Occurrence of formaldehyde in intact plants, micropropagated plants and hairy root cultures of chamomile (Matricaria recutita L.)

In different parts of both micropropagated and intact(ordinary, soil-grown) chamomile plants and in hairyroot cultures of this species, formaldehyde (HCHO) indimedone adduct form was identified and quantified byan automatic OPLC instrument using authenticformaldemethone as a standard. The amount of HCHObound by the dimedone reagent increases as theconcentration of dimedone is increased, until amaximum is reached. The HCHO detected is thought to bederived from metabolically-labile hydroxymethylgroups, and suggests that some as yet unidentifiedhydroxymethyl-containing molecule in chamomile mayplay an important role in the metabolism of this commonmedicinal plant.     

Intergeneric hybridization of marguerite (Argyranthemum frutescens (L.) Sch. Bip.) and Roman chamomile (Chamaemelum nobile (L.) All.) using ovule culture and confirmation of hybridity

To introduce useful characteristics such as fragrance into Argyranthemum frutescens (L.) and to expand the variation, we conducted crosses using A. frutescens as the seed parent and Chamaemelum nobile (L.) All. as the pollen parent. All the tested cross combinations between the three strains of A. frutescens and one strain of C. nobile produced embryos, and healthy plants were obtained by ovule culture. The obtained plantlets had a white ray floret, and the leaf shape was intermediate to those of the parents. The individuals obtained from this cross were subjected to two methods to determine hybridity: flow cytometry analyses and cleaved amplified polymorphic sequence (CAPS) markers. For the CAPS marker, we selected the internal transcribed spacer (ITS) region, which is highly variable among the genera, as the region to be amplified. We selected restriction enzymes BmgT120 I and Afl II, which selectively cut common sequences in the genus Argyranthemum, based on the sequence analysis of one parent strain each of A. frutescens and C. nobile and alignment with known sequences of related species. Flow cytometry analyses and CAPS markers revealed that the individuals obtained from the cross between A. frutescens and C. nobile are intergeneric hybrids. In addition, these established methods were capable of quickly and reliably identifying hybrids between A. frutescens and C. nobile. This report shows for the first time that crossbreeding between A. frutescens (seed parent) and C. nobile (pollen parent) is possible, and further development of Argyranthemum breeding, such as the expansion of variation by intergeneric crosses, is expected.     

Inhibitory effects of the essential oil of chamomile (Matricaria recutita L.) and its major constituents on human cytochrome P450 enzymes

Chamomile extracts and tea are widely used herbal preparations for the treatment of minor illnesses (e.g. indigestion, inflammation). In this study the inhibitory effect of chamomile essential oil and its major constituents on four selected human cytochrome P450 enzymes (CYP1A2, CYP2C9, CYP2D6 and CYP3A4) was investigated. Increasing concentrations of the test compounds were incubated with individual, recombinant CYP isoforms and their effect on the conversion of surrogate substances was measured fluorometrically in 96-well plates; enzyme inhibition was expressed as IC50 and Ki value in relation to positive controls. Crude essential oil demonstrated inhibition of each of the enzymes, with CYP1A2 being more sensitive than the other isoforms. Three constituents of the oil, namely chamazulene (IC50 = 4.41 microM), cis-spiroether (IC50 = 2.01 microM) and trans-spiroether (IC50 = 0.47 microM) showed to be potent inhibitors of this enzyme, also being active towards CYP3A4. CYP2C9 and CYP2D6 were less inhibited, only chamazulene (IC50 = 1.06 microM) and alpha-bisabolol (IC50 = 2.18 microM) revealed a significant inhibition of the latter. As indicated by these in vitro data, chamomile preparations contain constituents inhibiting the activities of major human drug metabolizing enzymes; interactions with drugs whose route of elimination is mainly via cytochromes (especially CYP1A2) are therefore possible.     

Headspace-solid-phase microextraction fast GC in combination with principal component analysis as a tool to classify different chemotypes of chamomile flower-heads (Matricaria recutita l.)

Headspace-solid-phase microextraction gas chromatography-principal component analysis (HS-SPME GC-PCA) is proposed as a complementary or alternative method to essential oil (EO) GC-PCA in order to discriminate between flower-heads of chamomile of different chemotypes. Ninety-two EOs and the headspaces sampled by HS-SPME of the corresponding chamomile flower-heads were examined by conventional GC and fast GC (F-GC) and the results submitted to statistical analysis by PCA. HS-SPME F-GC-PCA showed itself to be a rapid technique by which to distinguish chamomile flower-head chemotypes a produced results in agreement with the accepted EO classification. Using this method, the analysis time was reduced from at least 4.5 h with EO conventional GC to less than 1 h with HS-SPME F-GC. This approach can thus successfully be used as an analytical decision maker in order to reduce the number of time-consuming EO conventional GC analyses by limiting them to those samples that cannot unequivocally be classified. The EO conventional GC and HS-SPME F-GC results of PCA were very uniform, but they did not provide quantitative correlations between the components as determined by the two methods. A different statistical approach and a larger number of samples will be needed in order to correlate components in the headspace sampled by SPME and those in the corresponding EO quantitatively through a function.     

Induction of somatic embryogenesis and in vitro flowering from inflorescences of chamomile (Chamomilla recutita L.)

A protocol has been developed for the induction of somatic embryogenesis from flower explants of chamomile (Chamomilla recutita L.). The effects of several plant growth regulators [α-naphthylacetic acid (NAA), 2,4-dichlorophenoxyacetic acid, 6-benzyladenine (BA) and kinetin (Kin), alone or in combination] and the flower type (disk or ray flower) were investigated. Both types of flowers responded to the callus and shoot induction treatments, but formation of globular somatic embryos took place only on disk-flower-derived explants after 2–4 weeks of culture on a Murashige and Skoog (MS) medium supplemented either with 8.87 μm BA and 1.07 μm NAA or with 26.8 μm NAA and 11.5 μm Kin. However, fully developed, cotyledonary-stage somatic embryos could be induced only on the NAA/Kin medium, 10 weeks after culture initiation. Germination of the embryos and plant regeneration took place after subculture for 4–5 weeks onto medium of the same composition. Plantlets regenerated from embryos flowered in vitro on a MS medium supplemented with 8.87 μm BA and 1.07 μm NAA. The significance of the results with respect to chamomile micropropagation and the utilization of wild populations in breeding programs is discussed. Received: 6 April 1998 / Revision received: 12 October 1998 / Accepted: 28 October 1998     

Colletotrichum sp: A potential candidate for biocontrol of scentless chamomile (Matricaria perforata) in western Canada

Based on an assessment of 706 fungal isolates obtained from Canada and Europe, a group of Colletotrichum sp. isolates, tentatively identified as C. truncatum, was moderately efficacious for biocontrol of scentless chamomile (Matricaria perforata). In this study, 19 C. truncatum isolates, 11 from Canada and eight from Europe, were compared for virulence, crop safety, and minimum dew requirement for infection to narrow the selection of candidates. Applied at 1×10⁶ spores mL^-1, these isolates expressed variable virulence under controlled environments, with slightly higher variations observed on the Canadian isolates. There was also a slight difference in host specificity among the isolates tested; most isolates caused disease only on chamomile species (M. perforata and M. recutita) but two Canadian isolates also infected lentil, flax, or both. At 20°C, most isolates required more than 20 h dew for maximum infection. This requirement can be an impediment for using this fungus as a biocontrol agent in western Canada where the climate is semi-arid. Treatment of scentless chamomile at the 10-leaf stage with the herbicide metribuzin 48 h prior to fungal inoculation increased weed control to 72%, compared to 40 and 47% by the herbicide and fungus applied alone. However, a similar treatment using the herbicide bentazon did not enhance the weed control significantly as compared to the herbicide alone.     

Isolation, identification and stability of acylated derivatives of apigenin 7-O-glucoside from chamomile (Chamomilla recutita [L.] Rauschert)

The major flavonoids in the white florets of chamomile (Chamomilla recutita [L.] Rauschert) were rapidly purified using a combination of polyamide solid-phase extraction and preparative HPLC. From the combined LC/MS, LC/MS/MS, and NMR data the apigenin glucosides were identified as apigenin 7-O-glucoside (Ap-7-Glc), Ap-7-(6″-malonyl-Glc), Ap-7-(6″-acetyl-Glc), Ap-7-(6″-caffeoyl-Glc), Ap-7-(4″-acetyl-Glc), Ap-7-(4″-acetyl,6″-malonyl-Glc), and a partially characterised apigenin-7-(mono-acetyl/mono-malonylglucoside) isomer. Malonyl and caffeoyl derivatives of Ap-7-Glc have not previously been identified in chamomile. The two mono-acetyl/mono-malonyl flavonoids have not previously been reported in any plant species. These acylated glucosides are unstable and degrade to form acetylated compounds or Ap-7-Glc. The degradation products formed are dependent on the extraction and storage conditions, i.e. temperature, pH and solvent.     

Biological and molecular analysis of the pathogenic variant C3 of potato spindle tuber viroid (PSTVd) evolved during adaptation to chamomile (Matricaria chamomilla)

Abstract Viroid-caused pathogenesis is a specific process dependent on viroid and host genotype(s), and may involve viroid-specific small RNAs (vsRNAs). We describe a new PSTVd variant C3, evolved through sequence adaptation to the host chamomile (Matricaria chamomilla) after biolistic inoculation with PSTVd-KF440-2, which causes extraordinary strong ('lethal') symptoms. The deletion of a single adenine A in the oligoA stretch of the pathogenicity (P) domain appears characteristic of PSTVd-C3. The pathogenicity and the vsRNA pool of PSTVd-C3 were compared to those of lethal variant PSTVd-AS1, from which PSTVd-C3 differs by five mutations located in the P domain. Both lethal viroid variants showed higher stability and lower variation in analyzed vsRNA pools than the mild PSTVd-QFA. PSTVd-C3 and -AS1 caused similar symptoms on chamomile, tomato, and Nicotiana benthamiana, and exhibited similar but species-specific distributions of selected vsRNAs as quantified using TaqMan probes. Both lethal PSTVd variants block biosynthesis of lignin in roots of cultured chamomile and tomato. Four 'expression markers' (TCP3, CIPK, VSF-1, and VPE) were selected from a tomato EST library to quantify their expression upon viroid infection; these markers were strongly downregulated in tomato leaf blades infected by PSTVd-C3- and -AS1 but not by PSTVd-QFA.     

基于转录组学和代谢组学联合分析草珊瑚萜类化合物生物合成的组织特异性分布

本研究旨在探究草珊瑚叶和根中萜类化合物的组织特异性分布差异,解析其药效品质差异形成的分子机制。采用液相色谱-质谱联用技术(liquid chromatography-mass spectrometry, LC-MS)和Illumina HiSeq^TM高通量测序技术获得草珊瑚[Sarcandra glabra (thunb) naka]叶和根的代谢组学和转录组学数据。代谢组学结果表明参与叶和根中萜类合成的差异代谢物有50个,包括法尼西基半胱氨酸、甘油醛-3-磷酸、甲羟戊酸-5-磷酸等。转录学结果表明差异代谢酶基因有57条,包括ACTC、HMGCR、MVK、DXS与KS等,并预测了MYB、C2H2、AP2/ERF-ERF等7个转录因子参与调控草珊瑚不同组织部位中萜类的合成和积累差异。实时荧光定量PCR (quantitative real-time polymerase chain reaction, qRT-PCR)结果显示,随机选取的8个参与萜类合成的酶基因在草珊瑚不同组织部位中的表达趋势与转录组学测序结果一致。本研究有助于阐明草珊瑚叶和根临床疗效差异形成的分子机制,同时为草珊瑚的资源开发利用奠定基础。     

Development of functional modules based on co-expression patterns for cell-wall biosynthesis related genes in rice

The functional elucidation of plant cell wall biosynthesis (CWB) related genes is important for understanding various stress tolerance responses as well as enhancing biomass in plants. Despite their significant role in physiology and growth of the plant, the function of a limited number of CWB related genes have been identified. Major obstacles such as functional redundancy and limited functional information pose challenges in the characterization of CWB genes. Here, a genome-wide analysis of CWB genes using meta-expression data revealed their roles in stress tolerance and developmental processes. The identification of coexpressed CWB genes suggests functional modules for plant cell wall biosynthesis associated with specific tissue types, biotic stress, abiotic stress, and hormone responses. More interestingly, we identified that glycosyl hydrolases are specialized for root and pollen development, glycosyltransferases for ubiquitous function and leaf development, and carbohydrate esterases for pollen development. A T-DNA insertional mutant of OsCESA9 showing internode preferred expression revealed severe dwarfism and a co-expression network analysis of OsCESA9 in oscesa9 mutant suggest downstream pathways for secondary cell wall biosynthesis and DNA repair processes. Data from our studies will facilitate functional genomic studies of CWB genes in rice and contribute to the enhancement of biomass and yield in crop plants.     

Spiroethers of German chamomile inhibit production of aflatoxin G and trichothecene mycotoxin by inhibiting cytochrome P450 monooxygenases involved in their biosynthesis.

The essential oil of German chamomile showed specific inhibition toward aflatoxin G(1) (AFG(1)) production, and (E)- and (Z)-spiroethers were isolated as the active compounds from the oil. The (E)- and (Z)-spiroethers inhibited AFG(1) production of Aspergillus parasiticus with inhibitory concentration 50% (IC(50)) values of 2.8 and 20.8 microM, respectively, without inhibiting fungal growth. Results of an O-methylsterigmatocystin (OMST) conversion study indicated that the spiroethers specifically inhibited the OMST to AFG(1) pathway. A cytochrome P450 monooxygenase, CYPA, is known as an essential enzyme for this pathway. Because CYPA has homology with TRI4, a key enzyme catalyzing early steps in the biosynthesis of trichothecenes, the inhibitory actions of the two spiroethers against TRI4 reactions and 3-acetyldeoxynivalenol (3-ADON) production were tested. (E)- and (Z)-spiroethers inhibited the enzymatic activity of TRI4 dose-dependently and interfered with 3-ADON production by Fusarium graminearum, with IC(50) values of 27.1 and 103 microM, respectively. Our results suggest that the spiroethers inhibited AFG(1) and 3-ADON production by inhibiting CYPA and TRI4, respectively.     

LncRNAs related key pathways and genes in ischemic stroke by weighted gene co-expression network analysis (WGCNA)

BackgroundIschemic stroke (IS) was a significant public health concern and long-chain noncoding RNAs (lncRNAs) were gaining particular importance in stroke biology, however, the potential mechanism of lncRNAs in IS was not fully understood.MethodsIn this study, three diagnosed patients with IS and three controls were selected to establish the lncRNA library. Weighted gene co-expression network analysis (WGCNA) was applied to screen key lncRNA modules associated with IS. The key lncRNAs were identified by module membership (MM) and gene significance (GS). The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis was used to identify the key pathways and protein-protein interaction (PPI) network method was used to identify the key genes.ResultsA total of 3627 lncRNAs were investigated, followed by an analysis of 17 modules, and only one module was highly associated with the IS. The top 10 lncRNAs were identified based on GS and MM. KEGG pathways analysis revealed the top two pathways of the Human T cell Lymphotropic Virus-1 (HTLV-1) infection and the mTOR signaling pathway might influence the progress of IS. Further, genes meeting the top two degree (AKT1 and MAPK14) were selected as the hub genes in the PPI network.ConclusionTo summarize, this study identified the key pathways and genes, which might serve as biomarkers and targets for precise diagnosis and treatment of IS in the future.     

GC-MS and 13C-NMR studies on the biosynthesis of terpenoid defensive secretions by the larvae of papilionid butterflies (Luehdorfia and Papilio)

The biosynthetic pathway of some terpenic hydrocarbons present in the larval osmeterial secretions of Luehdorfia (homogeneous type) and Papilio (heterogeneous type) species was examined by in vivo experiments, using ¹³C-labelled acetic acid which was topically applied to the everted osmeteria. GC-MS investigation demonstrated that ¹³C was incorporated into mono- and/or sesquiterpene hydrocarbons with the enrichment factor of approx. 0.5% (L. puziloi), 1.0% (P. protenor) and 2.9% (P. helenus) by treatment with 1,2-¹³C-enriched acetic acid, thereby substantiating de novo biosynthesis of terpenes from acetate precursors by these larvae. The incorporation pattern of [2-¹³C]- or [1,2-¹³C]acetic acid into the carbon framework of β-myrcene (L. puziloi) and (E)-β-farnesene (P. helenus) as revealed by ¹³C-NMR spectroscopy definitely elucidated the biosyntheses of terpenic compounds in both species by the familiar terpenoid synthetic system with the isoprenoid skeletal units that is widely known in plants. Partial correction of previous assignment of ¹³C-NMR spectra of β-myrcene and (E)-β-farnesene is also made.     

Spiroethers of German chamomile inhibit production of aflatoxin G1 and trichothecene mycotoxin by inhibiting cytochrome P450 monooxygenases involved in their biosynthesis

The essential oil of German chamomile showed specific inhibition toward aflatoxin G₁ (AFG₁) production, and ( E )- and ( Z )-spiroethers were isolated as the active compounds from the oil. The ( E )- and ( Z )-spiroethers inhibited AFG₁ production of Aspergillus parasiticus with inhibitory concentration 50% (IC₅₀) values of 2.8 and 20.8 μM, respectively, without inhibiting fungal growth. Results of an O- methylsterigmatocystin (OMST) conversion study indicated that the spiroethers specifically inhibited the OMST to AFG₁ pathway. A cytochrome P450 monooxygenase, CYPA, is known as an essential enzyme for this pathway. Because CYPA has homology with TRI4, a key enzyme catalyzing early steps in the biosynthesis of trichothecenes, the inhibitory actions of the two spiroethers against TRI4 reactions and 3-acetyldeoxynivalenol (3-ADON) production were tested. ( E ) - and ( Z ) - spiroethers inhibited the enzymatic activity of TRI4 dose-dependently and interfered with 3-ADON production by Fusarium graminearum , with IC₅₀ values of 27.1 and 103 μM, respectively. Our results suggest that the spiroethers inhibited AFG₁ and 3-ADON production by inhibiting CYPA and TRI4, respectively.     

埃及伊蚊不同组织的基因共表达模式分析

【目的】利用权重基因共表达网络分析(weighted gene co-expression network analysis,WGCNA)探索埃及伊蚊Aedes aegypti不同组织基因共表达模式。【方法】从NCBI SRA数据库中选择埃及伊蚊不同组织的转录组数据中具代表性的9种组织(雌雄成蚊的触角和脑,雌蚊的喙、下颚须和卵巢,雄成蚊的前足、中足、后足和腹部末端)的双端测序数据;经过缺失值移除以及方差计算后,筛选出方差最大的5 000个基因,利用R软件中WGCNA包建立埃及伊蚊成蚊不同组织的基因共表达网络并划分模块;然后利用clusterProfiler包对组织特异性模块内的基因进行GO(Gene Ontology)和KEGG(Kyoto Encyclopediaof Genes and Genomes)富集分析,并用Cytoscape软件中的CytoHubba插件筛选共表达模块内的hub基因。【结果】从埃及伊蚊成蚊不同组织中共鉴定出11个基因共表达模块,在雌蚊触角、喙、卵巢、下颚须以及雄蚊脑、腹部末端组织中各鉴定出1个特异性表达模块,雄蚊前足、中足和后足组织中无特异性表达模块。6个组织特异性表达模块内基因功能注释到组织生物学功能;其中,雌蚊触角特异性green模块内基因具有气味结合和嗅觉受体活性等功能;雌蚊喙特异性purple模块内基因具有丝氨酸型肽链内切酶活性和丝氨酸水解酶活性等功能;雄蚊脑特异性blue模块内基因在生物学过程调节、信号转导和神经系统过程等生物学过程中发挥主要作用。利用CytoHubba进一步鉴定出所选组织特异性共表达模块中具有高连通性的hub基因,包括AAEL010426, AAEL002896, AAEL002600, AAEL000961, AAEL007784和AAEL006429。【结论】本研究依据埃及伊蚊不同组织转录组数据,利用WGCNA方法发现了许多重要的基因共表达模块。本研究的结果为蚊虫基因共表达模式分析提供新思路和方法基础,对探究蚊虫不同组织特有的基因资源信息以及功能基因生物信息学研究有参考价值。