Fluorescence Changes During Chlorophyll Formation in Euglena gracilis (and Other Organisms) and an Estimate of Lamellar Area as a Function of Age

SYNOPSIS. In the present study, we show for various photosynthetic organisms in the mature state the diversity which exists in the relative fluorescence intensities of the aggregate and monomer of chlorophyll (at both room temperature and the temperature of liquid nitrogen). For a number of forms, but especially for Euglena gracilis , the spectral transformations which accompany greening are reported. The onset of photosynthetic activity is correlated with a steep (almost step-like) rise in the ratio of aggregate to monomer fluorescence. From this ratio we calculate the effective concentration of chlorophyll and estimate lamellar area as a function of greening.     

Greening of Peas: Parallel Measurements of 77 K Emission Spectra,OJIP Chlorophyll a Fluorescence Transient,Period Four Oscillation of the Initial Fluorescence Level,Delayed Light Emission,and P700

Irradiation of etiolated leaves leads to their greening. Although this problem has a long history, the question of whether the intermittent irradiation (IMI) grown plants have fully functional reaction centres as well as the oxygen clock, before exposure to continuous irradiation (CI), had not been resolved. To answer this question, as well as to analyze the development of the two photosystems, the following parallel measurements were made: (1) Emission spectra at 77 K; (2) OJIP chlorophyll (Chl) a fluorescence transient; (3) period 4 oscillation in the flash number dependence of initial fluorescence F₀ (at 50 μs) and F_J (at 2 ms); and (4) P700. In the 1-ms-flash (FL) grown pea, that has a different biogenesis of the photosynthetic apparatus, delayed light emission (DLE) and Chl a fluorescence transient were measured in parallel. Quantitative analysis of Chl a fluorescence values provided the following conclusions: (1) IMI, not FL, plants have almost fully developed reaction centres and the oxygen clock. (2) Further greening of IMI plants under CI involves two phases: (a) during 3-4 h of CI, the number of PS2 units and connectivity between them increase, and then (b) light-harvesting antenna increases. (3) In FL, 10 min CI activates fully the oxygen clock. This revised version was published online in June 2006 with corrections to the Cover Date.     

The Supposed Role of Microbiological Aerosol Stabilizers as Substitutes for Bound Water: A Study of an In Vitro Model System

In order to test a suggestion that inositol may take the place of water in maintaining the stability of desiccated cells, the reversible endothermic association of tobacco mosaic virus protein (TMVP) was studied turbidimetrically in presence of this substance. Its effect was to lower the temperature at which association takes place, the positive standard enthalpy and standard entropy of reaction both being increased by about 30%. The hypothesis of direct substitution of bound water by inositol at the site of macromolecular association leads to the contrary prediction that the association temperature would be raised. It is suggested that the observed effect of inositol may result from a conformation change in TMVP brought about by binding of inositol at positions adjacent to the site of reaction.     

Ebola Virus Genome Plasticity as a Marker of Its Passaging History: A Comparison of In Vitro Passaging to Non-Human Primate Infection

To identify polymorphic sites that could be used as biomarkers of Ebola virus passage history, we repeatedly amplified Ebola virus (Kikwit variant) in vitro and in vivo and performed deep sequencing analysis of the complete genomes of the viral subpopulations. We then determined the sites undergoing selection during passage in Vero E6 cells. Four locations within the Ebola virus Kikwit genome were identified that together segregate cell culture-passaged virus and virus obtained from infected non-human primates. Three of the identified sites are located within the glycoprotein gene (GP) sequence: the poly-U (RNA editing) site at position 6925, as well as positions 6677, and 6179. One site was found in the VP24 gene at position 10833. In all cases, in vitro and in vivo, both populations (majority and minority variants) were maintained in the viral swarm, with rapid selections occurring after a few passages or infections. This analysis approach will be useful to differentiate whether filovirus stocks with unknown history have been passaged in cell culture and may support filovirus stock standardization for medical countermeasure development.     

Systems Approaches to Unravel Molecular Function: High-content siRNA Screen Identifies TMEM16A Traffic Regulators as Potential Drug Targets for Cystic Fibrosis

An attractive approach to treat people with Cystic Fibrosis (CF), a life-shortening disease caused by mutant CFTR, is to compensate for the absence of this chloride/bicarbonate channel by activating alternative (non-CFTR) chloride channels. One obvious target for such “mutation-agnostic” therapeutic approach is TMEM16A (anoctamin-1/ANO1), a calcium-activated chloride channel (CaCC) which is also expressed in the airways of people with CF, albeit at low levels. To find novel TMEM16A regulators of both traffic and function, with the main goal of identifying candidate CF drug targets, we performed a fluorescence cell-based high-throughput siRNA microscopy screen for TMEM16A trafficking using a double-tagged construct expressed in human airway cells. About 700 genes were screened (2 siRNAs per gene) of which 262 were identified as candidate TMEM16A modulators (179 siRNAs enhanced and 83 decreased TMEM16A traffic), being G-protein coupled receptors (GPCRs) enriched on the primary hit list. Among the 179 TMEM16A traffic enhancer siRNAs subjected to secondary screening 20 were functionally validated. Further hit validation revealed that siRNAs targeting two GPCRs – ADRA2C and CXCR3 – increased TMEM16A-mediated chloride secretion in human airway cells, while their overexpression strongly diminished calcium-activated chloride currents in the same cell model. The knockdown, and likely also the inhibition, of these two TMEM16A modulators is therefore an attractive potential therapeutic strategy to increase chloride secretion in CF.     

Improved Methodology for Sensitive and Rapid Quantitative Proteomic Analysis of Adult‐Derived Mouse Microglia: Application to a Novel In Vitro Mouse Microglial Cell Model

Microglia, as the resident brain immune cells, can exhibit a broad range of activation phenotypes, which have been implicated in a multitude of central nervous system disorders. Current widely studied microglial cell lines are mainly derived from neonatal rodent brain that can limit their relevance to homeostatic function and disease‐related neuroimmune responses in the adult brain. Recently, an adult mouse brain‐derived microglial cell line has been established; however, a comprehensive proteome dataset remains lacking. Here, an optimization method for sensitive and rapid quantitative proteomic analysis of microglia is described that involves suspension trapping (S‐Trap) for efficient and reproducible protein extraction from a limited number of microglial cells expected from an adult mouse brain (≈300 000). Using a 2‐h gradient on a 75‐cm UPLC column with a modified data dependent acquisition method on a hybrid quadrupole‐Orbitrap mass spectrometer, 4855 total proteins have been identified where 4698 of which are quantifiable by label‐free quantitation with a median and average coefficient of variation (CV) of 6.7% and 10.6%, respectively. This dataset highlights the high depth of proteome coverage and related quantitation precision of the adult‐derived microglial proteome including proteins associated with several key pathways related to immune response. Data are available via ProteomeXchange with identifier PXD012006.     

HepG2细胞在模拟微重力条件下的生长研究——体外细胞三维生长模型构建

将人肝癌细胞(HepG2)接种于生物可降解支架聚羟基乙酸(polyglycolicacid,PGA)上,采用模拟微重力方法,在具有低剪应力和适宜气体扩散的旋转细胞培养系统(RCCS)中培养,构建体外三维培养模型.通过扫描电镜、透射电镜、RT-PCR、流式细胞术等方法观察分析.结果表明,细胞在此模型中生长良好,细胞呈多面体,含有丰富的微绒毛、线粒体以及胞间有紧密连接形成.该系统有利于细胞形成三维结构,更接近于体内细胞实际生长状况.另外,通过黏附分子表达分析,表明该模型重现了肝癌细胞某些体内侵袭转移特征.一些在肿瘤细胞侵袭和转移过程中具有重要作用的细胞黏附分子(celladhesionmolecules,CAMs)表达有了显著的变化,其中E-钙粘素(E-cadherin)表达降低,CD44、细胞间黏附分子-1(intercellularadhesionmolecule-1,ICAM-1,CD54)以及整合素β1(integrinβ1,CD29)表达增高.在体外实验中,对实验模型的适当选择是得到理想客观实验结果的必要前提,采用模拟微重力的方法构建的体外细胞三维培养模型,将为肿瘤生物学研究、药物敏感性试验等提供更为理想的研究模型.     

Methodology Using a Portable X-Ray Fluorescence Device for On-Site and Rapid Evaluation of Heavy-Atom Contamination in Wounds: A Model Study for Application to Plutonium Contamination

Workers decommissioning the Fukushima-Daiichi nuclear power plant damaged from the Great East Japan Earthquake and resulting tsunami are at risk of injury with possible contamination from radioactive heavy atoms including actinides, such as plutonium. We propose a new methodology for on-site and rapid evaluation of heavy-atom contamination in wounds using a portable X-ray fluorescence (XRF) device. In the present study, stable lead was used as the model contaminant substitute for radioactive heavy atoms. First, the wound model was developed by placing a liquid blood phantom on an epoxy resin wound phantom contaminated with lead. Next, the correlation between the concentration of contaminant and the XRF peak intensity was formulated considering the thickness of blood exiting the wound. Methods to determine the minimum detection limit (MDL) of contaminants at any maximal equivalent dose to the wound by XRF measurement were also established. For example, in this system, at a maximal equivalent dose of 16.5 mSv to the wound and blood thickness of 0.5 mm, the MDL value for lead was 1.2 ppm (3.1 nmol). The radioactivity of ²³⁹Pu corresponding to 3.1 nmol is 1.7 kBq, which is lower than the radioactivity of ²³⁹Pu contaminating puncture wounds in previous severe accidents. In conclusion, the established methodology could be beneficial for future development of a method to evaluate plutonium contamination in wounds. Highlights: Methodology for evaluation of heavy-atom contamination in a wound was established. A portable X-ray fluorescence device enables on-site, rapid and direct evaluation. This method is expected to be used for evaluation of plutonium contamination in wounds.     

A Model of Functional Brain Connectivity and Background Noise as a Biomarker for Cognitive Phenotypes: Application to Autism

We present an efficient approach to discriminate between typical and atypical brains from macroscopic neural dynamics recorded as magnetoencephalograms (MEG). Our approach is based on the fact that spontaneous brain activity can be accurately described with stochastic dynamics, as a multivariate Ornstein-Uhlenbeck process (mOUP). By fitting the data to a mOUP we obtain: 1) the functional connectivity matrix, corresponding to the drift operator, and 2) the traces of background stochastic activity (noise) driving the brain. We applied this method to investigate functional connectivity and background noise in juvenile patients (n = 9) with Asperger’s syndrome, a form of autism spectrum disorder (ASD), and compared them to age-matched juvenile control subjects (n = 10). Our analysis reveals significant alterations in both functional brain connectivity and background noise in ASD patients. The dominant connectivity change in ASD relative to control shows enhanced functional excitation from occipital to frontal areas along a parasagittal axis. Background noise in ASD patients is spatially correlated over wide areas, as opposed to control, where areas driven by correlated noise form smaller patches. An analysis of the spatial complexity reveals that it is significantly lower in ASD subjects. Although the detailed physiological mechanisms underlying these alterations cannot be determined from macroscopic brain recordings, we speculate that enhanced occipital-frontal excitation may result from changes in white matter density in ASD, as suggested in previous studies. We also venture that long-range spatial correlations in the background noise may result from less specificity (or more promiscuity) of thalamo-cortical projections. All the calculations involved in our analysis are highly efficient and outperform other algorithms to discriminate typical and atypical brains with a comparable level of accuracy. Altogether our results demonstrate a promising potential of our approach as an efficient biomarker for altered brain dynamics associated with a cognitive phenotype.