Modifications of traps to reduce bycatch of freshwater turtles

Mortality of freshwater turtles varies among types and deployments of traps. There are few or no losses in hoop or fyke traps set where turtles may reach air, including placement in shallows, addition of floats on traps, and tying traps securely to a stake or to shore. Turtle mortality occurs when traps are set deep, traps are checked at intervals >1 day, and when turtles are captured as bycatch. Devices are available that exclude turtles from traps set for crab or game fish harvest. Slotted gates in front of the trap mouth reduce turtle entry, but small individuals still may be trapped. Incidental take of turtles is preventable by integrating several designs into aquatic traps, such as adding floats to the top of traps so turtles may reach air or an extension tube (chimney, ramp) that creates an escape route. © 2010 The Wildlife Society.     

Odontocete bycatch and depredation in longline fisheries: A review of available literature and of potential solutions

Operational interactions between odontocetes (i.e., toothed whales) and longline gear are a global phenomenon that may threaten the conservation of odontocete populations and the economic viability of longline fisheries. This review attempts to define the issue, summarize the trends and geographical extent of its occurrence over the last half century, explore the potential impact on odontocetes and on fisheries, and describe potential acoustic and physical mitigation solutions. Reports of odontocete bycatch rates are highly variable (between 0.002 and 0.231 individuals killed per set) and at least 20 species may be involved. Information about marine mammal population size, migration patterns and life history characteristics are scarce, although at least one population may be in decline due to losses attributable to longline bycatch. Information about the financial impact of depredation on pelagic longline fisheries is also scarce, although estimates of daily fleet‐wide losses range between US$1,034 and US$8,495 (overall fleet income was not reported). Such biological and financial losses may be unsustainable. Recent developments in acoustic and physical mitigation technologies have yielded mixed results. Acoustic mitigation technologies have no moving parts, although require complex electronics. To date, they are insufficiently developed and their efficacy has been difficult to assess. Physical mitigation technologies generally require complex moving parts, although they are relatively simple to develop and assess. Further development and testing remains necessary before widespread implementation would be possible. Development of these approaches should be prioritized and a “toolbox” of various strategies and solutions should be compiled, because a single panacea to the problem is unlikely to emerge.     

Subsurface behavior of bottlenose dolphins (Tursiops truncatus) interacting with fish trawl nets in northwestern Australia: Implications for bycatch mitigation

Most studies of delphinid‐trawler interactions have documented the surface behavior of dolphins feeding on discarded bycatch, but not their subsurface behavior around demersal trawl gear. Using video cameras mounted inside trawl nets, we recorded the subsurface behavior of common bottlenose dolphins (Tursiops truncatus) in a demersal fish trawl fishery in northwestern Australia. Footage from 36 trawls across the fishery was analyzed to determine the extent of dolphin‐gear interactions and the behavior of dolphins inside the nets. Interaction rates were high, with dolphins present inside and outside the nets during 29 and 34 trawls, respectively, and for up to 99% of the trawl duration. The proportion of foraging behaviors exhibited inside the nets was higher than the proportions of traveling and socializing behaviors. Twenty‐nine individuals were identified inside the net, seven of which returned repeatedly within and between trawls and fishing trips, but were observed primarily in the same localized areas in which they were first recorded. Our results suggest that entering trawl nets may be a frequently occurring, yet specialized behavior exhibited by a small subset of trawler‐associated dolphins. We propose that gear modifications, not spatial or temporal adjustments to fishing effort, have the greatest potential to reduce dolphin bycatch.     

Molecularly imprinted polymers—A closer look at the control polymer used in determining the imprinting effect: A mini review

Molecular recognition displayed by naturally occurring receptors has continued to inspire new innovations aimed at developing systems that can mimic this natural phenomenon. Since 1930s, a technology called molecular imprinting for producing biomimetic receptors has been in place. In this technology, tailor made binding sites that selectively bind a given target analyte (also called template) are incorporated in a polymer matrix by polymerizing functional monomers and cross‐linking monomers around a target analyte followed by removal of the analyte to leave behind cavities specific to the analyte. The success of the imprinting process is defined by two main figures of merit, that is, the imprinting factor, and selectivity, which are determined by comparing the amount of target analyte or structural analogue bound by the molecularly imprinted polymer (MIP) and the nonimprinted polymer (NIP). NIP is a control synthesized alongside the MIP but in the absence of the template. However, questions arise on whether these figures of merit are reliable measures of the imprinting effect because of the significant differences between the MIP and the NIP in terms of their physical and chemical characteristics. Therefore, this review critically looks into this subject, with a view of defining the best approaches for determining the imprinting effect.     

Optimization assisted framework for thyroid detection and classification: A new ensemble technique

Ultrasound (US) is an inexpensive and non-invasive technique for capturing the image of the thyroid gland and nearby tissue. The classification and detection of thyroid disorders is still in its infant stage. This study aims to present a new thyroid diagnosis approach, which consists of three phases like “(i) feature extraction, (ii) feature dimensionality reduction, and (iii) classification”. Initially, the thyroid images as well as its related data are given as input. From the input image, the features such as“ Grey Level Co-occurrence Matrix(GLCM), Grey level Run Length Matrix(GLRM), proposed Local Binary Pattern(LBP), and Local Tetra Patterns (LTrP)” are extracted. Meanwhile, from the input data, the higher-order statistical features like skewness, kurtosis, entropy, as well as moment get retrieved. Consequently, the Linear Discriminant Analysis (LDA) based dimensionality reduction is processed to resolve the problem of “curse of dimensionality”. Finally, the classification is carried out via two phases: Image features are classified using an ensemble classifier that includes Support Vector Machine (SVM)& Neural Network(NN) models. The data features are subjected to Recurrent Neural Network(RNN) based classification, which is optimized by an Adaptive Elephant Herding Algorithm (AEHO) via tuning the optimal weight. At last, the performance of the adopted scheme is compared to the extant models in terms of various measures. Especially, the mean value of the suggested RNN + AEHO model is 4.35%, 3.54%, 6.07%, 3.8%, 1.69%, 2.85%, 2.07%, 2.54%, 0.13%, 0.035%, and 8.53% better than the existing CNN, NB, RF, KNN, Levenberg, RNN + EHO, RNN + FF, RNN + WOA, WF-CS, FU-SLnO and HFBO methods respectively.     

Patient-level interventions to reduce alcohol-related harms in low- and middle-income countries: A systematic review and meta-summary

BackgroundDisease and disability from alcohol use disproportionately impact people in low- and middle-income countries (LMICs). While varied interventions have been shown to reduce alcohol use in high-income countries, their efficacy in LMICs has not been assessed. This systematic review describes current published literature on patient-level alcohol interventions in LMICs and specifically describes clinical trials evaluating interventions to reduce alcohol use in LMICs.Methods and findingsIn accordance with PRISMA, we performed a systematic review using an electronic search strategy from January 1, 1995 to December 1, 2020. Title, abstract, as well as full-text screening and extraction were performed in duplicate. A meta-summary was performed on randomized controlled trials (RCTs) that evaluated alcohol-related outcomes. We searched the following electronic databases: PubMed, EMBASE, Scopus, Web of Science, Cochrane, WHO Global Health Library, and PsycINFO. Articles that evaluated patient-level interventions targeting alcohol use and alcohol-related harm in LMICs were eligible for inclusion. No studies were excluded based on language.After screening 5,036 articles, 117 articles fit our inclusion criteria, 75 of which were RCTs. Of these RCTs, 93% were performed in 13 middle-income countries, while 7% were from 2 low-income countries. These RCTs evaluated brief interventions (24, defined as any intervention ranging from advice to counseling, lasting less than 1 hour per session up to 4 sessions), psychotherapy or counseling (15, defined as an interaction with a counselor longer than a brief intervention or that included a psychotherapeutic component), health promotion and education (20, defined as an intervention encouraged individuals’ agency of taking care of their health), or biologic treatments (19, defined as interventions where the biological function of alcohol use disorder (AUD) as the main nexus of intervention) with 3 mixing categories of intervention types. Due to high heterogeneity of intervention types, outcome measures, and follow-up times, we did not conduct meta-analysis to compare and contrast studies, but created a meta-summary of all 75 RCT studies. The most commonly evaluated intervention with the most consistent positive effect was a brief intervention; similarly, motivational interviewing (MI) techniques were most commonly utilized among the diverse array of interventions evaluated.ConclusionsOur review demonstrated numerous patient-level interventions that have the potential to be effective in LMICs, but further research to standardize interventions, populations, and outcome measures is necessary to accurately assess their effectiveness. Brief interventions and MI techniques were the most commonly evaluated and had the most consistent positive effect on alcohol-related outcomes.Trial registrationProtocol Registry: PROSPERO CRD42017055549

Catherine Staton and co-workers report on evidence about interventions against harmful alcohol use in low- and middle-income countries.     

Selecting biological indicators for monitoring soils: A framework for balancing scientific and technical opinion to assist policy development

Soils are one of the most important features of the natural capital of terrestrial ecosystems. There is a strong and increasing policy requirement for effective monitoring of soils at local, regional and national-scales. However, it remains unclear which properties of soils are most appropriately monitored. This is partly due to the wide range of goods and services that soils provide, but also their inherent chemical, physical and biological complexity. Given that the biota plays such fundamental roles in the majority of ecosystem services provided by soils, biological properties are logical candidates as effective indicators, to complement soil physico-chemical properties. A plethora of biological methods have been suggested as indicators for monitoring soils but few are used in national-scale monitoring or are published as international standards. A framework for selecting ecologically relevant biological indicators of soil quality, for national-scale soil monitoring, that cover the range of functions and services of soil was devised. The literature was surveyed to identify 183 candidate biological indicators which were then scored by experts and stakeholders against a wide range of scientific and technical criteria. The framework used the scores and weightings to then rank, prioritise and select the indicators. This semi-objective approach using a “logical sieve” allowed repeated iterations to take account of end-user requirements and expert opinion. A ranked list of 21 indicators was produced that covered a range of genotypic-, phenotypic- and functional-based indicators for different trophic groups. Four of these were not deemed sufficiently robust for ready deployment in a national-scale monitoring scheme without further methodological development. The suite of indicators identified offers the strongest potential candidates for deployment in national-scale soil monitoring schemes. However, standard operating procedures, their inherent sensitivity, ability to discriminate between soil:land use combinations, ecological interpretation all need to be confirmed. The power of the approach adopted here is that it provides a clear record and audit trail on the decision-making process, enables different priorities to be set contingent on the nature of the desired monitoring, and can direct and allow the inclusion of further methods or indicators into the framework.     

Enhancing Protein A performance in mAb processing: A method to reduce and rapidly evaluate host cell DNA levels during primary clarification

The use and impact of 3M™ Emphaze™ AEX Hybrid Purifier, a single-use, fully synthetic chromatographic product, was explored to reduce host cell DNA (HC-DNA) concentration during the primary clarification of a monoclonal antibody (mAb). An approximately 5-log reduction in HC-DNA was achieved at an Emphaze AEX Hybrid Purifier throughput of 200 L/m². The appreciable reduction in HC-DNA achieved during primary clarification enhanced Protein A chromatography performance, resulting in a sharper and narrower elution profile. In addition, a 24× improvement in host cell protein (HCP) removal and fewer impurities nonspecifically bound to the Protein A column were observed compared to those resulting from the use of depth filtration for clarification. The use of a rapid, qualitative acidification assay to facilitate HC-DNA monitoring was also investigated. This assay involves the acidification-induced precipitation of HC-DNA, enabling the easy and rapid detection of DNA breakthrough across purification media such as Emphaze AEX Hybrid Purifier by means of turbidimetric and particle size measurements.     

Consequences of impediments to animal movements at different scales: A conceptual framework and review

Aim

The persistence of animal populations depends on individuals moving successfully around a landscape, but habitat fragmentation can hinder this by reducing functional connectivity. The proximate cause of population declines in fragmented habitat is dependent on the spatial and temporal scales of movement restrictions.

Location

Global.

Methods

We present a conceptual framework highlighting the relationship between spatial and temporal scales, and three mechanisms through which detrimental impacts can occur when movement is disrupted in fragmented landscapes: limited resource access, restricted demographic exchange and impeded gene flow. We then review the literature to identify the proportion of studies conducted on each mechanism and whether biases existed in how often each was studied among different geographic zones or taxa. A random selection of 250 articles was classified by the mechanism, geographic region and taxon studied in each article.

Results

Our conceptual framework highlighted that each of the three mechanisms tends to be characterized by movement restriction at progressively larger spatial and temporal scales. In our literature review, we found that the overwhelming majority (77%) of articles investigated impeded gene flow, and only 17% and 10% explored restricted demographic exchange and limited resource access, respectively. Work on limited resource access was disproportionately low for particular taxonomic groups, such as reptiles and amphibians.

Main conclusions

Distinguishing which mechanisms are disrupted in a particular system is crucial because addressing each is likely to require a distinct conservation management response. We encourage greater focus on the less‐studied mechanisms of restricted demographic exchange and limited resource access.     

Environment and development in Sikkim Himalaya: A review

This paper discusses the problems of environment and development in Sikkim Himalaya. Two features of Sikkim, the fragile mountain environment and the very rapidly growing population, are crucial in formulating future development plans. An integrated approach to development and environmental conservation is suggested.     

Data representativeness in LCA: A framework for the systematic assessment of data quality relative to technology characteristics

A shortcoming in current data quality assessment schemes is that the data quality information is not used systematically to identify the critical data in a life cycle inventory (LCI) model. In addition, existing criteria employed to evaluate representativeness lack relevance to the specific context of a study. A novel framework is proposed herein for the evaluation of the representativeness of LCI data, including an analysis of the importance of the data and a modification of quality criteria based on unit process characteristics. Temporal characteristics are analyzed by identifying the technology shift, because data generated before this time are considered outdated. Geographical and technological characteristics are analyzed by defining a “related area” and a “related technology,” which is done by identifying a number of relevant geographical and technical factors, and then comparing the collected data with these factors. The framework was illustrated in a case study on household waste incineration in Denmark. The results demonstrated the applicability of the method in practice, and they provided data quality criteria unique to waste incineration unit processes, for example, different time intervals to evaluate temporal representativeness. However, the proposed method is time demanding, and thus sector‐level characteristic analyses are feasible instead of the user having to do the analyses.     

A farewell to arms and legs: a review of limb reduction in squamates

Elongated snake-like bodies associated with limb reduction have evolved multiple times throughout vertebrate history. Limb-reduced squamates (lizards and snakes) account for the vast majority of these morphological transformations, and thus have great potential for revealing macroevolutionary transitions and modes of body-shape transformation. Here we present a comprehensive review on limb reduction, in which we examine and discuss research on these dramatic morphological transitions. Historically, there have been several approaches to the study of squamate limb reduction: (i) definitions of general anatomical principles of snake-like body shapes, expressed as varying relationships between body parts and morphometric measurements; (ii) framing of limb reduction from an evolutionary perspective using morphological comparisons; (iii) defining developmental mechanisms involved in the ontogeny of limb-reduced forms, and their genetic basis; (iv) reconstructions of the evolutionary history of limb-reduced lineages using phylogenetic comparative methods; (v) studies of functional and biomechanical aspects of limb-reduced body shapes; and (vi) studies of ecological and biogeographical correlates of limb reduction. For each of these approaches, we highlight their importance in advancing our understanding, as well as their weaknesses and limitations. Lastly, we provide suggestions to stimulate further studies, in which we underscore the necessity of widening the scope of analyses, and of bringing together different perspectives in order to understand better these morphological transitions and their evolution. In particular, we emphasise the importance of investigating and comparing the internal morphology of limb-reduced lizards in contrast to external morphology, which will be the first step in gaining a deeper insight into body-shape variation.     

Environmental drivers in mangrove establishment and early development: A review

Mangroves have a global distribution within coastal tropical and subtropical climates, and have even expanded to some temperate locales. Where they do occur, mangroves provide a plethora of goods and services, ranging from coastal protection from storms and erosion to direct income for human societies. The mangrove literature has become rather voluminous, prompting many subdisciplines within a field that earlier in the 20th century received little focus. Much of this research has become diffuse by sheer numbers, requiring detailed syntheses to make research results widely available to resource managers. In this review, we take an inclusive approach in focusing on eco-physiological and growth constraints to the establishment and early development of mangrove seedlings in the intertidal zone. This is a critical life stage for mangroves, i.e., the period between dispersal and recruitment to the sapling stage. We begin with some of the research that has set the precedent for seedling-level eco-physiological research in mangroves, and then we focus on recent advances (circa. 1995 to present) in our understanding of temperature, carbon dioxide, salinity, light, nutrient, flooding, and specific biotic influences on seedling survival and growth. As such, we take a new approach in describing seedling response to global factors (e.g., temperature) along with site-specific factors (e.g., salinity). All variables will strongly influence the future of seedling dynamics in ways perhaps not yet documented in mature forests. Furthermore, understanding how different mangrove species can respond to global factors and regional influences is useful for diagnosing observed mortality within mangrove wetlands, managed or natural. This review provides an updated eco-physiological knowledge base for future research and reforestation activity, and for understanding important links among climate change, local physico-chemical condition, and establishment and early growth of mangrove seedlings.     

Application of pulsed light technology for fruits and vegetables disinfection: A review

Non-thermal technologies can maintain fruit and vegetable products quality better than traditional thermal processing. Pulsed light (PL) is a non-thermal method for microbial inactivation (vegetative cells and spores) in fruits and vegetables. The PL treatment involves the application of intense and short-duration pulses of broad spectrum wavelengths ranging from UV to near-infrared (100–1100 nm). This review summarized application of PL technology to control microbial contamination and increasing shelf-life of some fruits and vegetables including apple, blueberries, grape, orange, strawberries, carrot, lettuce, spinach, and tomato. The microbial inactivation in very short treatment times, low energy used by this system, flexibility for solid or liquid samples, few residual compounds and no synthetic chemicals that cause environmental pollution or harm humans, is benefits of PL technique. The efficiency of PL disinfection is closely associated with the input voltage, fluence (energy dose), composition of the emitted light spectrum, number of lamps, the distance between samples and light source, and frequency and number of applied pulses. The PL treatments control pathogenic and spoilage microorganisms, so it facilitates the growth and development of the starter microorganisms affecting product quality.     

Process analytics 4.0: A paradigm shift in rapid analytics for biologics development

Analytical testing of product quality attributes and process parameters during the biologics development (Process analytics) has been challenging due to the rapid growth of biomolecules with complex modalities to support unmet therapeutic needs. Thus, the expansion of the process analytics tool box for rapid analytics with the deployment of cutting-edge technologies and cyber-physical systems is a necessity. We introduce the term, Process Analytics 4.0; which entails not only technology aspects such as process analytical technology (PAT), assay automation, and high-throughput analytics, but also cyber-physical systems that enable data management, visualization, augmented reality, and internet of things (IoT) infrastructure for real time analytics in process development environment. This review is exclusively focused on dissecting high-level features of PAT, automation, and data management with some insights into the business aspects of implementing during process analytical testing in biologics process development. Significant technological and business advantages can be gained with the implementation of digitalization, automation, and real time testing. A systematic development and employment of PAT in process development workflows enable real time analytics for better process understanding, agility, and sustainability. Robotics and liquid handling workstations allow rapid assay and sample preparation automation to facilitate high-throughput testing of attributes and molecular properties which are otherwise challenging to monitor with PAT tools due to technological and business constraints. Cyber-physical systems for data management, visualization, and repository must be established as part of Process Analytics 4.0 framework. Furthermore, we review some of the challenges in implementing these technologies based on our expertise in process analytics for biopharmaceutical drug substance development.     

Psychological interventions to reduce positive symptoms in schizophrenia: systematic review and network meta‐analysis

Psychological treatments are increasingly regarded as useful interventions for schizophrenia. However, a comprehensive evaluation of the available evidence is lacking and the benefit of psychological interventions for patients with current positive symptoms is still debated. The present study aimed to evaluate the efficacy, acceptability and tolerability of psychological treatments for positive symptoms of schizophrenia by applying a network meta‐analysis approach, that can integrate direct and indirect comparisons. We searched EMBASE, MEDLINE, PsycINFO, PubMed, BIOSIS, Cochrane Library, World Health Organization's International Clinical Trials Registry Platform and ClinicalTrials.gov for randomized controlled trials of psychological treatments for positive symptoms of schizophrenia, published up to January 10, 2018. We included studies on adults with a diagnosis of schizophrenia or a related disorder presenting positive symptoms. The primary outcome was change in positive symptoms measured with validated rating scales. We included 53 randomized controlled trials of seven psychological interventions, for a total of 4,068 participants receiving the psychological treatment as add‐on to antipsychotics. On average, patients were moderately ill at baseline. The network meta‐analysis showed that cognitive behavioural therapy (40 studies) reduced positive symptoms more than inactive control (standardized mean difference, SMD=?0.29; 95% CI: –0.55 to ?0.03), treatment as usual (SMD=?0.30; 95% CI: –0.45 to ?0.14) and supportive therapy (SMD=?0.47; 95% CI: –0.91 to ?0.03). Cognitive behavioural therapy was associated with a higher dropout rate compared with treatment as usual (risk ratio, RR=0.74; 95% CI: 0.58 to 0.95). Confidence in the estimates ranged from moderate to very low. The other treatments contributed to the network with a lower number of studies. Results were overall consistent in sensitivity analyses controlling for several factors, including the role of researchers’ allegiance and blinding of outcome assessor. Cognitive behavior therapy seems to be effective on positive symptoms in moderately ill patients with schizophrenia, with effect sizes in the lower to medium range, depending on the control condition.     

The costs of autotomy and regeneration in animals: a review and framework for future research

Many organisms have the ability to shed an appendage (autotomy)to escape a predator or fouled molting event. Despite its immediateadvantage on survivorship, autotomy can have important consequencesfor locomotion, foraging, survivorship, and/or reproduction.Thus, regeneration is a way that animals alleviate some of thecosts associated with losing an appendage. Like autotomy, however,appendage regeneration can have important consequences for avariety of aspects of fitness; in a wide range of amphibians,reptiles, fishes, and arthropods, the allocation of resourcesto regenerate a lost appendage negatively affects somatic orreproductive growth. Previous research into the costs associatedwith regeneration has provided a strong framework to explorehow trade-offs associated with regeneration may have influencedits evolution. However, all research to date describing thecosts and benefits associated with autotomy and regenerationhave compared individuals autotomizing and regenerating an appendagewith individuals that have never lost an appendage. I suggestthat for studies of the evolutionary significance of regeneration,an alternative comparison is between individuals experiencingautotomy without regeneration and individuals experiencing autotomywith regeneration. Future work in this direction promises newinsights into the evolution of regenerative tendencies, as wellas how regeneration may be influencing animal form and function.     

A Game of Cat and Fish: How to Restore the Balance in Sustainable Fisheries Management

This article argues that continued reliance on input/output controls and restrictions in fisheries management may be insufficient to protect global fish stocks. Instead, a transition beyond supply-side measures to those aimed at reducing demand for fish stocks may be necessary. The article offers a proposal for five types of demand-side or market-based measures: elimination of fishing subsidies, bolstering of import restrictions, ceasing trade in endangered and threatened fish stocks, strengthening civil and criminal penalties against illegal fishers, and pursuit of punitive trade sanctions against flag states flouting international fishery guidelines to help prevent and deter global overfishing.