Teilhard de Chardin,human evolution and “Piltdown Man”

Pierre Teilhard de Chardin was a French Jesuit paleontologist, priest, and philosopher. In the figures published in articles in 1943 and 1951, he attempted to draw a “plausible schematic reconstruction of the natural connections between fossil men” and a “phyletic composition of the human group”. I draw attention to Teilhard's reference to Eoanthropus (“Piltdown Man”) in small print in his figure that was first printed in 1943. Most suspiciously, there is no reference to this (supposedly important) genus in the associated text, nor is there any reference whatsoever to “Piltdown Man” in the article published in 1951. Even as early as January 1913, Teilhard may have been aware that “Piltdown Man” was a hoax or joke, artificially associating a human cranium with a modified orangutan mandible. A new suspect is Edgar Willett (rather than Charles Dawson). Teilhard may have been an advisory accomplice in a joke that went seriously wrong.     

The story of a largely unknown evolution – Germ theory hoax

The Piltdown Man debacle provides us with the most infamous forgery in science. However, another equally intriguing story exists concerning a document by a Bostonian called George Sleeper, which purported to be a pre-Darwin–Wallace anticipation of evolution and an equally convincing account of the germ theory published before Louis Pasteur’s famous studies on this subject. The story involves two giants in the world of evolutionary theory, Alfred Russel Wallace and E.B. Poulton. While Wallace was convinced that the Sleeper document was genuine, Poulton’s detailed investigations showed that it was a fake and a hoax. Despite this conclusion, doubts still exist about the authenticity of the Sleeper document.     

The Piltdown forgery: a re-statement of the case against Hinton

A review of the evidence supports the conclusion reached by Gardiner and Currant in 1996 that the hoaxer was Martin Hinton, who worked in the Geology and Zoology Departments of the Natural History Museum throughout the Piltdown affair. This was based primarily on the discovery in 1978 of a cabin trunk in the loft space immediately above what had been the office of the Keeper of Zoology − which post Hinton occupied between 1936 and 1945. This contained material similarly stained to that discovered at Piltdown, while several of the pieces had also been whittled in an identical fashion to the last find at Piltdown – the notorious 'cricket bat'. Additional proof came from Hinton's executor who discovered eight human teeth varyingly stained in a tobacco tin of Hinton's. These revealed that the forger used two methods for staining his material, one of which involved decalcification, a process which converted apatite into gypsum, the other of which did not. The material in the trunk was stained using the first method, the teeth obtained from his executor, the second. The analyses of the contents of the trunk (carried out in 1995−6) and of the tobacco tin (1997−8) are reported for the first time.  © 2003 The Linnean Society of London, Zoological Journal of the Linnean Society, 2003, 139 , 315−335.     

Recollections of a reluctant anthropologist

In this issue designed to mark his own eightieth year, the author recalls some of the biological, neurological and anthropological events experienced prior to, during and after graduation and overseas service during the First World War. These concentrated his attention upon cranial morphology and its potential illumination by a neurological approach. This was initiated in 1915 with J. T. Wilson in Sydney and deepened with Sir Grafton Elliot Smith at University College, London, and by 1920–1921 in America, as one of the two initial foreign fellows of the Rockefeller Foundation. But Joseph L. Shellshear's anatomical professorship in Hongkong (1921) precluded further collaboration, and a maximal postponement of neurological heterodoxies followed his own going to Johannesburg in 1922.Despite the Taung, Sterkfontein and Makapansgat discoveries (1925–1958) and the exposure of the Piltdown hoax (1953), it was not until similar entities had been unearthed from 1959 onwards in the Olduvai Gorge and, still more recently along the Omo River and Lake Rudolf, nor until the physicists, by introducing isotope dating, had transformed speculation about time into reality by means of isotopic dating, that the relative antiquity of the australopithecine phase through which the human stock had passed in Africa became undeniable. Meanwhile the enrichment in humanity's understanding of itself through this half-century and the Primate studies that the foregoing events and concurrent space programmes have inspired, reveal the advantages to humanity as a whole of the information that has been gained both directly and indirectly, and the potential importance of phylogeny for future human persistence as a rational species.     

NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation

N-terminal acetylation (N-Ac) is a highly abundant eukaryotic protein modification. Proteomics revealed a significant increase in the occurrence of N-Ac from lower to higher eukaryotes, but evidence explaining the underlying molecular mechanism(s) is currently lacking. We first analysed protein N-termini and their acetylation degrees, suggesting that evolution of substrates is not a major cause for the evolutionary shift in N-Ac. Further, we investigated the presence of putative N-terminal acetyltransferases (NATs) in higher eukaryotes. The purified recombinant human and Drosophila homologues of a novel NAT candidate was subjected to in vitro peptide library acetylation assays. This provided evidence for its NAT activity targeting Met-Lys- and other Met-starting protein N-termini, and the enzyme was termed Naa60p and its activity NatF. Its in vivo activity was investigated by ectopically expressing human Naa60p in yeast followed by N-terminal COFRADIC analyses. hNaa60p acetylated distinct Met-starting yeast protein N-termini and increased general acetylation levels, thereby altering yeast in vivo acetylation patterns towards those of higher eukaryotes. Further, its activity in human cells was verified by overexpression and knockdown of hNAA60 followed by N-terminal COFRADIC. NatF's cellular impact was demonstrated in Drosophila cells where NAA60 knockdown induced chromosomal segregation defects. In summary, our study revealed a novel major protein modifier contributing to the evolution of N-Ac, redundancy among NATs, and an essential regulator of normal chromosome segregation. With the characterization of NatF, the co-translational N-Ac machinery appears complete since all the major substrate groups in eukaryotes are accounted for.     

Natural selection and the origin and maintenance of standard genetic marker systems

Natural selection has always been assumed to be the major force of evolution, but its presence has been difficult to demonstrate. A review of the evidence for selective differences among genotypes for most human genetic polymorphisms indicates there is little of a direct nature. Indirect theoretical evidence, however, seems to support a major role for natural selection, and it does not seem to support the hypothesis that most amino acid substitutions within the human species are neutral. Among small isolates, most of the gene frequency differences are most likely due to genetic drift or the founder effect, and the principal counterbalancing force is gene flow or migration. But genetic differences among the major human subdivisions do not seem to be due to the same interacting forces. One reason for the inability to detect selection has been an oversimplified view of its operation, which assigns genotypes a constant fitness in every generation. Many recent theoretical developments of more complicated kinds of selection may lead to a resolution of the problem and suggest better interpretations of the enormous amount of data on human genetic variation that is rapidly accumulating.     

Intra- and interspecific variation of the CCR5 gene in higher primates

We have evaluated the molecular evolution of the chemokine receptor CCR5 in primates. The chemokine receptor CCR5 serves as a major co-receptor for human immunodeficiency virus/simian immunodeficiency virus (HIV/SIV) infection. Knowledge of evolution of the CCR5 molecule and selection on the CCR5 gene may shed light on its functional role. The comparison of differences between intraspecific polymorphisms and interspecific fixed substitutions provides useful information regarding modes of selection during the course of evolution. There is marked polymorphism in the CCR5 gene sequence within different primate species, whereas sequence divergence between different species is small. By using contingency tests, we compared synonymous (SS) and nonsynonymous (NS) CCR5 mutations occurring within and between a broad range of primates. Our results demonstrate that CCR5 evolution did not follow expectations of strict neutrality at the level of the whole gene. The proportion of NS to SS at the intraspecific level was significantly higher than that observed at the interspecific level. These results suggest that most CCR5 NS polymorphisms are slightly deleterious. However, at domains more closely correlated with its known biological functions, there was no obvious evidence to support deviation from neutrality.     

Evolution of the human ASPM gene, a major determinant of brain size

The size of human brain tripled over a period of approximately 2 million years (MY) that ended 0.2-0.4 MY ago. This evolutionary expansion is believed to be important to the emergence of human language and other high-order cognitive functions, yet its genetic basis remains unknown. An evolutionary analysis of genes controlling brain development may shed light on it. ASPM (abnormal spindle-like microcephaly associated) is one of such genes, as nonsense mutations lead to primary microcephaly, a human disease characterized by a 70% reduction in brain size. Here I provide evidence suggesting that human ASPM went through an episode of accelerated sequence evolution by positive Darwinian selection after the split of humans and chimpanzees but before the separation of modern non-Africans from Africans. Because positive selection acts on a gene only when the gene function is altered and the organismal fitness is increased, my results suggest that adaptive functional modifications occurred in human ASPM and that it may be a major genetic component underlying the evolution of the human brain.     

Impoverished encoding of speaker identity in spontaneous laughter

Our ability to perceive person identity from other human voices has been described as prodigious. However, emerging evidence points to limitations in this skill. In this study, we investigated the recent and striking finding that identity perception from spontaneous laughter - a frequently occurring and important social signal in human vocal communication - is significantly impaired relative to identity perception from volitional (acted) laughter. We report the findings of an experiment in which listeners made speaker discrimination judgements from pairs of volitional and spontaneous laughter samples. The experimental design employed a range of different conditions, designed to disentangle the effects of laughter production mode versus perceptual features on the extraction of speaker identity. We find that the major driving factor of reduced accuracy for spontaneous laughter is not its perceived emotional quality but rather its distinct production mode, which is phylogenetically homologous with other primates. These results suggest that identity-related information is less successfully encoded in spontaneously produced (laughter) vocalisations. We therefore propose that claims for a limitless human capacity to process identity-related information from voices may be linked to the evolution of volitional vocal control and the emergence of articulate speech.     

Comparative genomics and the evolution of human mitochondrial DNA: assessing the effects of selection

This article provides evidence that selection has been a significant force during the evolution of the human mitochondrial genome. Both gene-by-gene and whole-genome approaches were used here to assess selection in the 560 mitochondrial DNA (mtDNA) coding-region sequences that were used previously for reduced-median-network analysis. The results of the present analyses were complex, in that the action of selection was not indicated by all tests, but this is not surprising, in view of the characteristics and limitations of the different analytical methods. Despite these limitations, there is evidence for both gene-specific and lineage-specific variation in selection. Whole-genome sliding-window approaches indicated a lack of selection in large-scale segments of the coding region. In other tests, we analyzed the ratio of nonsynonymous-to-synonymous substitutions in the 13 protein-encoding mtDNA genes. The most straightforward interpretation of those results is that negative selection has acted on the mtDNA during evolution. Single-gene analyses indicated significant departures from neutrality in the CO1, ND4, and ND6 genes, although the data also suggested the possible operation of positive selection on the AT6 gene. Finally, our results and those of other investigators do not support a simple model in which climatic adaptation has been a major force during human mtDNA evolution.     

Increased breathing control: Another factor in the evolution of human language

Investigation into the evolution of human language has involved evidence of many different kinds and approaches from many different disciplines. For full modern language, humans must have evolved a range of physical abilities for the production of our complex speech sounds, as well as sophisticated cognitive abilities. Human speech involves free‐flowing, intricately varied, rapid sound sequences suitable for the fast transfer of complex, highly flexible communication. Some aspects of human speech, such as our ability to manipulate the vocal tract to produce a wide range of different types of sounds that form vowels and consonants, have attracted considerable attention from those interested in the evolution of language. 1 , 2 However, one very important contributory skill, the human ability to attain very fine control of breathing during speech, has been neglected. Here we present evidence of the importance of breathing control to human speech, as well as evidence that our capabilities greatly exceed those of nonhuman primates. Human speech breathing demands fine neurological control of the respiratory muscles, integrated with cognitive processes and other factors. Evidence from comparison of the vertebral canals of fossil hominids and those of extant primates suggests that a major increase in thoracic innervation evolved in later hominid evolution, providing enhanced breathing control. If that is so, then earlier hominids would have had quite restricted speech patterns, whereas more recent hominids, with human‐like breath control abilities, would have been capable of faster, more varied speech sequences.     

The archeology of modern human origins

Two competing hypotheses have long dominated specialist thinking on modern human origins. The first posits that modern people emerged in a limited area and spread from there to replace archaic people elsewhere. Proponents of this view currently favor Africa as the modern human birthplace.^1–5 The second suggests that the evolution of modern humans was not geographically restricted, but invlved substantial continuity between archaic and modern populations in all major regions of the occupied world.^6–7 Based solely on the fossil record, both hypotheses are equally defensible, but the spread-and-replationships scenario is far more strongly supported by burgeoning data on the genetic relationships and diversity of living humans.^8–16 These data impy that there was a common ancestor for all living humans in Africa between 280,000 and 140,000 year ago, and that Neanderthals and other archaic humans who inhabited Eurasia during the same interval contributed few, if any, genes to living peiple. I argue here that the spread-and-replacement hypothesis is also more compatible with a third line of evidence: the spread-and-replacement hypothesis is also more compatible with a third line of evidence: the archeological record for human behavioral evolution.     

Human Evolution and Education in Slovene Schools

This article discusses the importance and benefits of providing lower secondary school students with some knowledge of human evolution and its educational context. The author surveyed science teaching in secondary and upper secondary schools in Slovenia and concluded that evolution in general, and human evolution in particular, do not feature prominently in the curriculum and so are not represented by many teaching contact hours. Neither are popular, well-designed, and up-to-date books on the subject--whether by Slovene authors or in translation--readily available to interested students. And yet, paleoanthropology??the study of human evolution in its wider context??is a rapidly developing, high-profile branch of science with major popular appeal. Recent discoveries??many of them spectacular??have provided a much more detailed picture of human evolutionary history, significantly modifying earlier ideas about our ancestry. The subject not only attracts much public interest but also has major educational benefits: human evolution exemplifies many general evolutionary principles, illustrates the synergy of focused multidisciplinary approaches in the life sciences, and reinforces teaching of environmental conservation, human relations, and social responsibility. Because of the subject??s importance, the author provides some suggestions on how the teaching of human evolution might be incorporated into the school curriculum and considers some of the educational resources available to support its teaching.     

Transposable elements and the evolution of eukaryotic complexity

Eukaryotic transposable elements are ubiquitous and widespread mobile genetic entities. These elements often make up a substantial fraction of the host genomes in which they reside. For example, approximately 1/2 of the human genome was recently shown to consist of transposable element sequences. There is a growing body of evidence that demonstrates that transposable elements have been major players in genome evolution. A sample of this evidence is reviewed here with an emphasis on the role that transposable elements may have played in driving the evolution of eukaryotic complexity. A number of specific scenarios are presented that implicate transposable elements in the evolution of the complex molecular and cellular machinery that are characteristic of the eukaryotic domain of life.     

A rhesus macaque radiation hybrid map and comparative analysis with the human genome

The genomes of nonhuman primates are powerful references for better understanding the recent evolution of the human genome. Here we compare the order of 802 genomic markers mapped in a rhesus macaque (Macaca mulatta) radiation hybrid panel with the human genome, allowing for nearly complete cross-reference to the human genome at an average resolution of 3.5 Mb. At least 23 large-scale chromosomal rearrangements, mostly inversions, are needed to explain the changes in marker order between human and macaque. Analysis of the breakpoints flanking inverted chromosomal segments and estimation of their duplication divergence dates provide additional evidence implicating segmental duplications as a major mechanism of chromosomal rearrangement in recent primate evolution.     

Between-host evolution of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1: an approach based on phylogenetically independent comparisons

In human immunodeficiency virus type 1 (HIV-1), mutations that escape from cytotoxic T-lymphocyte (CTL) recognition have been documented, and sequence analyses have provided indirect support for the hypothesis that natural selection has favored CTL escape mutants within an infected host. In spite of such evidence for within-host selection by CTL, it has been more difficult to determine how natural selection by host CTL has influenced long-term evolution of HIV-1. We used statistical analysis of published HIV-1 genomic sequences to examine the role of natural selection in between-host evolution of CTL epitopes. Based on a phylogenetic analysis, we identified 21 pairs of closely related genomes isolated from different hosts and examined the pattern of nucleotide substitution in genomic regions encoding well-characterized CTL epitopes. The results revealed that certain CTL epitopes have been subject to repeated positive selection across the population, while others are generally conserved. Furthermore, evidence of positive selection was associated with divergence from the canonical epitope sequence and with an enhanced frequency of convergent amino acid sequence changes in CTL epitopes. The results support the hypothesis that CTL-driven selection has been a major factor in the long-term evolution of HIV-1.     

Positive selection at the ASPM gene coincides with brain size enlargements in cetaceans

The enlargement of cetacean brain size represents an enigmatic event in mammalian evolution, yet its genetic basis remains poorly explored. One candidate gene associated with brain size evolution is the abnormal spindle-like microcephaly associated (ASPM), as mutations in this gene cause severe reductions in the cortical size of humans. Here, we investigated the ASPM gene in representative cetacean lineages and previously published sequences from other mammals to test whether the expansion of the cetacean brain matched adaptive ASPM evolution patterns. Our analyses yielded significant evidence of positive selection on the ASPM gene during cetacean evolution, especially for the Odontoceti and Delphinoidea lineages. These molecular patterns were associated with two major events of relative brain size enlargement in odontocetes and delphinoids. It is of particular interest to find that positive selection was restricted to cetaceans and primates, two distant lineages both characterized by a massive expansion of brain size. This result is suggestive of convergent molecular evolution, although no site-specific convergence at the amino acid level was found.     

朝向人类起源与演化研究的共业:古人类学、考古学与遗传学的交叉与整合

对于方兴未艾的现代人类起源与演化问题的研究,目前主要在遗传学、古人类学和旧石器时代考古学三个领域内进行。学者们提出了"多地区进化说"、"连续进化附带杂交说"、"出自非洲说"、"融合说"等观点与假说,有的学说针锋相对,南辕北辙。究其原因,除了相关研究还处于盲人摸象的阶段,只是在局部问题与材料上做分析和解释,尚无法得出全面、能被普遍接受的结论外,由于不同学科存在研究对象、方法和思路的不同,学科间缺少了解、沟通与协作,出现一些学术语言和研究结论不被彼此理解和接受的情况,存在一定的误解与无谓的争论,影响了相互之间的借鉴、互动和成果的共享,进而妨碍了跨学科的整合研究并达成学术共识。其实,每个学科都有自己的特点和不可替代的优势,每个学科也有难以克服的弱点,在解决人类起源与演化这样重大的学术问题上,任何一个学科都不可能包打天下,独享其成。因而,开展相关领域的交流合作,尤其是传统的古人类学、考古学与新兴的分子生物学之间的交叉与协作,明确彼此的关注点、需求和专长,凝练共同的学术问题和目标,整合现有的研究问题、资源与成果并向着共同的学术方向一道前行,是推动相关研究走向深入并破译现代人起源这一重大命题的必要举措。     

Divergent patterns of integration and reduced constraint in the human hip and the origins of bipedalism

When compared to other hominids--great apes including humans--the human pelvis reveals a fundamental reorganization of bony morphology comprised of multiple trait-level changes, many of which are associated with bipedal locomotion. Establishing how patterns of integration--correlations and covariances among traits--within the pelvis have evolved in concert with morphology is essential to explaining this evolutionary transition because integration may facilitate or constrain morphological evolution. Here, we show that the human hip bone has significantly lower levels of integration and constraint overall when compared to other hominids, that the focus of these changes is on traits hypothesized to play major functional roles in bipedalism, and we provide evidence that the human hip was reintegrated in a pattern distinct from other members of this group. Additionally, the evolutionary transition from a nonhuman great ape-like to human hip bone morphology was significantly easier to traverse using the human integration pattern in each comparison, which suggests hominin patterns may have evolved to facilitate this transition. Our results suggest natural selection for bipedalism broke down earlier hominid integration patterns, allowing relevant traits to respond to separate selection pressures to a greater extent than was previously possible, and reintegrated traits in a way that could have facilitated evolution along the vector specifying ancestral hominid and hominin morphological differences.     

Recombination in the genesis and evolution of hepatitis B virus genotypes

Hepatitis B virus (HBV) infection is widely distributed in both human and ape populations throughout the world and is a major cause of human morbidity and mortality. HBV variants are currently classified into the human genotypes A to H and species-associated chimpanzee and gibbon/orangutan groups. To examine the role of recombination in the evolution of HBV, large-scale data retrieval and automated phylogenetic analysis (TreeOrder scanning) were carried out on all available published complete genome sequences of HBV. We detected a total of 24 phylogenetically independent potential recombinants (different genotype combinations or distinct breakpoints), eight of which were previously undescribed. Instances of intergenotype recombination were observed in all human and ape HBV variants, including evidence for a novel gibbon/genotype C recombinant among HBV variants from Vietnam. By recording sequence positions in trees generated from sequential fragments across the genome, violations of phylogeny between trees also provided evidence for frequent intragenotype recombination between members of genotypes A, D, F/H, and gibbon variants but not in B, C, or the Asian B/C recombinant group. In many cases, favored positions for both inter- and intragenotype recombination matched positions of phylogenetic reorganization between the human and ape genotypes, such as the end of the surface gene and the core gene, where sequence relationships between genotypes changed in the TreeOrder scan. These findings provide evidence for the occurrence of past, extensive recombination events in the evolutionary history of the currently classified genotypes of HBV and potentially in changes in its global epidemiology and associations with human disease.