Whole genome sequence of Auricularia heimuer (Basidiomycota,Fungi), the third most important cultivated mushroom worldwide

Heimuer, Auricularia heimuer, is one of the most famous traditional Chinese foods and medicines, and it is the third most important cultivated mushroom worldwide. The aim of this study is to develop genomic resources for A. heimuer to furnish tools that can be used to study its secondary metabolite production capability, wood degradation ability and biosynthesis of polysaccharides. The genome was obtained from single spore mycelia of the strain Dai 13782 by using combined high-throughput Illumina HiSeq 4000 system with the PacBio RSII long-read sequencing platform. Functional annotation was accomplished by blasting protein sequences with different public available databases to obtain their corresponding annotations. It is 49.76 Mb in size with a N50 scaffold size of 1,350,668 bp and encodes 16,244 putative predicted genes. This is the first genome-scale assembly and annotation for A. heimuer, which is the third sequenced species in Auricularia.     

Whole genome sequencing and genome annotation of the wild edible mushroom,Russula griseocarnosa

Russula griseocarnosa is a species of edible ectomycorrhizal fungi with medicinal properties that grows in southern China. Total DNA was isolated from a fresh fruiting body of R. griseocarnosa and subjected to sequencing using Illumina Hiseq with the PacBio RS sequencing platform. Here, we present the 64.81 Mb draft genome map of R. griseocarnosa based on 471 scaffolds and 16,128 coding protein genes. The gene annotation of protein coding genes was used to obtain corresponding annotations by blastp. Phylogenetic analysis revealed a close evolutionary relationship of R. griseocarnosa to Heterobasidion irregulare and Stereum hirsutum in the core Russulales clade. The R. griseocarnosa genome encodes a repertoire of enzymes engaged in carbohydrate and polysaccharide metabolism, along with cytochrome P450s and secondary metabolite biosynthesis. The genome content of R. griseocarnosa provides insights into the genetic basis of its reported medicinal properties and serves as a reference for comparative genomics of fungi.     

Agaricus subrufescens, a cultivated edible and medicinal mushroom, and its synonyms

Agaricus subrufescens Peck was cultivated first in the late 1800s in eastern North America. The type consists partly of cultivated material and partly of field-collected specimens. Once a popular market mushroom, the species faded from commerce in the early 20th century. More recently, a mushroom species growing wild in Brazil has been introduced into cultivation in Brazil, Japan and elsewhere. This Brazilian mushroom has been referred to by various names, most commonly as A. blazei Murrill (sensu Heinemann) and most recently as A. brasiliensis Wasser et al. The author first cultivated A. subrufescens in 1981 and has grown and studied Brazilian isolates since 1992. The species has an amphithallic pattern of reproduction. Based on DNA sequence analysis of the rDNA ITS region and on mating studies and genetic analysis of hybrid progeny, there is a strong case for conspecificity of the Brazilian mushrooms with A. subrufescens. Based on a study of the type and other data, the recent lectotypification of A. subrufescens is accepted. Data are presented on mushrooms of diverse geographical origins, including A. rufotegulis Nauta from western Europe, another apparent conspecific. A possible role for interpopulational hybridization in current populations of A. subrufescens is proposed. The agronomic history of the species is reviewed.     

Phylogeny and character evolution in the jelly fungi (Tremellomycetes, Basidiomycota, Fungi)

The Tremellomycetes (Agaricomycotina, Basidiomycota, Fungi) are a nutritionally heterogeneous group comprising saprotrophs, animal parasites, and fungicolous species (fungal-inhabiting, including lichen-inhabiting). The relationships of many species, particularly those with a lichenicolous habit, have never been investigated by molecular methods. We present a phylogeny of the Tremellomycetes based on three nuclear DNA ribosomal markers (nSSU, 5.8S and nLSU), representing all main taxonomic groups and life forms, including lichenicolous taxa. The Cystofilobasidiales, Filobasidiales, Holtermanniales, and Tremellales (including the Trichosporonales) are recovered as monophyletic, but this is not the case for the Tremellomycetes. We suggest, however, that the Cystofilobasidiales tentatively continue to be included in the Tremellomycetes. As currently circumscribed, the Filobasidiaceae, Sirobasidiaceae, Syzygosporaceae and Tremellaceae are non-monophyletic. Cuniculitremaceae, Sirobasidiaceae and Tetragoniomycetaceae are nested within Tremellaceae. The lichenicolous species currently included within the Tremellomycetes belong in this group, distributed across the Filobasidiales and Tremellales. Lichen-inhabiting taxa do not form a monophyletic group; they are distributed in several clades and sometimes intermixed with taxa of other nutritional habits. Character state reconstruction indicates that two morphological traits claimed to characterize groups in the Tremellomycetes (the basidium habit and basidium septation) are highly homoplastic. Comparative phylogenetic methods suggest that the transitions between single and catenulate basidia in the Tremellales are consistent with a punctuational model of evolution whereas basidium septation is likely to have evolved under a graduational model in the clade comprising the Holtermanniales, Filobasidiales, and Tremellales.     

中国北方拟蜡伞属一个可食用的新种

拟蜡伞属Hygrophoropsis是牛肝菌目中的一个小属,现归属于独立的科——拟蜡伞科.本研究从形态学特征、分子生物学证据、生态学和地理分布等方面描述了一种可食用的新种——芦苇拟蜡伞.该新种的特征为菌盖表面乳白色至淡赭色;菌褶白到奶油色;担孢子长圆形至椭圆形,厚壁,具轻微糊精反应,大小为6-10×4-5.5 μm,生...     

中国革菌一新记录种

柔丝纹枯状革菌（Hypochnicium bombycinum）采于中国青海省,为中国革菌一新记录种。文中根据所采集的材料对其进行了详细的描述和显微结构绘图。     

Whole genome sequence of an unusual Borrelia burgdorferi sensu lato isolate

Human Lyme disease is caused by a number of related Borrelia burgdorferi sensu lato species. We report here the complete genome sequence of Borrelia sp. isolate SV1 from Finland. This isolate is to date the closest known relative of B. burgdorferi sensu stricto, but it is sufficiently genetically distinct from that species that it and its close relatives warrant its candidacy for new-species status. We suggest that this isolate should be named "Borrelia finlandensis."     

Sterols,aromatic compounds,and cerebrosides from the Hericium erinaceus fruiting body

Chemical investigation of the methanolic extract from the fruiting bodies of Hericium erinaceus, led to the isolation of fifty-one compounds including thirty-five ergostane-type sterols (1–35), fourteen aromatic compounds (36–49), and two cerebrosides (50 and 51). Their structures were identified based on spectroscopic analyses and by comparison of their spectral data with those reported in literature. This is the first comprehensive low-polarity chemical investigation of H. erinaceus. Thirty-one of the compounds (6–8, 11–35, 39, 41, and 49) were isolated for the first time from the genus Hericium and the family Hericiaceae. The chemotaxonomic relationship between H. erinaceus and other Hericium species was also discussed.     

Structural analysis of a water-soluble glucan (Fr.I) of an edible mushroom, Pleurotus sajor-caju

A water-soluble glucan was obtained from the fruit bodies of an edible mushroom, Pleurotus sajor-caju, by hot water extraction, ethanol precipitation, dialysis, and Sepharose 6B gel filtration. On the basis of total hydrolysis, methylation analysis, periodate oxidation, and NMR studies ((1)H, (13)C, DQF-COSY, TOCSY, NOESY, and HSQC), the structure of the repeating unit of the glucan is determined as [carbohydrate structure: see text].     

Hypolipidemic effect of an Exo-biopolymer produced from a submerged mycelial culture of Hericium erinaceus

The hypolipidemic effect of an exo-biopolymer produced from a submerged mycelial culture of Hericium erinaceus was investigated in dietary-induced hyperlipidemic rats. Hypolipidemic effects were proportionally increased with the increasing concentration of the exo-biopolymer for oral administration. The exo-biopolymer, at the dose of 200 mg/kg body weight, substantially reduced the plasma total cholesterol (32.9%), LDL cholesterol (45.4%), triglyceride (34.3%), phospholipid (18.9%), atherogenic index (58.7%), and hepatic HMG-CoA reductase activity (20.2%). It increased the plasma HDL cholesterol level (31.1%) as compared to the control group. The molecular mass of this exo-biopolymer measured by HPLC was under 40 kDa. Total sugar and protein contents were 91.2 and 8.8%, respectively. The sugar and amino acid compositions of the exo-biopolymer were analyzed in detail.     

Phylogenetic placement and anatomical characterisation of two new West African Tomentella (Basidiomycota, Fungi) species

Tomentella amyloapiculata and T. agbassaensis are described as new species within the genus Tomentella based on materials we collected in the West African, northern Guinean seasonal forests. We used a combination of anatomical characters, sequence analyses and phylogenetic inference of 71 ITS rDNA sequences to characterise the two new species. Anatomically, T. amyloapiculata is characterised by simple septate brown to dark brown, thick-walled subicular and subhymenial hyphae and triangular to slightly lobed brown basidiospores (in frontal view), with isolate aculei of 1–2 μm. Phylogenetically, T. amyloapiculata forms a sister species of T. fuscocinerea with a moderate bootstrap support of 70%. T. amyloapiculata deviates from T. fuscocinerea by 10.07–11.73% in their sequence similarities. As far as T. agbassaensis is concerned, it clusters phylogenetically together with T. bryophila with a strong bootstrap support of 99%. The species is characterised by slightly differentiated rhizomorphs with yellowish hyphae, clamped, thick-walled and yellow to dark yellow subicular hyphae and pale yellow, small basidiospores of 6–8(8.5) μm with aculei of up to 0.5 μm. Both new species deviated from each other by 11.0–11.60% with regard to the ITS rDNA nucleotides.     

Comparative study of mycelial growth and basidiomata formation in seven different species of the edible mushroom genus Hericium

The potential of using several agricultural by-products as supplements of sawdust substrate for the production of edible mushroom Hericium was evaluated using seven Hericium species. All the tested supplements (rice bran, wheat bran, barley bran, Chinese cabbage, egg shell, and soybean powder) were found to be suitable for the mycelial growth of all the tested species. In mycelial growth, soybean powder was the best supplement for Hericium americanum, Hericium coralloides, and Hericium erinaceum while barley bran was the best for Hericium alpestre, Hericium laciniatum, and Hericium erinaceus. For Hericium abietis, rice bran and Chinese cabbage was the best. The possibility of mushroom production on oak sawdust substrate with 20% rice bran supplement was demonstrated with H. coralloides, H. americanum, H. erinaceus, and H. erinaceum which showed 26-70% biological efficiency. Our results also showed that strain selection is important to improve biological efficiency and mushroom yield in Hericium cultivation.     

猴头多糖分离纯化的初步研究

目的：确定适合于猴头多糖分离纯化的方法。方法：以液体发酵生产的猴头菌丝为材料,提取猴头菌丝多糖进行分离纯化,以得到多糖纯品。结果：猴头菌丝粗多糖采用Sevag法除蛋白的次数应该控制在5-8次,而且Sevag法除蛋白所得的HMP,经DEAE-纤维素柱层析初步纯化,多糖主要分布在蒸馏水洗脱部分,命名为HMPⅠ,其含量为67.5%;HMPⅠ经Sephadex G-100凝胶柱层析纯化,得到两个组分：HMPⅠa、HMPⅠb;HMPⅠa为多糖主要组分,含量为71.8%;HMPⅠa经纯度鉴定为多糖纯品。结论：DEAE-纤维素柱层析结合Sephadex G-100凝胶柱层析的纯化方法,可以获得猴头多糖纯品。     

Whole genome sequence resource of Indian Zaprionus indianus

This article documents the whole genome sequence information of the Indian Zaprionus indianus, a member of the fruit fly family Drosophilidae. The sequences were generated on an Illumina platform and reads and whole genome sequence submitted to NCBI to the SRA and BioProject databases, respectively. This is the first Indian Z. indianus whole genome (draft) submitted to the sequence repository with SRA reads. The details of methodology, assembly statistics and functional annotation are presented in this work.