New records of Gelidiella pannosa, Pterocladiella caerulescens and Pterocladiella caloglossoides (Rhodophyta, Gelidiales) from Japan

Three gelidialean species, Gelidiella pannosa (Feld‐mann) Feldmann et Hamel, Pterocladiella caerulescens (Kutzing) Santelices et Hommersand and Pterocladiella caloglossoides (Howe) Santelices, are newly reported from Japan, and their characteristic features are described. Monoecious plants of P. caerulescens produce spermatangial sori on: (i) fertile cystocarpic branchlets; (ii) special spermatangial branchlets on a cystocarpic axis; and (iii) branchlets of a special spermatangial axis. The latter two are newly reported in this species. Gelidiella pannosa has numerous unicellular independent points of attachment, whereas P. caerulescens and P. caloglossoides have the peg type of secondary rhizoidal anchorage. In the molecular phylogenetic study using small subunit ribosomal DNA sequences, G. pannosa is included in the Gelidiella clade with 100% bootstrap support in neighbor‐joining (NJ) analysis and 99% in maximum parsimony (MP) analysis. Pterocladiella caerulescens and P. caloglossoides are included in the Pterocladiella clade with 99.7% bootstrap support in NJ analysis and 100% in MP analysis. Each type of secondary rhizoidal attachment is completely consistent with the respective genus clade, which suggests that this morphological characteristic reflects phylogeny within the order Gelidiales.     

Agar from some Hawaiian red algae

From describing the agars of Gelidiella acerosa Forssk., Gelidium pluma Loomis, G. pusillum (Stackh.) Lejolis, Gracilaria abbottiana Hoyle, G. bursapastoris (Gmelin) Silva, G. canaliculata (Kützing) Sonder, G. coronopifolia J.Ag., G. epihippisora Hoyle, Pterocladia caerulescens (Kützing) Santelices and P. capillacea (Gmelin) Born. & Thur. as found in Hawaiian samples of these species, it is concluded that the species of Gelidium and especially Pterocladia and Gelidiella may merit more consideration for usage due to their agar gel strengths.The nature of the gel from Gracilaria abbottiana suggests the generic status might well be reexamined. The agars from the Gelidiella and the other Gracilaria species should be studied further for their prospective values to the food industry other than gel strength. Mixtures of the agars from G. bursapastoris and G. coronopifolia would merit attention for the taste texture of their mixtures.     

Taxonomic review of the species of Pterocladia (Gelidiales, Rhodophyta)

Segregating Pterocladiella from Pterocladia stimulated new taxonomic studies of the species originally assigned to Pterocladia. A total of 28 species are ascribed to the genus, one of them with doubts. Thirteen of the 27 names are synonyms. Three of the remaining 14 species belong with Gelidium, including G. americanum, G. mcnabbianum (Dawson) comb. nov. and G. musciformis. Seven other species belong with Pterocladiella, including P. bartlettii (Taylor) comb. nov., P. bulbosa, P. caerulescens, P. caespitosa (Kylin) comb. nov., P. caloglossoides (Howe) comb. nov., P. capillacea and P. melanoidea. Two species are retained in Pterocladia, the type P. lucida and P. rectangularis. Two others, P. heteroplatos and P. media are placed in incertae sedis as additional studies of fertile materials are needed to determine their generic status. The genus Pterocladia now appears to include two large-sized species restricted to Australia-New Zealand. Pterocladiella has 8 small-sized species (including P. minima), mainly inhabiting tropical and subtropical waters. Future research documenting sexual reproduction in Gelidiella and solving the presently recognized heterogeneity in Gelidium will help to trace the relationships between Pterocladiella and these two genera. This revised version was published online in June 2006 with corrections to the Cover Date.     

Structure and properties of agar from two unexploited agarophytes from Venezuela

The red seaweeds Gelidiella acerosa and Gracilaria mammillaris growing along the coast of Venezuela were investigated as potential economic sources of agar. Agar extracted from Gracilaria mammillaris accounted for 27% of the algal dry weight but had quite a poor gelling ability because of the presence of alkali-stable sulphate groups on the D-galactose residue. However, the gel strength of its aqueous solutions was considerably enhanced by the addition of potassium, sodium and calcium ions (up to 1N). On the contrary, the galactan from Gelidiella acerosa (yield of about 20% w/w) exhibited quite good properties. In particular, the gel strength was comparable to that of commercial agaroses. Sulphate esters were not detectable by chemical methods and NMR spectroscopy revealed an agarose backbone with a high degree of methylation on both D and L-galactose residues.     

Karyology and agar analysis of the agarophyteGelidiella acerosa (Forsskål) Feldmannet Hamel from the Philippines

Microspectrophotometry with the DNA-localizing fluorochrome DAPI demonstrated ploidy level differences in tetrasporophytic and presumptive gametophytic phases ofGelidiella acerosa from the Philippines. Comparison of mean nuclear DNA (I _f ) values to chicken erythrocytes (RBC) resulted in an estimate of 0.32 pg/2 C genome. Karyological studies with aceto-orcein revealed a chromosome complement of six bivalents during diakinesis of tetrasporocytes. The agar yield ranges from 13–24% dry weight, depending on the method of extraction. Agar extraction in 1 N NaOH resulted in an increased gel strength of 189 g cm^–2 at 1.5% concentration. Infrared spectroscopy indicated a relatively high sulfate content in native agar. The low (61 °) melting temperature is indicative of high sulfation and small molecular size.     

Ligulate Desmarestia (Desmarestiales,Phaeophyceae) revisited: D. japonica sp. nov. and D. dudresnayi differ from D. ligulata

The phylogeny of ligulate and sulfuric‐acid containing species of Desmarestia, occurring worldwide from polar to temperate regions, was revised using a multigenic and polyphasic approach. Sequence data, gametophyte characteristics, and sporophyte morphology support reducing a total of 16 taxa to four different species. (1) D. herbacea, containing broad‐bladed and highly branched forms, has dioecious gametophytes. The three other species have monoecious gametophytes: (2) D. ligulata which is profusely branched and, except for one subspecies, narrow‐bladed, (3) Japanese ligulate Desmarestia, here described as D. japonica sp. nov., which is morphologically similar to D. ligulata but genetically distant from all other ligulate taxa. This species may have conserved the morphology of original ligulate Desmarestia. (4) D. dudresnayi, including unbranched or little branched broad‐bladed taxa. A figure of the holotype of D. dudresnayi, which was lost for decades, was relocated. The taxonomy is complemented by a comparison of internal transcribed spacer and cytochrome c oxidase subunit I (cox1) as potential barcode loci, with cox1 offering good resolution, reflecting species delimitations within the genus Desmarestia.     

New and old problems in the taxonomy of the Gelidiales (Rhodophyta)

The order Gelidiales includes over 140 agar-producing taxa. Many species are taxonomically confused; the boundaries of one family and all but four genera recently have been contested, and the controversy over ordinal status has lasted for over 25 years. This study reviews recent developments in the taxonomy of the group and suggests future areas for studies. The order cannot be defined by a few exclusive characters, as intended in the past, but it shows a unique combination of characters. Additional studies on Gelidiella and Acanthopeltis seem advisable to clarify family limits. The segregation of Onikusa and Pterocladiastrum is doubtful. Only three of six characters discriminate Gelidium from Pterocladia. None allows complete generic segregation and all need variability studies. Analysis of nomenclatural types in the light of morphological variation would permit an understanding of species limits in Gelidium and Pterocladia. Similar studies are needed in Gelidiella and Ptilophora.     

New insights into the pollen morphology of the genus Gunnera (Gunneraceae)

Pollen grains from ten species of Gunnera, chosen to represent the six different subgenera in the genus, were examined using light and scanning electron microscopy. The aim of the study was to explore characters that have the potential to define different types of pollen within Gunnera and to study the evolution of these characters in light of the phylogeny of the genus. According to our results, there are three main types of pollen in the examined species of Gunnera. Type 1, unique for the South American species G. herteri (subgenus Ostenigunnera), is characterised by an imperfect reticulum with sinuous undulating-creasted muri. A reticulum with equidimensional polygonal lumina is typical for the plesiomorphic type of pollen (type 2) present in subgenera Gunnera, Misandra and Panke. Lastly, pollen grains of subgenera Pseudogunnera and Milligania are characterised by a reticulum with lumina of variable shape and size (type 3). In G. macrophylla (subgenus Pseudogunnera), the lumina in the apocolpia are of a different shape and size from the lumina in the mesocolpia (type 3a), while in G. dentata, G. monoica and G. cordifolia (subgenus Milligania), the lumina are identical in the apocolpium and the mesocolpium (type 3b).

The identification of pollen types will possibly allow the interpretation of the different specimens of Tricolpites reticulatus, the fossil species believed to be allied to the extant Gunnera.

In addition to the revision on the pollen of Gunnera, a brief comparison between the pollen of this genus and its sister group Myrothamnus is reported.     

Seasonal variation in the biomass, quantity and quality of agar from Gelidiella acerosa (Forsskal) Feldmann et Hamel (Gelidiales, Rhodophyta) from the Gulf of Mannar Marine Biosphere Reserve, India

The Gulf of Mannar on the southeast coast of India, which has recently been declared as biosphere reserve, is the main harvesting place of Gelidiella acerosa for the Indian agar industry. The biomass harvested from natural stocks was estimated to be over 10 000 tonnes dry weight (DW) in the last two decades and is a serious cause of concern on long term sustainability of this valuable resource from this region. The present study reports the seasonal variation in the biomass and agar yield and quality from G. acerosa in four different habitats such as Rameswaram (rocky intertidal), Ervadi (lower intertidal), Sethukarai (subtidal) and Krusadai Island (lagoon reef area). A maximum biomass of 260 ± 26 g DW m^?2 was recorded from Ervadi, whereas Sethukarai showed the highest percentage cover (69.83 ± 4.83%) and density (208.20 ± 30.16 plants m^?2). Biomass, percentage cover and density were lowest in Rameswaram and significantly lower (P < 0.001) than the other three stations. A single peak in biomass was observed with autumn maxima in Ervadi and Rameswaram and southwest monsoon maxima in Sethukarai and Krusaidai Island. Length of G. acerosa was maximum (9.65 ± 0.25 cm) in Ervadi and the branch index value was maximum (24.70 ± 4.01 br^?1 g^?1 DW) for Rameswaram. Agar yield (37.24 ± 7.59%) and gel strength (448.66 ± 6.50 g/cm²) were higher in Sethukarai plants. The agar yields attained a peak in the northeast monsoon and decreased in summer, whereas a reverse trend was observed for gel strength. Evidently, agar yield showed a strong negative correlation with gel strength (P < 0.0001) and gelling (P < 0.0001) and melting temperatures (P < 0.01). The single annual peak in biomass observed in the present study, as compared with two peaks reported earlier, are attributed to the continuous overharvesting that would have had an effect on the overall annual biomass production. The findings of this study reveal that a single harvest during the autumn months (January to March) could yield optimum biomass with moderate agar and that would be the best for sustainable usage and conservation of this resource from this region.     

The rudist bivalve genus Gorjanovicia (Radiolitidae,Hippuritoidea) a revision of species based on quantitative analysis of morphological characters

Abstract: The rudist bivalve genus Gorjanovicia Pol?ak, 1967 from Istria, Croatia, is currently known from the Coniacian/Maastrichtian of the peri‐Adriatic and Balkan regions and includes 23 nominal species, defined mainly on shell ornamentation and radial bands. However, a re‐appraisal of ‘Radiolites’endrissi Boehm, 1927 shows the type species of the genus Gorjanovicia, G. costata Pol?ak, 1967, to be a junior synonym of Boehm’s species, which thus takes priority as the type species of Gorjanovicia. Our revision of the 24 species thus described from the literature is based on analysis of a set of 21 characters that include the dimensions, shape and ornamentation of the right valve. Sixteen variables are defined from combinations of these 21 characters and subjected to multiple correspondence analysis (MCA) and Hill and Smith analysis (HSA), with cluster analysis, which has allowed us to distinguish three taxonomic groups, each defined by a key species: Gorjanovicia endrissi (Boehm), G. ugarensis Sli?kovi? and G. kvarneri Pol?ak. Cluster analysis identifies three groups of associated variables and suggests that a limited number of characters may be used to recognize the foregoing three taxonomic entities. MCA performed on four variables (the shapes of the anterior radial band, posterior radial band and interband and the width of the anterior band relative to the posterior band) reveals the same three taxonomic groups as in the MCA based on 16 variables. We conclude that the four variables in question may thus be used as specific diagnostic characters and that the genus Gorjanovicia is thereby represented by just three species, Gorjanovicia endrissi, G. ugarensis and G. kvarneri, instead of the 24 described in the literature. Specific assemblages from the peri‐Adriatic, pre‐Apulian and Western Pontides regions are nearly identical, a pattern that suggests free faunal exchanges within the distributional area of the genus Gorjanovicia. The palaeobiogeographical distribution of species corresponds with a relatively narrow palaeolatitudinal range in the subtropical portion of the eastern Mediterranean Tethys.     

The Phylogeny of Acetic Acid Bacteria Based on the Partial Sequences of 16S Ribosomal RNA: The Elevation of the Subgenus Gluconoacetobacter to the Generic Level

Thirty-six strains of acetic acid bacteria classified in the genera Acetobacter, Gluconobacter, and Acidomonas were examined for their partial base sequences in positions 1220 through 1375, 156 bases, of 16S rRNA. The strains of the Q₁₀-equipped Gluconobacter species examined were divided into two subgroups, which included the type strains of Gluconobacter oxydans, the type species of the genus Gluconobacter, and of a second species, Gluconobacter cerinus, respectively. The base differences numbered four between the two type strains. The strains of the Q₉-equipped species examined classified in the type subgenus Acetobacter of the genus Acetobacter were not very distant phylogenetically from those of the genus Gluconobacter. The calculated number of base differences was 9–6 between the type strains of G. oxydans and G. cerinus and the type strains of Acetobacter aceti and Acetobacter pasteurianus. In contrast, the strains of the Q₁₀-equipped species examined classified in the subgenus Gluconoacetobacter of the genus Acetobacter were very distant phylogenetically from those of the Acetobacter and Gluconobacter species mentioned above. The number of base differences was calculated to be 14-8. Furthermore, the strains of the methanol-assimilating, Q₁₀-equipped species of the genus Acidomonas examined were located in phylogenetically isolated positions. The type strain of Acidomonas methanolica (≡ Acetobacter methanolicus), the type species of the genus Acidomonas, had 16–9 base differences. The data obtained here indicated that the members of the subgenus Gluconoacetobacter of the genus Acetobacter can be distinguished at the generic level. The new genus Gluconoacetobacter was proposed with the type species, Gluconoacetobacter liquefaciens, in recognition of the genus Acidomonas along with the genera Acetobacter and Gluconobacter in the classification of the acetic acid bacteria.     

Pollen morphology of the genus Gagea (Liliaceae) in Iran

Pollen grains of 26 species of the genus Gagea distributed in Iran were examined by light and scanning electron microscopy. Detailed pollen morphological characteristics are given for these species. Among the studied species, the newly described G. iranica together with G. olgae and G. graminifolia possess the smallest pollen grains, and the widely distributed G. lutea the largest ones. Our studies show that the sculpturing of exine provides valuable characters for separating the species, sometimes even for closely related ones, and delimitation of natural groups within the genus. The exine of the genus Gagea is in most cases perforated upon tectum or rarely tectate-columellate. The muri are solid or structured, compound, simpli-, dupli- or pluricolumellate. It seems that the structure of muri is very important in recognizing natural groups within the genus. Tectal perforations vary from <0.2 to 2.0 μm in diameter among the studied species. Regarding sculpturing of the exine in proximal face, four basic types of pollen grains can be distinguished: reticulate, microreticulate, foveolate and perforate. Within the reticulate type there is sufficient variation in exine structure at distal face to describe three subtypes: reticulate, microreticulate and perforate. A diagnostic key is given for all studied taxa based on palynomorphological characters. For a limited number of populations of selected Iranian species of Gagea, further aspects of pollen biology were studied. It seems that populations with ploidy levels other than diploidy, show a low percentage of pollen fertility. Moreover, the rate of pollen fertility is correlated with the manner of the reproduction in certain species.     

Carbohydrates of the seaweeds,Desmarestia ligulata and D. firma

Crystalline mannitol and some oligosaccharides were separated from ethanolic extracts of Desmarestia ligulata and D. firma. Laminaran, ‘fucans’ and alginic acid were also isolated from both species. The laminaran from D. ligulata comprised both M- and G-chains but no M-chains were found in the laminaran from D. firma. In both species the amount of ‘fucan’ was small, particularly in D. firma. Both ‘fucans’ contained glucuronic acid, galactose, xylose and fucose and that from D. ligulata also contained mannose. After sequential extraction of D. ligulata with water, acid and alkali evidence was obtained for the presence of cellulose, a uronan, and protein in the residual material.     

Identification of true Gloiopeltis furcata (Gigartinales,Rhodophyta) and preliminary analysis of its biogeography

In the red algal genus Gloiopeltis, five species (G. complanata, G. dura, G. frutex, G. furcata and G. tenax) are currently recognized, but genetic analyses have suggested considerably greater species diversity. Gloiopeltis specimens formed nine highly supported clades, six of which are morphologically referable to G. furcata. In order to identify the clade corresponding to true G. furcata, we examined the morphology and genetics of the type specimen of Dumontia furcata Postels & Ruprecht, the basionym of G. furcata, housed in the Herbarium of V.L. Komarov Botanical Institute (LE). A clade comprising the type and specimens from the northwestern to northeastern Pacific Ocean was determined to correspond G. furcata. We concluded that the type locality of G. furcata is Sitka, Alaska, based on the identity of haplotypes. We investigated the genetic divergence of populations within this species, using specimens covering most of its distributional range. We confirmed the merger of G. minuta and G. dura with G. furcata.     

The genus Gottschelia Grolle (Jungermanniopsida,Lophoziaceae) in China,with a description of G. grollei,sp. nov.

Abstract

The genus Gottschelia Grolle is reported as new to mainland China, from Yunnan Province. Previously G. schizopleura (Spruce) Grolle was the only known Chinese species, reported from Taiwan. However, two further species have recently been found in the Gaoligong Shan range, Yunnan Province, G. patoniae Grolle, Schill & D.G. Long, previously known from the East Himalaya of Nepal and India (Sikkim) and G. grollei D.G. Long & Váňa, described here as a new species endemic to China, the fourth known species in the genus. The differences between the three Chinese species are enumerated with notes on distribution and ecology.     

Phylogenetic diversity of isolates belonging to genera Geobacillus and Aeribacillus isolated from different geothermal regions of Turkey

The phylogenetic diversity of 31 thermophilic bacilli belonging to genera Geobacillus and Aeribacillus were investigated which were isolated from various geothermal sites of Turkey. Twenty-seven of these isolates were found to be belonged within the genus Geobacillus, whereas 4 of them were identified as Aeribacillus pallidus. The comparative 16S rRNA gene sequence analyses revealed that the A. pallidus isolates displayed sequence similarity values from 98.0 to 99.6% to their closest relative. Furthermore, Geobacillus isolates showed sequence similarity values from 88.9 to 99.8% with the reference type strains. According to the phylogenetic analysis, isolates belonging to genus Geobacillus were diverged into nine clusters and among these isolates, 19 of them were identified as strains related to G. caldoproteolyticus, G. thermodenitrificans, G. stearothermophilus, G. thermoglucosidasius and G. toebii with the most abundant 13 isolates from G. caldoproteolyticus. Four of the Geobacillus isolates were named as unidentified mix group, as they found to be genetically very homogenous like their closely related type species: G. thermoleovorans, G. vulcani, G. lituanicus, G. kaustophilus, G. caldovelox, G. caldotenax, and G. uralicus. Moreover, the sequence comparisons of E173a, E265, C161ab and A142 isolates demonstrated that they represented novel species among genus Geobacillus as they shared lower than 96.7% sequence similarity to all the described type species. The AluI-, HaeIII- and TaqI-ARDRA results were in congruence with the 16S rRNA gene sequence analyses. By ARDRA results, the isolates were able to be differentiated and clustered, the discriminative restriction fragments of these isolates and type species were determined and the novelty of E173, E265, C161ab and A142 isolates could be displayed. Some differentiating phenotypic characters and the ability of amylase, glucosidase and protease production of these bacilli were also studied and biotechnologically valuable thermostable enzyme producing isolates were introduced in order to use in further studies.     

Balechina and the new genus Cucumeridinium gen. nov. (Dinophyceae), unarmored dinoflagellates with thick cell coverings

The genus Balechina (=subgenus Pachydinium) was established for heterotrophic gymnodinioid dinoflagellates with a thick cell covering. The type species, B. pachydermata (=Gymnodinium pachyderm‐atum), showed numerous fine longitudinal striae, whereas B. coerulea (=G. coeruleum) showed ~24 prominent longitudinal surface ridges or furrows and a distinctive blue pigmentation. We have investigated the morphology and molecular phylogeny of these taxa and the species Gymnodinium cucumis, G. lira and G. amphora from the western Mediterranean, Brazil and Japan. Sudden contractions at the cingulum level were seen in B. pachydermata, which also showed a high morphological variability which included morphotypes that have been described as Amphidinium vasculum, G. amphora, G. dogielii and G. gracile sensu Kofoid and Swezy. Molecular phylogeny based on small subunit rRNA gene sequences revealed that Balechina coerulea, G. cucumis and G. lira formed a clade distantly related to the clade of the type species, B. pachydermata, and G. amphora. We propose the new genus Cucumeridinium for the species with longitudinal ridges and a circular apical groove (Cucumeridinium coeruleum comb. nov., C. lira comb. nov. and C. cucumis comb. nov.), and Gymnodinium canus and G. costatum are considered synonyms of C. coeruleum. The genus Balechina remains for the species with a double‐layer cell covering, bossed surface with fine striae, and an elongated elliptical apical groove. At present, the genus is monotypic containing only B. pachydermata.