Competitive exclusion: phylogeography’s ‘elephant in the room’?

Phylogeographic and evolutionary research programmes have successfully elucidated compelling genetic signatures of earth history. Particularly influential achievements include the demonstration of postglacial recolonization patterns for high-latitude taxa and phylogenetic demonstration of the 'progression rule' along oceanic island chains such as Hawaii. While both of these major biogeographic patterns clearly rely on rapid dispersal over long distances, their phylogeographic detection also apparently relies on the competitive exclusion of secondary dispersers. Such exclusion could occur either between or within species and might reflect fitness differences between lineages or, alternatively, neutral demographic processes (e.g. 'high-density blocking'). Regardless, such spatial genetic patterns would be rapidly eroded were it not for the failure of subsequent dispersers to contribute genetically to newly colonized populations. In addition to its role in revealing colonization patterns, competitive exclusion may also explain the maintenance of historic phylogeographic disjunctions long after the original physical barriers to dispersal have ceased to exist. Additionally, some of the most persuasive evidence of competitive exclusion comes from studies of anthropogenic extinction, where surviving lineages have subsequently expanded their ranges, apparently benefitting from the demise of their prehistoric sisters. Broadly, these biogeographic paradigms are united by the 'disconnect' between dispersal and colonization success, the latter being heavily influenced by inter- and intraspecific competition. Despite its apparent importance, such exclusion (especially within species) has received virtually no attention in the phylogeographic literature. Future studies should aim to test directly for the role of competitive exclusion in constraining the biogeography of highly dispersive taxa.     

Mitochondria and peroxisomes: Are the ‘Big Brother’ and the ‘Little Sister’ closer than assumed?

Mitochondria and peroxisomes are essential subcellular organelles in mammals. Despite obvious differences, both organelles display certain morphological and functional similarities. Recent studies have elucidated that these highly dynamic and plastic organelles share components of their division machinery. Mitochondria and peroxisomes are metabolically linked organelles, which are cooperating and cross-talking. This review addresses the dynamics and division of mitochondria and peroxisomes as well as their functional similarities to provide insight as to why these organelles share the fission machinery in evolutionary aspects.     

Translational biomaterials — the journey from the bench to the market — think ‘product’

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Herb endozoochory by cockatoos: Is ‘foliage the fruit’?

Establishing whether herb seed endozoochory is accidental or has evolved independently or in combination with other dispersal mechanisms may be valuable in the study of plant–animal interactions, but it remains unexplored for birds. We tested whether an Australian cockatoo, the galah (Eolophus roseicapilla), swallows entire seeds when feeding on other tissues without subsequent seed digestion, thus enhancing seed dispersal (the ‘foliage is the fruit’ hypothesis). Our preliminary sampling provides strong evidence supporting that this seed predator also acts as a legitimate endozoochorous disperser. A large proportion of droppings contained numerous seeds of six herb species of three plant families, surviving gut passage to be dispersed as viable propagules. The wide range in the number of seeds found in combinations with up to five species in particular droppings suggests both simultaneous and sequential passive ingestion without seed digestion and/or focused seed predation and digestion. As expected for inadvertent ingestion and inefficient digestion, our findings suggest that seed number and richness of dispersed plants are associated traits in this particular mutualistic interaction. This relationship can have important implications in community‐wide processes, favouring herbs whose seeds are disseminated in a viable state over those predated or negatively affected by gut transit.     

Extended π‐Bridge in Organic Dye‐Sensitized Solar Cells: the Longer,the Better?

The elongation of π‐conjugated bridges between the donor (D) and the acceptor (A) represents a feasible strategy towards enhancement of light‐harvesting in both breadth and depth of organic D‐π‐A dyes suitable for nanocrystalline TiO₂‐based dye‐sensitized solar cells (DSSCs). Here, a series of organic dyes with elongating conjugated bridges is synthesized and characterized. DSSC devices employing a cobalt (II/III) redox electrolyte are fabricated using these dyes as light‐harvesting sensitizers. Compared to a dye with the 3,4‐ethylenedioxythiophene (EDOT) linker ( G188 ), the three counterparts with further extended π‐bridges present gradually red‐shifted electronic absorption spectra and a persistent decrease in oxidation potential. The photocurrent action spectra show that the extension of π‐conjugated bridges decreases the open‐circuit photovoltage. The best performance is shown in G268 with a short‐circuit photocurrent density (J_sc) of 16.27 mA cm², an open‐circuit photovoltage (V_oc) of 0.83 V, and a fill factor (FF) of 0.67, corresponding to an overall conversion efficiency of 9.24%. Unexpectedly, G270, which has with the longest π‐bridge , showed the lowest J_sc, V_oc, and efficiency.     

Mutational analysis of basic residues in the N-terminus of the rRNA:m<Superscript>6</Superscript>A methyltransferase ErmC′

Erm methyltransferases mediate the resistance to the macrolide-lincosamide-streptogramin B antibiotics via dimethylation of a specific adenine residue in 23S rRNA. The role of positively charged N-terminal residues of the ErmC' methyltransferase in RNA binding and/or catalysis was determined. Mutational analysis of amino acids K4 and K7 was performed and the mutants were characterized in in vivo and in vitro experiments. The K4 and K7 residues were suggested not to be essential for the enzyme activity but to provide a considerable support for the catalytic step of the reaction, probably by maintaining the optimum conformation of the transition state through interactions with the phosphate backbone of RNA.     

Spermatogenic ultrastructure in the anomalodesmatan bivalve Myochama anomioides (Mollusca: Myochamidae) – does the nucleus help position the ‘temporary’ acrosome?

Spermatogenic ultrastructure in the marine bivalve mollusc Myochama anomioides (Myochamidae) is described and contrasted with other bivalves, especially other euheterodonts. Small (0.1 μm diameter), primary proacrosomal vesicles produced in spermatocytes give rise to much larger (0.4 μm diameter) secondary proacrosomal vesicles in early spermatids, which in turn form the dished‐shaped, definitive acrosomal vesicle (diameter 1.0 μm) of later spermatids. The acrosomal vesicle acquires a deposit of subacrosomal material and comes to lie close to or in contact with the plasma membrane. The acrosomal complex (acrosomal vesicle + subacrosomal material) initially positions itself at the apex of the condensing, fibrous nucleus (the so‐called temporary acrosome position), but subsequently begins to move posteriorly. The condensing nucleus becomes markedly folded so that its apex is posteriorly orientated towards the migrating acrosomal complex and the midpiece (mitochondria and centrioles). The close spatial relationship of nuclear apex to acrosomal complex during this folding strongly suggests that acrosomal migration in M. anomioides is assisted, at least in part, by movement of the late spermatid nucleus. Similar nuclear folding has previously been demonstrated in an early stage of fertilization in another anomalodesmatan (Laternula limicola) raising the possibility that one event might be a reversal of the other.     

Are the “100 of the world’s worst” invasive species also the costliest?

Biological Invasions - Biological invasions are increasing worldwide, damaging ecosystems and socioeconomic sectors. Two decades ago, the “100 of the world’s worst” invasive alien...     

Mind the gap: how do climate and agricultural management explain the ‘yield gap’ of croplands around the world?

Aim As the demands for food, feed and fuel increase in coming decades, society will be pressed to increase agricultural production – whether by increasing yields on already cultivated lands or by cultivating currently natural areas – or to change current crop consumption patterns. In this analysis, we consider where yields might be increased on existing croplands, and how crop yields are constrained by biophysical (e.g. climate) versus management factors. Location This study was conducted at the global scale. Methods Using spatial datasets, we compare yield patterns for the 18 most dominant crops within regions of similar climate. We use this comparison to evaluate the potential yield obtainable for each crop in different climates around the world. We then compare the actual yields currently being achieved for each crop with their ‘climatic potential yield’ to estimate the ‘yield gap’. Results We present spatial datasets of both the climatic potential yields and yield gap patterns for 18 crops around the year 2000. These datasets depict the regions of the world that meet their climatic potential, and highlight places where yields might potentially be raised. Most often, low yield gaps are concentrated in developed countries or in regions with relatively high‐input agriculture. Main conclusions While biophysical factors like climate are key drivers of global crop yield patterns, controlling for them demonstrates that there are still considerable ranges in yields attributable to other factors, like land management practices. With conventional practices, bringing crop yields up to their climatic potential would probably require more chemical, nutrient and water inputs. These intensive land management practices can adversely affect ecosystem goods and services, and in turn human welfare. Until society develops more sustainable high‐yielding cropping practices, the trade‐offs between increased crop productivity and social and ecological factors need to be made explicit when future food scenarios are formulated.     

The < folding problem >: can one predict the structure of proteins?

A protein's three-dimensional structure is encoded in its amino acid sequence. The < folding problem > consists in predicting one based on the other. This classic problem of molecular biology has seen important steps forward in recent years. The raw power of today's computers, along with the mobilization of thousands of internauts, have allowed several small proteins to be literally folded up in a computer, through simulations. Moreover, international programs for structural genomics aim to determine the experimental structures of hundreds of proteins in several organisms, and to model the others by homology to known structures. This will lead to a nearly-complete map of the protein structure universe, shedding light on the past evolution and current functions of today's proteins, and suggesting new targets for therapeutic strategies.     

Occlusal forces and mandibular bone strain: Is the primate jaw “overdesigned”?

Finite element modelling of the function of the periodontium and surrounding alveolar bone suggests these tissues are subjected to unusually large strains in comparison with the bone of the basal mandibular corpus. These studies, in addition to certain experimental investigations, have led to the suggestion that the strains experienced in the basal mandibular corpus are not functionally important. Under this view, size and shape of the basal corpus are not functionally linked to masticatory forces. Since previous comparative investigations have been premised on the assumption that masticatory strains in the basal corpus are functionally important, the assertion that masticatory stresses are concentrated primarily in the alveolar process undermines the credibility of this body of work. The hypothesis that the biomechanical effects of masticatory forces are localized in the alveolar process can be evaluated by reference to a number of bone strain investigations, as well as through consideration of current understanding of bone biology and behavior. Experimental studies indicate that the effects of occlusal forces during mastication are quite apparent in alveolar bone, although relatively large strains are also observed in regions well-removed from a loaded alveolus. It is also apparent that both alveolar and basal mandibular bone are subject to bending and twisting strains associated not only with occlusal forces, but also with muscular and condylar reaction forces. The result is that strain levels in alveolarvs.basal bone may be roughly similar, in contradiction to some published theoretical models. Based on empirical evidence and theoretical considerations, it is premature to conclude that mandibular corpus size and shape are not functionally linked to the biomechanics of chewing and biting.     

Tracking the fate of digesta <Superscript>13</Superscript>C and <Superscript>15</Superscript>N compositions along the ruminant gastrointestinal tract: Does digestion influence the relationship between diet and faeces?

Faecal stable isotope compositions reflect wildlife diets, if digestive processes along the gastrointestinal tract (GIT) do not alter diet–faeces isotopic relationships in an unpredictable way. We investigated ¹³C and ¹⁵N compositions of digesta along the ruminant GIT, using Saanen dairy goats kept on pure grass hay or browse for >20 days. Isotopic changes occurred in the ventral rumen, and in the small intestine, where digesta had significantly higher δ¹³C and δ¹⁵N (associated with lower C or higher N content, respectively) values relative to other GIT sites. However, effects on isotope fractionation were small (∼1.0‰ for δ¹³C and ∼ 2.0‰ for δ¹⁵N), and were reversed in the hindgut such that faecal isotope compositions did not differ from the foregut. No other substantial isotopic changes occurred across GIT sites, despite the morphophysiological complexity of the ruminant GIT. We found similarly small differences across GIT components of rheem gazelles (Gazella leptoceros) fed a mixture of C₃ lucerne and C₄ grass, although in this case faeces were ¹⁵N-depleted relative to other GIT components. Along with differences in δ¹⁵N between goats fed browse or grass, this result implies a systematic difference in diet–faeces δ¹⁵N relationships, contingent on the botanical composition of ruminant diets. Thus, while our results support faecal δ¹³C as a reliable proxy for wildlife diets, further work on factors influencing faecal ¹⁵N abundance is needed. Finally, we note high levels of isotopic variability between individuals fed the same diets, even accounting for the relatively short duration of the experiments, suggesting an important influence of stochasticity on isotope fractionation.     

Validity of the bereavement exclusion to major depression: does the empirical evidence support the proposal to eliminate the exclusion in DSM-5?

The DSM-IV major depression "bereavement exclusion" (BE), which recognizes that depressive symptoms are sometimes normal in recently bereaved individuals, is proposed for elimination in DSM-5. Evidence cited for the BE's invalidity comes from two 2007 reviews purporting to show that bereavement-related depression is similar to other depression across various validators, and a 2010 review of subsequent research. We examined whether the 2007 and 2010 reviews and subsequent relevant literature support the BE's invalidity. Findings were: a) studies included in the 2007 reviews sampled bereavement-related depression groups most of whom were not BE-excluded, making them irrelevant for evaluating BE validity; b) three subsequent studies cited by the 2010 review as supporting BE elimination did examine BE-excluded cases but were in fact inconclusive; and c) two more recent articles comparing recurrence of BE-excluded and other major depressive disorder cases both support the BE's validity. We conclude that the claimed evidence for the BE's invalidity does not exist. The evidence in fact supports the BE's validity and its retention in DSM-5 to prevent false positive diagnoses. We suggest some improvements to increase validity and mitigate risk of false negatives.