Trichloroacetic acid dehalogenation by reductive radicals

Advanced oxidation processes, using either UVC/H₂O₂ or UVC/K₂S₂O₈, both in the presence of H₂CO₂ or CH₃OH are very efficient in mineralizing aqueous solutions of trichloroacetic acid (TCAA) leaving no toxic residues. The main reaction initiating TCAA depletion is its reduction by the radicals or CH₂OH to yield radicals and Cl⁻ anions. Further thermal reactions of lead to the formation of CO₂ and HCl. Molecular oxygen competes with TCAA for and CH₂OH radicals. However, in experiments under continuous irradiation of initially air-saturated solutions in closed reactors, the dissolved molecular oxygen concentration was depleted to low enough levels to favor the reaction of the reducing radicals with TCAA. A general reaction mechanism is proposed and discussed. The reaction between superoxide radical anions and TCAA was found to be of low efficiency.     

Synthesis and structures of bimetallic silicon-containing imido alkylidene complexes of molybdenum Me2Si[CHMo(NAr)(ORF3)2]2 and PhVinSi[CHMo(NAr)(ORF3)2]2

Bimetallic alkylidene complexes of molybdenum (R_F3O)₂(ArN)MoCH-SiMe₂-CHMo(NAr)(OR_F3)₂ (1) and (R_F3O)₂(ArN)MoCH-SiPhVin-CHMo(NAr)(OR_F3)₂ (2) (Ar = 2,6-C₆H₃; R_F3 = CMe₂CF₃) have been prepared by the reactions of vinyl silicon reagents Me₂Si(CHCH₂)₂ and PhSi(CHCH₂)₃ with known alkylidene compound PhMe₂C-CHMo(NAr)(OR_F3)₂. Complexes 1 and 2 were structurally characterized. Ring opening metathesis polymerization (ROMP) of cyclooctene using compounds 1 and 2 as initiators led to the formation of high molecular weight polyoctenamers with predominant trans-units content in the case of 1 and predominant cis-units content in the case of 2.     

Kinetics and mechanism of the oxidation of oxalic acid by tetrachloroaurate(III) ion

The oxidation of oxalic acid by tetrachloroaurate(III) ion in 0.005 ? [HClO₄] ? 0.5 mol dm⁻³ is first order in and a fractional order in [oxalic acid], the reactive entities being AuCl₃(OH)⁻ and ions. The pseudo first-order rate, k_obs, with respect to [Au(III)], is retarded by increasing [H⁺] and [Cl⁻]. The retardation by H⁺ ion is caused by the dissociation equilibrium . A mechanism in which a substitution complex, is formed from AuCl₃(OH)⁻ and ions prior to its rate limiting disproportionation into products is suggested. The rate limiting constant, k, has been evaluated and its activation parameters are reported. The equilibrium constant K₁ for the formation of the substitution complex and its thermodynamic parameters are also reported.     

Time-resolved FTIR difference spectroscopy in combination with specific isotope labeling for the study of A1, the secondary electron acceptor in photosystem 1

A phylloquinone molecule (2-methyl, 3-phytyl, 1, 4-naphthoquinone) occupies the A₁ binding site in photosystem 1 particles from Synechocystis sp. 6803. In menB mutant photosystem 1 particles from the same species, plastoquinone-9 occupies the A₁ binding site. By incubation of menB mutant photosystem 1 particles in the presence of phylloquinone, it was shown in another study that phylloquinone will displace plastoquinone-9 in the A₁ binding site. We describe the reconstitution of unlabeled (¹⁶O) and ¹⁸O-labeled phylloquinone back into the A₁ binding site in menB photosystem 1 particles. We then produce time-resolved Fourier transform infrared (FTIR) difference spectra for these menB photosystem 1 particles that contain unlabeled and ¹⁸O-labeled phylloquinone. By specifically labeling only the phylloquinone oxygen atoms we are able to identify bands in FTIR difference spectra that are due to the carbonyl (CO) modes of neutral and reduced phylloquinone. A positive band at 1494 cm⁻¹ in the FTIR difference spectrum is found to downshift 14 cm⁻¹ and decreases in intensity on ¹⁸O labeling. Vibrational mode frequency calculations predict that an antisymmetric vibration of both CO groups of the phylloquinone anion should display exactly this behavior. In addition, phylloquinone that has asymmetrically hydrogen bonded carbonyl groups is also predicted to display this behavior. The positive band at 1494 cm⁻¹ in the FTIR difference spectrum is therefore due to the antisymmetric vibration of both CO groups of one electron reduced phylloquinone. Part of a negative band at 1654 cm⁻¹ in the FTIR difference spectrum downshifts 28 cm⁻¹ on ¹⁸O labeling. Again, vibrational mode frequency calculations predict this behavior for a CO mode of neutral phylloquinone. The negative band at 1654 cm⁻¹ in the FTIR difference spectrum is therefore due to a CO mode of neutral phylloquinone. More specifically, calculations on a phylloquinone model molecule with the C₄O group hydrogen bonded predict that the 1654 cm⁻¹ band is due to the non hydrogen bonded C₁O mode of neutral phylloquinone.     

Half-sandwich Mo(III) complexes with asymmetric diazadiene ligands

The asymmetric 1,4-diazadiene ligands R^∗NCHCHNR^∗ [R^∗ = (S)-CH(CH₃)Ph], , and 2,2′-bis(4-ethyloxazoline), as-ox, have been used to generate half-sandwich Mo^III derivatives by addition to Cp₂Mo₂Cl₄. Ligand affords a mononuclear, paramagnetic 17-electron product, , whereas as-ox leads to the isolation of a dinuclear compound where only one molecule of ligand has been added per two Mo atoms, Cp₂Mo₂Cl₄(as-ox). In the presence of free as-ox, this compound coexists with the paramagnetic mononuclear complex in solution. Both products are capable of controlling the radical polymerization of styrene under typical atom transfer radical polymerization (ATRP) conditions. However, the tacticity of the resulting polystyrene does not differ from that given by conventional free radical polymerization.     

Identification of the first steps in charge separation in bacterial photosynthetic reaction centers of Rhodobacter sphaeroides by ultrafast mid-infrared spectroscopy: electron transfer and protein dynamics

Time-resolved visible pump/mid-infrared (mid-IR) probe spectroscopy in the region between 1600 and 1800 cm⁻¹ was used to investigate electron transfer, radical pair relaxation, and protein relaxation at room temperature in the Rhodobacter sphaeroides reaction center (RC). Wild-type RCs both with and without the quinone electron acceptor Q_A, were excited at 600 nm (nonselective excitation), 800 nm (direct excitation of the monomeric bacteriochlorophyll (BChl) cofactors), and 860 nm (direct excitation of the dimer of primary donor (P) BChls (P_L/P_M)). The region between 1600 and 1800 cm⁻¹ encompasses absorption changes associated with carbonyl (CO) stretch vibrational modes of the cofactors and protein. After photoexcitation of the RC the primary electron donor P excited singlet state (P*) decayed on a timescale of 3.7 ps to the state (where B_L is the accessory BChl electron acceptor). This is the first report of the mid-IR absorption spectrum of ; the difference spectrum indicates that the 9-keto CO stretch of B_L is located around 1670-1680 cm⁻¹. After subsequent electron transfer to the bacteriopheophytin H_L in ∼1 ps, the state was formed. A sequential analysis and simultaneous target analysis of the data showed a relaxation of the radical pair on the ∼20 ps timescale, accompanied by a change in the relative ratio of the and bands and by a minor change in the band amplitude at 1640 cm⁻¹ that may be tentatively ascribed to the response of an amide CO to the radical pair formation. We conclude that the drop in free energy associated with the relaxation of , is due to an increased localization of the electron hole on the P_L half of the dimer and a further consequence is a reduction in the electrical field causing the Stark shift of one or more amide CO oscillators.     

A glycyl free radical as the precursor in the synthesis of carbon monoxide and cyanide by the [FeFe]-hydrogenase maturase HydG

HydG uses tyrosine to synthesize the CN⁻/CO ligands of [FeFe]-hydrogenase active site. We have mutated two of the [4Fe-4S]-cluster cysteine ligands of the HydG C-terminal domain (CTD) to serine. The double mutant can still synthesize CN⁻ but not CO. In a mutant lacking the CTD both CN⁻ and CO synthesis are abolished. Like in ThiH, the initial steps of CN⁻ synthesis are carried out in the TIM-barrel domain of HydG but some component(s) of the CTD are later needed. The mutants indicate that CO synthesis is metal-based and occurs in the CTD. We postulate that CN⁻/CO synthesis is initiated by H₂N-CH-. Fragmentation of this radical into H₂N-CH₂ and CO₂ or H₂CNH and provides plausible precursors for CN⁻/CO synthesis.     

Ruthenium(II) complexes possessing the η-p-cymene ligand

Complexes possessing a soft donor η⁶-arene and hard donor acetylacetonate ligand, [(η⁶-p-cymene)Ru(κ²-O,O-acac-μ-CH)]₂[OTf]₂ (1) (OTf = trifluoromethanesulfonate; acac = acetylacetonate) and {Ar′ = 3,5-(CF₃)-C₆H₃}, were prepared and fully characterized. The lability of the μ-CH linkage for complex 1 and the THF ligand of 2 allow access to the unsaturated cation [(η⁶-p-cymene)Ru(κ²-O,O-acac)]⁺. The reaction of with KTp {Tp = hydridotris(pyrazolyl)borate} produces . The azide complex forms upon reaction of with N₃Ar (Ar = p-tolyl), and reaction of with CHCl₃ at 100 °C yields the chloride-bridged binuclear complex . The details of solid-state structures of [(η⁶-p-cymene)Ru(κ²-O,O-acac-μ-CH)]₂[OTf]₂ (1), and are disclosed.     

Synthesis and luminescence properties of [Pt{4′-(Np1)-trpy}(CCPh)]SbF6 and [Pt{4′-(Np1)-trpy}{CC(CH2)2CH3}]SbF6 [4′-(Np1)-trpy = 4′-(1-naphthyl)-2,2′:6′,2″-terpyridine]

The synthesis and characterisation of [Pt{4′-(Np1)-trpy}(CCPh)]SbF₆ (1) and [Pt{4′-(Np1)-trpy}{CC(CH₂)₂CH₃}]SbF₆ (2) [4′-(Np1)-trpy = 4′-(1-naphthyl)-2,2:6′,2′-terpyridine] are described. Complexes 1 and 2 exhibit unimolecular ³MLCT (MLCT = metal-to-ligand charge transfer) emission in acetonitrile and in a low concentration 77 K glass solution in butyronitrile. The high concentration glass emission as well as the emission in the solid state is from a ³MMLCT (MMLCT, metal-metal-to-ligand charge transfer) excited state, reflecting the presence of interactions in these media.     

The course of oxidative addition reactions of haloalkynes and haloalkenes to dimethyl- and dialkynylaurate(I) anions [RAuR]

The reactions of halo-alkynes Cl-CCH, C-lCC-Cl or PhCC-I with solutions of Li⁺[MeAuMe]⁻ in diethylether containing Ph₃P do not give the expected oxidative addition products Me₂(RCC)Au(PPh₃) with R = H, Cl, Ph. A mixture of other complexes is obtained instead which are generated in secondary reactions involving reductive elimination of ethane and/or dialkyne. However, addition of the halo-alkene H(Cl)CCCl₂ to the same substrate solution affords trans-Me₂[trans-H(Cl)CC(Cl)]Au(PPh₃) in good yield. Its molecular structure with pseudo-C_s symmetry has been determined by the solution NMR spectra and a single-crystal X-ray diffraction study. The reaction of methyl iodide with solutions of Li⁺[RCCAuCCR]⁻ in diethylether containing PPh₃ give the quaternary salts Ph₃PMe⁺ [RCCAuCCR]⁻ as the main products and only small amounts of cis-Me₂(RCC)Au(PPh₃) complexes probably formed in a series of oxidative addition, reductive elimination, and substitution reactions. The structure of Ph₃PMe⁺ [PhCCAuCCPh]⁻ has been determined.     

On the mechanism of formation and spectral properties of radical anions generated by the reduction of -[Re(CO)3(5-nitro-1,10-phenanthroline)] and -[Re(CO)3(3,4,7,8-tetramethyl-1,10-phenanthroline)] pendants in poly-4-vinylpyridine polymers

The electrochemical reduction in aprotic media of -[Re^I(CO)₃L]⁺ pendants in poly-4-vinylpyridine polymers is compared to that of [Re^I(CO)₃L]⁺ complexes (L = 5-nitro-1,10-phenanthroline and 3,4,7,8-tetramethyl-1,10-phenanthroline). The UV-Vis absorption spectra of the reduced radical anions of 5-nitro-1,10-phenanthroline (NO₂-phen) and 3,4,7,8-tetramethyl-1,10-phenanthroline (tmphen) were obtained by spectro-electrochemistry of [Re^I(CO)₃(NO₂-phen)(CH₃CN)]⁺ and [Re^I(CO)₃(tmphen)(CH₃CN)]⁺, respectively. Similar spectra were obtained for the radical anions -phen and tmphen⁻ after pulse radiolysis experiments with -[Re^I(CO)₃L]⁺-containing polymers. The analysis of the time-resolved difference spectra was performed using “multivariate curve resolution” (MCR) techniques. Unlike , CH₂OH radicals were unable to reduce tmphen ligands. The reaction of and/or CH₂OH with -[Re^I(CO)₃(NO₂-phen)]⁺-containing polymers generates -[Re^I(CO)₃(-phen)] pendants which after disproportionation give rise to products with λ_max = 380 nm. The kinetic behavior of -[Re^I(CO)₃(-phen)] pendants under different experimental conditions is discussed.     

Mixed salts containing croconate violet, lanthanide and potassium ions: Crystal structures and spectroscopic characterization of supramolecular compounds

The vibrational spectra and crystal structures of four lanthanide and potassium salts of 3,5-bis(dicyanomethylene)cyclopentane-1,2,4-trionate (), known as croconate violet (CV), are described in this work. All LnKC₂₂N₈O₆ (Ln = La⁺³, Nd⁺³, Gd⁺³ and Ho⁺³) compounds are isostructural, crystallizing in the triclinic space group. In each compound the lanthanide ion is acting as both monodentate and chelate metal sites, whereas the potassium presents only monodentate coordination. The crystal structure shows the formation of a periodic 2D structure extended by K-N bonds parallel to the crystallographic [0 0 1] direction; these 2D sheets form hydrogen bonds with water molecules giving rise to a 3D extended arrangement. It is not possible to observe any type of π-interaction and the main forces responsible to stabilize the structures are the hydrogen bonds. The vibrational spectra of all the compounds are very similar, and the most important vibrational markers for the croconate violet ion, namely the ν(CN) and ν(CO) modes, behave differently: the ν(CN) modes are not shifted by the presence of the lanthanide ion species, only showing small band intensity differences, whereas the ν(CO) bands are shifted to higher wavenumbers, due to their coordination to the metal sites.     

Layered (2-D) structure of [Ru2(O2CMe)4]2[Ni(CN)4] determined via Rietveld refinement of synchrotron powder diffraction data

Reaction of [Ru₂(O₂CMe)₄]Cl and K₂[Ni(CN)₄] forms [Ru₂(O₂CMe)₄]₂[Ni(CN)₄] with the targeted layered structure possessing Ru-NCNi linkages, albeit strained, with Ru-NC and Ni-CN angles in the range of 147-167°. The magnetic properties of [Ru₂(O₂CMe)₄]₂[Ni(CN)₄] can be fit to a zero-field splitting model with D/k_B = 95 K (66 cm⁻¹).     

In situ spectroelectrochemical investigation of Pt(II/IV) oxidation in aqueous solution using X-ray absorption spectroscopy

The oxidation from to in HCl aq. was studied in situ by combining electrochemistry with XAFS spectroscopy. During the oxidation of , isosbestic points were observed in Pt L_III and L_II XANES spectra as a function of time, indicating that the Pt(II/IV) redox equilibrium is the only reaction in the system. The Pt L_III and L_II X-ray absorption edge energies of the initial Pt^IICl₄²⁻ are 11562.9 and 13271.8 eV, respectively, while those of the electrolyzed species are 11564.6 and 13273.7 eV which are identical with those of a reference sample. The coordination of the electrolyzed species was characterized by structural parameters derived from the EXAFS curve fit, and identified to .     

Synthesis, structure and reactions of a series of 1,2-dicyanoethylenedithiolate coordinated dimeric Mo(V) complexes

(where mnt = 1,2-dicyanoethylenedithiolate) (1), reacts with HX (X = SPh, Cl, Br) to form a series of complexes, . In acidic-alcoholic medium 1 with thiophenol yields another series of compounds, . Under similar conditions tertiary-butanol does not coordinate where a complex can only be isolated in the presence of bromide as . The use of excess of methanesulfonic acid in the presence of HSPh or HSEt facilitates methanesulfonate coordination in complexes, . All these complexes are structurally characterized by single crystal X-ray study. These complexes show pH dependent hydrolytic reaction leading to quantitative reversal to the starting complex, 1. Complexes 2a-c respond to hydrolysis in CH₂Cl₂ with the intermediate formation of EPR active molybdenum(V) species.     

H2O2 and (.)NO scavenging by Mycobacterium leprae truncated hemoglobin O

Kinetics of ferric Mycobacterium leprae truncated hemoglobin O (trHbOFe(III)) oxidation by H₂O₂ and of trHbOFe(IV)O reduction by NO and NO₂⁻ are reported. The value of the second-order rate constant for H₂O₂-mediated oxidation of trHbOFe(III) is 2.4 × 10³ M⁻¹ s⁻¹. The value of the second-order rate constant for NO-mediated reduction of trHbOFe(IV)O is 7.8 × 10⁶ M⁻¹ s⁻¹. The value of the first-order rate constant for trHbOFe(III)ONO decay to the resting form trHbOFe(III) is 2.1 × 10¹ s⁻¹. The value of the second-order rate constant for NO₂⁻-mediated reduction of trHbOFe(IV)O is 3.1 × 10³ M⁻¹ s⁻¹. As a whole, trHbOFe(IV)O, generated upon reaction with H₂O₂, catalyzes NO reduction to NO₂⁻. In turn, NO and NO₂⁻ act as antioxidants of trHbOFe(IV)O, which could be responsible for the oxidative damage of the mycobacterium. Therefore, Mycobacterium leprae trHbO could be involved in both H₂O₂ and NO scavenging, protecting from nitrosative and oxidative stress, and sustaining mycobacterial respiration.     

Pressure-tuning infrared and Raman spectra of trans-dichloro-bis[(diperfluoroethyl)phenylphosphine]platinum(II), trans-Pt[PPh(CF3CF2)2]2Cl2

Infrared and Raman spectra of solid trans-dichloro-bis[diperfluoroethyl(phenyl)phosphine]platinum(II), trans-Pt[PPh(CF₃CF₂)₂]₂Cl₂, have been studied at high external pressures up to ∼50 kbar with the aid of a diamond-anvil cell. A gradual, pressure-induced phase transition, most probably second order, was observed in the 21-34 kbar pressure range. In the IR spectra, the bands assigned to the CF stretching modes of the CF₃ groups exhibit larger pressure sensitivities than do those associated with the CF stretching modes of the CF₂ groups, most probably because of their physical location on the outside in the molecules in the unit cell. The fairly high pressure sensitivities of the symmetric PtCl stretching mode in both the low and high pressure phases (0.46 and 37 cm⁻¹/kbar, respectively) are considered to reflect the low force constant associated with the long PtCl bond length thus making this vibration more susceptible to compression.     

Synthesis and coordination of the bifunctionalized ylides Ph2P(CH2)n(Ph)2PCHCOOMe (n = 1, 2) and ketenylidene Ph2P(CH2)2(Ph)2PCCO to Pd and Pt complexes

In this paper it is reported the synthesis of the phosphonium salts [Ph₂P(CH₂)_n(Ph)₂PCH₂COOMe]Br (n = 1 (1), 2 (2)) and [Ph₂P(CH₂COOMe)(CH₂)_n(Ph)₂PCH₂COOMe]Br₂ (n = 3 (3)) derived from the reactions of the diphosphines dppm, dppe and dppp with methyl bromoacetate. By reaction of the monophosphonium salt of dppm and dppe with the strong base Na[N(SiMe₃)₂] the corresponding carbonyl stabilized ylides Ph₂P(CH₂)_n(Ph)₂PCHCOOMe (n = 1 (4), 2 (5)) were obtained. The Ph₂P(CH₂)₂(Ph)₂PCHCOOMe (5) ylide was reacted with Pd(II) and Pt(II) substrates. From these reactions were isolated exclusively complexes in which the ylide was chelated to the metal through the free phosphine group and the ylidic carbon atom. A further reaction of the Ph₂P(CH₂)₂(Ph)₂PCHCOOMe (5) ylide with 1.5 equiv. of Na[N(SiMe₃)₂] gives the bifunctionalized ketenylidene Ph₂P(CH₂)₂(Ph)₂PCCO (6) system. This cumulenic ylide reacts with Pt(II) complexes to form a chelated derivative in which IR and NMR spectra suggest the breaking of the CC bond of the -CCO group.     

Iridium(III)-vinylidene chemistry: Conversion of an iridacyclopentadiene-chlorido complex and terminal alkynes to iridacyclopentadiene-vinyl complexes

The reactions of [κ²(C¹,C⁴)-CRCRCRCR](PPh₃)₂Ir(Cl) (9, R = CO₂Me) with propargyl alcohol derivatives (2-propyn-1-ol, 2-methyl-3-butyn-2-ol, 1-ethynylcyclopentanol, and 1-ethynylcyclooctanol), in the presence of water leads to the formation of iridium(III)-vinyl complexes bearing the general structure [κ²(C¹,C⁴)-CRCRCRCR](PPh₃)₂Ir(CO)(κ¹-vinyl) where vinyl = -CHCH₂, -(E)-CHCHMe, -CHC(CH₂)₄, or -CHC(CH₂)₇. In these, the CO ligand was derived from the terminal carbon of the starting alkyne and the oxygen atom from water. Under anhydrous conditions, 9 undergoes reaction with 2-propyn-1-ol to give trimethyl 1,3-dihydro-3-oxo-4,5,6-isobenzofurantricarboxylate, the result of a cycloaromatization/transesterification involving the buta-1,3-dien-1,4-diyl ligand in 9 and 2-propyn-1-ol.