and it is known that it varies considerably. Nutritional aspects of produced biomass and consumption as dietary supplements have become issues of concern, especially since the industry is lucrative and fast growing. Various claims are made regarding dietary and food supplements that include health, nutrition, structure and functioning, many often unsubstantiated. Although quality is a subjective term many organisations are involved in testing, controlling and determining criteria. Today quality is more than just standards where it is an "integrated quality management approach" involving amongst others "hazard analyses and critical control points" (HACCP) practices. Microalgae are not recognised as a food or food supplement and they are also not categorised under herbals or botanicals, but as "other supplements". Produced microalgal biomass is subject to contamination from the entire range of contaminants and pathogens. Contamination of products by algal toxins in mixed culture populations also occurs. The industry has largely regulated itself, but there is considerable scope for improvement. There is a need for support and dissemination of information in the industry.     

Insect-parasitic nematodes: from lab curiosities to model organisms

Interest in studying insect-parasitic nematodes was originally focused on their potential as biological control agents of insects and other arthropod pests. Now, after 30 years of intense basic and applied research, realization of the practical use of insect-parasitic nematodes, particularly of entomopathogenic nematodes and their symbiotic bacteria, has spurred developments across a far broader scientific front. We are now entering a new era of discovery in which tools of molecular genetics are being increasingly used to address a range of biological questions. The knowledge gained from these efforts will directly benefit the practical application of insect-parasitic nematodes as more effective biopesticides. Moreover, these studies will advance these nematodes as unique and intrinsically interesting biological model systems not only for basic research but also in applied fields such as plant health, human medicine, pharmaceutical bioprospecting, and genetic engineering. In this review, the past and current state of insect-parasitic nematode research is summarized. Future research priorities and goals are identified and discussed.     

Gymnodinium aeruginosum (Dinophyta): A blue-green dinoflagellate with a vestigial,anucleate, cryptophycean endosymbiont

Gymnodinium aeruginosum has the usual fine structure of a dinoflagellate but does not seem to contain a well elaborated peduncle or a microtubular basket. Naked cells are surrounded by a single large amphiesmal vesicle. It houses an endosymbiont with typical blue-green cryptophycean chloroplasts (generally only one), cryptophycean starch grains in the periplastidal cytoplasm without a nucleomorph, and two membranes separating the periplastidal cytoplasm from the cryptophycean cytoplasm which contains mitochondria, ER, vesicles and ribosomes, but no eukaryotic nucleus. The endosymbiont is surrounded by a single membrane. Possible ways of the acquisition of the endosymbiont and the problem of the existence of ribosomes within a compartment without nucleus are discussed.Devoted to Prof. Dr.L. Geitler, the Nestor of phycology and endosymbiosis research, on the occasion of the 90th anniversary of his birthday.     

Translational Research and Youth Development

Borrowing the term “translational research” (TR) from medicine, along with some of the ideas and practices that define it, holds promise as a way of linking research more closely to the practice of youth development. However, doing so entails substantial adaptation. TR is more than a new name for applied research. It comprehends the sequence of very different kinds of research that connect new knowledge with practice and ultimately with enhanced youth development. Research syntheses and evidence-based programs and practices are central to TR, which draws on a variety of research methods and traditions, including epidemiology, “basic” research, evaluation, and implementation science. Syntheses are needed in all these areas along with communication among researchers representing them as well as with practitioners. The flow of information is bi-directional; research is informed by practice and practitioners conduct research.     

Selectable Markers and Reporter Genes: A Well Furnished Toolbox for Plant Science and Genetic Engineering

Marker genes (MGs) are essential tools for plant research and biotechnology. Positive selectable marker genes (SMGs) are used in genetic transformation to allow only transgenic cells to grow and develop and are necessary for efficient transformation. Negative SMGs confer a selective disadvantage to the cells that express them, and have several uses in both basic and applied research. Reporter genes (RGs) make it possible to easily screen cells or tissues for their expression. Several tens of different genes from bacteria, fungi, plants, and animals have been demonstrated to function as SMGs. Here, SMGs are classified based on the mechanism of action of the gene products. To provide the readers with practically useful information, details on transformation and selection efficiency are given. RGs are the object of intense research. Refinement of existing RGs and development of new ones is constant, and has provided powerful aids for fine studies on cell biology and more efficient genetic engineering. They are classified as vital and non vital, depending on the possibility to screen their expression in living cells. The effect of MG expression on the phenotype and their safety in crops is briefly discussed. The picture emerging from this literature review is that a plentiful array of powerful and versatile tools for basic and applied research is available.     

Meeresalgen von Helgoland

This report represents a photographic documentation of the more conspicuous species of the marine algal vegetation of the island Helgoland (North Sea), based on collections and observations made since 1959. The catalogue is largely restricted to macroscopic forms, as adequate knowledge of most of the microscopic ones is not yet available. Remarks on some rare species are added in a special chapter; the list includes some 150 species. With a few exceptions, the figures have been obtained from living algae; they illustrate aspects of reproduction and development and, occasionally, demonstrate different seasonal habits. The simplified key may be useful for providing a guide both for naturalists and students of marine phycology. In addition, this algal flora enhances our knowledge of the distribution of benthic species along the European coasts, as the rocky island of Helgoland intervenes between southern Norway and the shores of the English Channel.     

Quantum dots in bio-imaging: Revolution by the small

Visual analysis of biomolecules is an integral avenue of basic and applied biological research. It has been widely carried out by tagging of nucleotides and proteins with traditional fluorophores that are limited in their application by features such as photobleaching, spectral overlaps, and operational difficulties. Quantum dots (QDs) are emerging as a superior alternative and are poised to change the world of bio-imaging and further its applications in basic and applied biology. The interdisciplinary field of nanobiotechnology is experiencing a revolution and QDs as an enabling technology have become a harbinger of this hybrid field. Within a decade, research on QDs has evolved from being a pure science subject to the one with high-end commercial applications.     

Population genomics for wildlife conservation and management

Biodiversity is under threat worldwide. Over the past decade, the field of population genomics has developed across nonmodel organisms, and the results of this research have begun to be applied in conservation and management of wildlife species. Genomics tools can provide precise estimates of basic features of wildlife populations, such as effective population size, inbreeding, demographic history and population structure, that are critical for conservation efforts. Moreover, population genomics studies can identify particular genetic loci and variants responsible for inbreeding depression or adaptation to changing environments, allowing for conservation efforts to estimate the capacity of populations to evolve and adapt in response to environmental change and to manage for adaptive variation. While connections from basic research to applied wildlife conservation have been slow to develop, these connections are increasingly strengthening. Here we review the primary areas in which population genomics approaches can be applied to wildlife conservation and management, highlight examples of how they have been used, and provide recommendations for building on the progress that has been made in this field.     

与环境管理有关的生态学研究展望

当今世界 ,自然资源和环境管理间有许多问题需要解决。决策者们不断寻求能够实现环境质量改善和有效、持续利用资源的途径和手段。而环境资源的有限性和稀缺性也决定了必须进行有效的环境管理 ,这就需要借助生态学知识作出有效可行的管理决策 [10 ,11]。然而 ,在我国目前的条件下 ,生态学家和环境管理人员之间通常缺乏联系 ,在许多方面难以达成共识。其原因 ,既有人为造成的 ,也有历史发展的原因。在解决有关生态保护、环境管理和可持续发展之间的种种问题时 ,对生态学研究所处的地位和作用缺乏理论上的探索。另一方面 ,生态系统管理比我们…     

Metabolomics across the globe

This article highlights some of the larger and more recent metabolomics activities which are funded and organised at local (mostly national) level. While being just a snap-shot, and far from exhaustive, the details clearly illustrate the extent to which metabolomics has already become established and integrated in both basic fundamental and more applied research covering a wide range of organisms. Many national (service) centres for metabolomics already exist and additional ones are envisaged.     

Advances in microbial delignification

Microbial delignification is a new field of applied research. The progress will therefore run parallel to the development of new basic knowledge on the physiological demands of white-rot fungi to degrade lignin and on new knowledge on enzyme mechanisms involved in lignin degradation.In the last few years both basic and applied research on microbial conversion of lignocellulosic materials have vastly expanded. In certain areas, such as microbial delignification, considerable progress has recently been made. Basidiospores from Sporotrichum pulverulentum and some CEL(-) mutants have been obtained. Crossing of mycelium from single basidiospore cultures of wild-type and CEL(-) mutants will eventually give rise to much better CEL(-) mutants than those which have been used in the past. An understanding of which enzymes are the most important for lignin degradation to take place is also beginning to develop. This review discusses present knowledge and future possibilities in this field.     

Chemicals from alternative feedstocks in the United States

Abstract: Growing industrial interest in products from renewable alternative feedstocks has resulted in the creation of more industry-led federal research and development programs. The basis of this interest is introduced, followed by an overview of the various federal programs that support basic through applied research relevant to chemical products from renewable resources, and evidence of the increased coordination efforts between programs. The majority of the paper outlines a new program within the U.S. Department of Energy, the Alternative Feedstocks Program, which specifically targets chemicals from renewables which have the potential to become part of the next generation of high-volume chemical feedstocks for the manufacturing industries. The first product of the program, an iterative process technology decision analysis tool, is broadly presented using the first process development project: succinic acid from fermentable sugars.