Quantitative and simultaneous detection of four foodborne bacterial pathogens with a multi-channel SPR sensor

We report the quantitative and simultaneous detection of four species of bacteria, Escherichia coli O157:H7, Salmonella choleraesuis serotype typhimurium, Listeria monocytogenes, and Campylobacter jejuni, using an eight-channel surface plasmon resonance (SPR) sensor based on wavelength division multiplexing. Detection curves showing SPR response versus analyte concentration were established for each species of bacteria in buffer at pH 7.4, apple juice at native pH 3.7, and apple juice at an adjusted pH of 7.4, as well as for a mixture containing all four species of bacteria in buffer. Control experiments were performed to show the non-fouling characteristics of the sensor surface as well as the specificity of the amplification antibodies used in this study. The limit of detection (LOD) for each of the four species of bacteria in the tested matrices ranges from 3.4 x 10(3) to 1.2 x 10(5) cfu/ml. Detection curves in buffer of an individual species of bacteria in a mixture of all four species of bacteria correlated well with detection curves of the individual species of bacteria alone. SPR responses were higher for bacteria in apple juice at pH 7.4 than in apple juice at pH 3.7. This difference in sensor response could be partly attributed to the pH dependence of antibody-antigen binding.     

Effect of pH on viability of Entodinium caudatum, Entodinium exiguum, Epidinium caudatum, and Ophryoscolex purkynjei in vitro

Cultures of Entodinium caudatum, Entodinium exiguum, Epidinium caudatum, and Ophryoscolex purkynjei were grown and transferred in poorly buffered media prepared using different concentrations of sodium bicarbonate and a nitrogen gas phase. By transferring every 12 or 24 h, culture pH was gradually decreased until the protozoa disappeared. The cultures were transferred by placing half of the culture into an equal volume of fresh medium, resulting in pH fluctuations similar to those in the rumen, resulting from fermentation, eating, and saliva production. All four species appeared to maintain their concentrations around pH 5.8, but numbers decreased as pH values fell below 5.6. The four species were similar in that they all survived above pH 5.3. These results differ from previous reports in which Entodinium species appeared to be more tolerant to low pH than all other species of rumen ciliates. No adaptation to low pH was observed in Epidinium caudatum cultures after recovery from pH 5.4 medium containing only one or two viable cells.     

Salt glands of Armeria canescens (Host) Boiss.: Morphological and functional aspects

The morphology and functionality of salt glands in four Italian Armeria canescens populations were investigated. Microscopic analysis showed that salt glands consist of 16 cells arranged in four quadrants, including four subsidiary cells and 12 gland cells. The main secreted elements are K, Ca and Cl, although qualitative and quantitative differences were observed between gland and subsidiary cells. Soil characteristics like texture, pH and C/N ratio were shown to vary between population sites. The highest number of glands per leaf area was found in plants from Ca-rich sites. Although A. canescens is not a halophilous species, its salt glands were revealed to be active, suggesting that they could represent an ancestral character.     

Endocrine cells in the gastric mucosa of elasmobranch fishes. An ultrastructural study

The endocrine cells of gastric mucosa of two elasmobranch species were studied by light and electron microscopy. Five cell types were identified in the fundic mucosa, four of which are of "open type". All of them show pleomorphic granules of variable size, except those of the type V cell which are round in shape and of comparatively small diameter. Six different cell types are found in the pyloric mucosa, all of "open type" except for type XI cells which appear to be "closed". Pyloric types VIII, IX, X and XI cells show similar structural characteristics as fundus types I, V, II and IV respectively. Silver impregnation was also used at both light and electron microscopical levels. No functional classification or analogies with other vertebrate gastric endocrine cells were attempted as these would be too speculative on the basis of ultrastructural characteristics only.     

拉萨河流域浮游植物群落结构特征及与环境因子的关系

于2017年8月对拉萨河浮游植物群落组成、丰度、功能群以及多样性指数进行调查,利用典范对应分析法(CCA)分析浮游植物物种与水环境因子的关系。结果表明:流域种类组成以硅藻门(60.4%)为主,其次是绿藻门(20.8%),其余种类18.8%;物种平均丰度为3857cells/L,硅藻门94.6%,蓝藻门3.1%,绿藻门2.3%;种类少、丰度低是拉萨河流域浮游植物群落结构的主要特征;研究区优势种以菱形藻为主; MP、D和P是划分出来的15类功能群中的优势功能群,合计占总丰度的93%,剩余12类仅占7%; Margalef指数、Shannon-Wiener指数及Pielou's evenness指数平均值分别为1.41、1.77和0.5,单因素方差分析(ANOVA)表明三类多样性指数在各支流之间、干流与各支流之间无显著差异; CCA排序结果表明:p H、化学需氧量(CODCr)、总氮(TN)、总磷(TP)是影响拉萨河流域浮游植物群落结构的主要环境因子;同时,pH、TN、TP也是影响浮游植物功能群分布格局的主要因子。     

Effect of functional group richness and species richness in manipulated productivity–diversity studies: a glasshouse pot experiment

Species and functional group (grasses, legumes, creeping nonlegume forbs, rosette nonlegume forbs) richness of species assemblages composed of 16 species from four functional plant groups were manipulated to evaluate the productivity-diversity relationships in a greenhouse pot experiment. Pots were filled with sand, and supplied at two levels of nutrients. The plants were grown in monocultures, two, four, eight and 16 species mixtures. Individual two, four, and eight species mixtures differed in the richness of functional groups. Although the two characteristics of biodiversity, i.e. species and functional group richness, were necessarily correlated, it was shown that it is possible to separate their effect statistically, and also test for their common effect without pronounced loss of test power. There was a pronounced increase of average aboveground biomass and a mild increase in belowground biomass with biodiversity. The effect of functional group richness was more pronounced than the effect of the number of species. By using the method of Loreau and Hector (Nature 411 (2001) 72), selection and complementarity effects were statistically separated, and the overyielding index was calculated as a ratio of the productivity of a mixture to the productivity of its most productive component (to demonstrate transgressive overyielding). Positive values of complementarity and transgressive overyielding were both found, particularly in some rich communities and under high nutrient levels. Complementarity significantly increased only with functional group richness and mainly under high nutrients in the belowground biomass. Some species, when grown in monocultures, had decreased productivity under higher nutrients, and thus were more productive in mixtures than in monocultures. It seems that those species suffered from too high nutrient levels when grown in monocultures, but not in the presence of other species, which were able to use the nutrients in high concentrations and effectively decrease the nutrient levels. As a consequence, mixtures of high diversity were always more productive under high nutrients. The difference in species proportions between high and low nutrients, characterized by chord distance, increased with species richness. The relative change in productivity decreased with the number of functional groups. This suggests that species richness might lead to stabilization of aggregate characteristics (like total productivity) under changing environmental conditions by changing the proportions of individual species.     

A comparison between histochemically demonstrable Golgi-associated and bile canalicular TDP-ase activity in liver

Summary Histochemically demonstrable Golgi-associated TDP-ase activity in liver cells from cat, chicken, rat and frog has been investigated.This activity is highly substrate-specific, insensitive to aldehyde fixation, ethanol, acetate, lead and most enzyme inhibitors. It is stimulated by divalent manganese, calcium, magnesium and cobalt and optimum pH is at pH 6 to 7.The characteristics are identical for all four species but significant differences exist at a comparison with bile canalicular activity, Golgi-associated activity in other cells and biochemical findings.This study was supported in part by a grant from the Swedish Medical Research Council.     

高山红景天有性生殖过程及濒危原因的生态学分析

研究了高山红景天(Rhodiola sachalinensis)的生殖生态学特性,并探讨了其致濒的原因。高山红景天花药具4个小孢子囊,腺质绒毡层,初生造孢细胞直接行小孢子母细胞功能,小孢子四分体呈四面体形,小孢子形成初期有败育现象,成熟花粉2细胞,有二种类型花粉。胚珠倒生,大孢子四分体线形排列,功能大孢子位于合点端,胚囊发育属蓼型。高山红景天花粉败育是其濒危的内因,恶劣的生境条件及其大规模人工采挖是其濒危的主要原因     

海岛植物不同演替阶段植物功能性状与环境因子的变化规律

植物功能性状与环境之间的关系是功能性状研究的重点,环境因子驱使植物功能性状发生变化,进而推动群落发生演替。以平潭岛4个不同演替阶段的森林植被(灌草丛、针叶林、针阔混交林、常绿阔叶林)为研究对象,结合不同群落演替阶段的物种特征和群落结构,分析海岛不同演替阶段茎、叶功能性状的变化规律,以及功能性状与环境因子的关系。结果表明:(1)随着演替的进行,土壤养分和水分逐渐增加,土壤pH逐渐下降。比叶面积(SLA)、叶片氮含量(LNC)、叶片磷含量(LPC)、茎氮含量(SNC)、茎磷含量(SPC)下降后上升,叶厚度(LT)、叶片碳含量(LCC)、茎碳含量(SCC)与之相反,叶干物质含量(LDMC)、茎组织密度(STD)逐渐上升。(2)冗余分析表明,演替早期植物主要分布在土壤pH、容重高的贫瘠环境,拥有较高SLA、SNC、SPC、LPC的性状组合;演替后期植物主要分布在土壤养分和水分高的肥沃环境,拥有较高的STD、LDMC、LCC、LNC的性状组合。其中,土壤有机质和全氮含量是影响海岛植物演替过程中功能性状变化的关键环境因子。研究海岛植物功能性状与环境之间的关系随演替的变化规律,探讨各演替阶段功能性状和环境特征,以及功能性状如何响应环境变化。旨在为今后选择合适的树种进行海岛植被修复和重建提供依据。     

The reaction mechanism of the novel vanadium-bromoperoxidase. A steady-state kinetic analysis

The reaction of vanadium-bromoperoxidase from the brown alga Ascophyllum nodosum with hydrogen peroxide, bromide, and 2-chlorodimedone has been subjected to an extensive steady-state kinetic analysis. Systematic variation of pH and the concentrations of these three components demonstrate that the reaction model includes four enzyme species: native bromoperoxidase, a bromoperoxidase-bromide inhibitory complex, a bromoperoxidase-hydrogen peroxide intermediate, and a bromoperoxidase-HOBr species. This latter intermediate did not display any direct interaction with the nucleophilic reagent as oxidized bromine species (Br-3, Br2, and/or HOBr) were the primary reaction products. The generation of oxidized bromine species was as fast as the bromination of 2-chlorodimedone. The enzyme did not show any specificity with regard to bromination of various organic compounds. Formation of the bromoperoxidase-bromide inhibitory complex was competitive with the reaction between hydrogen peroxide and enzyme. From the steady-state kinetic data lower limits for the second-order rate constants at various pH values were calculated for individual steps in the catalytic cycle. This pH study showed that native enzyme must be unprotonated prior to binding of hydrogen peroxide (second-order association rate constant of 2.5.10(6) M-1.s-1 at pH greater than 6). The pKa for the functional group controlling the binding of hydrogen peroxide was 5.7 and is ascribed to a histidine residue. The reaction rate between bromide and enzyme-hydrogen peroxide intermediate also depended on pH (second-order association rate constant of 1.7.10(5) M-1.s-1 at pH 4.0).     

Seasonal community structure of macromycetes in Veracruz, Mexico

A study of phenological patterns in macromycete communities in Veracruz, Mexico was carried out in order to understand changes in community structure across regions of different vegetation types. Previous studies suggest that similarities in community composition occur when there are similarities in certain geographical and climatological characteristics, however they do not address functional groups or seasonal changes across regions. Macromycete communities in Veracruz showed similar species distribution patterns, but individual assemblages changed structure seasonally, changes that were strongly correlated with rainfall. Interestingly, the number of functional groups (species performing similar ecological functions) was not determined by rainfall, but the distribution of species within functional groups was determined by rainfall. Temperature did not appear to play a role in structuring community diversity at this regional scale. However, temperature and other environmental factors such as pH or light may be the mechanism triggering phenological patterns, and influencing the species pool at localized scales. This work brings new light to fungal community diversity patterns in a largely unknown group of species.     

Comparative histochemistry of the mucoproteic cells of the hypophysis from Rhamdia hilarii, Hypostomus punctatus, Prochilodus scrofa and Cyprinus carpio (Teleostei). Immunohistochemical identification of the gonadotropic cells

Adenohypophyseal cells showing positive histochemical reactions for mucosubstances were classified as type I-IV in Hypostomus (Plecostomus) punctatus (Loricariidae), Rhamdia hilarii (Pimelolidae), Prochilodus scrofa (Prochilodontidae) and Cyprinus carpio (Cyprinidae) according to cell shape, size, cytological characteristics and adenohypophyseal distribution. Cell types I and II are common to the four species, with each cell type showing very similar cytological and histochemical characteristics, in spite of different adenohypophyseal distribution of cell type II, according to the teleost species. Type I cells are globular basophils located in the proximal pars ditalis and are positive to PAS and Alcian blue pH 2.5 (AB) reactions, showing cytoplasmic vacuoles and changes in granule concentration in the mature phase of the gonadal cycle. The smaller type II cells are fusiform or oval basophils exhibiting a strong AB reaction but also reacting to PAS. Type III cells are located in the pars intermedia showing PAS-positive reaction. Considering different teleost species, these cells exhibit some variations specially in relation to cell size and shape which are not detected in mature male C. carpio. Otherwise cell type IV is only present in the rostral pars distalis of P. scrofa. They are weakly basophilic and negative to PAS, reacting strongly to AB. Only cell type I showed unequivocally positive immunohistochemical results with anti-salmon gonadotropin.     

Buffering capacity of bacilli that grow at different pH ranges.

Cytoplasmic buffering capacities and buffering by whole cells were examined in six bacterial species: Bacillus acidocaldarius, Bacillus stearothermophilus, Escherichia coli, Bacillus subtilis, Bacillus alcalophilus, and Bacillus firmus RAB. Acid-base titrations were conducted on whole cells and cells permeabilized with Triton X-100 or n-butanol. In all of the species examined, the buffering capacity of intact cells was generally a significant proportion of the total buffering capacity, but the magnitude of the buffering capacity varied from species to species. Over the entire range of pH values from 4 to 9.5, B. subtilis exhibited a cytoplasmic buffering capacity that was much higher than that of B. stearothermophilus, B. acidocaldarius, or E. coli. The latter three species had comparable cytoplasmic buffering capacities at pH 4 to 9.5, as long as optimal conditions for cell permeabilization were employed. All of the nonalkalophiles exhibited a decrease in cytoplasmic buffering capacity as the external pH increased from pH 5 to 7. At alkaline pH values, the two thermophiles in the study had particularly low cytoplasmic buffering capacities, and the two alkalophilic bacteria had appreciably higher cytoplasmic buffering capacities than any of the other species studied. Cytoplasmic buffering capacities as high as 1,100 nmol of H+ per pH unit per mg of protein were observed in alkalophilic B. firmus RAB. Since previous studies have shown that immediate cytoplasmic alkalinization occurs upon loss of the active mechanisms for pH homeostasis in the alkalophiles, the very high buffering capacities apparently offer no global protection of internal pH. Perhaps, the high buffering capacities reflect protective mechanisms for specific macromolecules or process rather than part of the mechanisms for bulk pH homeostasis.     

Soil pH accounts for differences in species distribution and leaf nutrient concentrations of Brazilian woodland savannah and seasonally dry forest species

Understanding the environmental factors shaping savannah and tropical forest boundaries is important to predict tropical vegetation responses to climate change and other human-mediated disturbances. To better understand the soil characteristics affecting the distribution of Cerradão (Brazilian woodland savannah) and seasonally dry forest (SDF), two vegetation types occurring next to each other in a similar seasonal climate in south-eastern Brazil, we compared several leaf chemical and morphological traits associated with soil pH and resource availability of Cerradão and SDF woody species. Leaf functional traits were measured for 25 Cerradão and 27 SDF species. We performed between-site comparisons with either all species pooled using phylogenetically independent contrasts or species shared between Cerradão and SDF, as well as congeneric pairs. We found higher specific leaf area and leaf nitrogen, potassium, calcium and sulfur concentrations for SDF species. We did not find higher concentrations for leaf phosphorus and manganese (Mn) for SDF species, despite a higher concentration of these nutrients in SDF soil. Cerradão plants had higher leaf iron (Fe), Mn and aluminium (Al) concentrations. For most of the traits assessed, variance was higher among species and genera than between sites. Nutrients with greater availability in the SDF soil did not invariably exhibit higher concentrations in the leaves of SDF species, indicating that these were not limiting for plant productivity. Higher concentrations in the leaves of Cerradão species for Al, Fe and Mn are probably a consequence of lower soil pH, which increases the availability of these elements. In spite of the differences in belowground resources and the divergence for some traits between Cerradão and SDF, our results show high diversity in leaf functional traits within communities and a similarity of leaf functional traits in closely related species in the contrasting habitats. Besides, we surmise that soil pH is an important factor affecting Cerradão and SDF species distribution, excluding SDF species from more acidic soils, because of the toxic effects of Al, and possibly also Mn and Fe.     

Using intraspecific variation of functional traits and environmental factors to understand the formation of nestedness patterns of a local forest community

从功能性状的种内变异和环境因子的角度理解局域森林群落嵌套格局的成因     

Together but different: co-occurring dune plant species differ in their water- and nitrogen-use strategies

Stress factors may severely constrain the range of plant physiological responses in harsh environments. Convergence of traits is expected in coastal dunes because of environmental filtering imposed by severe abiotic factors. However, the wide range of morphological and phenological traits exhibited by coexisting dune species suggests considerable variation in functional traits. We hypothesized that the constraints imposed by structural traits ought to translate into physiological differences. Five dominant species with different morphological traits, but coexisting in a homogeneous dune area in Northwest Spain, were selected for study. Soil characteristics and leaf functional traits were measured in April, June and November 2008. Integrated water-use efficiency (assessed by C isotope discrimination) and N acquisition and use strategies (estimated by N isotope composition) varied significantly among species and the differences changed over time. Species differences in specific leaf area, relative water content, leaf N and C:N ratio, also varied over time. The species differed in stomatal density but not in soil characteristics, with the exception of pH. Species differences in functional traits related to the use of resources suggest species niche segregation. Species-specific temporal effects on the use of these resources support temporal niche differentiation. Somewhat in contrast to the findings of previous studies on harsh environments, this study revealed a considerable level of functional diversity and complexity, suggesting that dune plant species have evolved species-specific strategies to survive by partitioning growth-limiting resources.     

Effect of nitrite concentration and pH on most probable number enumerations of non-growing Nitrobacter spp.

Abstract Enumerations of nitrite-oxidizing bacteria in soil samples by a Most Probable Number technique, often showed relatively high cell numbers at a low nitrite concentration compared with the numbers of ammonium-oxidizing bacteria. It was hypothesized that the high numbers enumerated at low nitrite concentration would represent non-growing or organotrophically growing cells of nitrite-oxidizing species. In this paper, the sensitivity of non-growing Nitrobacter species to high nitrite concentrations as well as to low pH was examined. Different Nitrobacter species were pre-cultured at 0.5 mM nitrite. Non-growing cells differing in age were enumerated at different nitrite concentrations and pH values. The incubation period lasted for 5 months at 20°C. However, during the incubation periods of the older non-growing cells, it appeared that a period of 5 months might have been too short for reaching constant numbers. Early stationary cells of all species that were studied appeared not to be affected by high nitrite concentrations or low pH. Eight- and 18-month-old non-growing cells of Nitrobacter hamburgensis were also insensitive to 5 mM nitrite. The numbers of 8- and 18-month-old resting cells of N. vulgaris were only repressed by a combination of 5 mM nitrite and a low pH. Eight-month-old non-growing cells of N. winogradskyi were sensitive to 5 mM irrespective of pH, but 18-month-old cells only to 5 mM nitrate at low pH. The numbers of 8- and 18-month-old resting cells of N. winogradskyi serotype agilis were repressed by low pH rather than high nitrite concentration. Hence, it was concluded that the large differences in numbers of nitrite-oxidizing bacteria obtained with low and high nitrite concentrations in the incubation medium, was not likely to be due to the presence of non-growing Nitrobacter species in soil samples, but rather to the existence of organotrophically growing Nitrobacter cells.     

长白山阔叶树种木质部环孔和散孔结构特征的分化导致其水力学性状的显著差异

木质部的解剖结构特征对树木水分传输功能有重要的影响,阔叶树种木质部环孔和散孔结构特征的分化,很可能导致两个功能类群在水力学结构上存在显著差异,但是有关两个功能类群间细致的水力学性状的对比研究还较少,二者整枝水平的导水率及纹孔水平的细致结构差异尚未见报道.本试验以长白山阔叶红松林常见的3个环孔材和4个散孔材乔木树种为研究对象,对比了两个功能类群树种的整枝导水率(k_shoot)、枝条木质部栓塞脆弱性(p_50)等重要水力学相关生理功能特征,并分析了两个功能类群间的木质部组织水平和纹孔水平上的解剖结构特征差异.结果表明:与茎段导水率差异一致,环孔材树种的整枝导水率也显著高于散孔材,但枝条木质部气穴化抵抗力显著弱于散孔材,二者的差异反映了整枝水平上木质部导水效率和安全性之间的权衡关系,与两个功能类群的水力学生理特征存在显著差异一致,二者在最大导管长度、导管直径、纹孔开口面积、纹孔开口比例等光学和扫描电镜观测解剖结构特征上都存在显著差异;木质部解剖特征(组织水平、纹孔水平)和k_shoot、p_50等生理特征间,以及木质部不同解剖特征之间存在显著的相关,且两个功能类群遵循相同的规律,反映了木质部结构对水分传输功能的重要影响,而导水率和气穴化抵抗力对木质部对立的结构要求,体现了树木水分传输系统构建的生物物理局限性.     

A confocal technique applicable to studies of cellular pH-related signaling in plants

pH may act as a crucial signal In both animal and plant cells. It Is very difficult to monitor pH signals and this has largely hindered progress in the investigation of pH signaling, particularly systematic pH signaling. Here, we report the development of a confocal technique to monitor leaf apoplastic pH in intact plants, which Is particularly suitable for the studies on root to shoot signaling. A variety of different pH indicators and plant species were tested. It was found that different pH indicators, for example, 2',7'-Bis-(2-carboxyethyl)-5-(and-6)-carboxyfluoresce (BCECF), SNARF-4F 5-(and-6). carboxylic acid (SNARF) and DM-NERF (NERF), were of different properties, and to successfully monitor pH at a sub-cellular level, the comparability between the pH indicator and plant species must be involved according to their suitable pH range and loading characteristics. The loading characteristics of different pH indicators differ with different plant species, cell types and their developing stages. No matter what methods were adopted, BCECF and SNARF could not be loaded specifically in the leaf apoplast in sunflower, tomato, and Comelina communis L. In contrast, regardless of the methods adopted, NERF could be loaded efficiently and specifically in the leaf apoplast in C. communis, but not in other plants. In Co comrnunis, the determination coefficient for In vitro and in situ calibration of NERF was very high, which was respectively 0.9951 and 0.991 6, and therefore, the adoption of NERF together with C. communis could construct an ideal experimental system that Is suitable for the investigation of pH systematic signaling. Ratio image analysis demonstrated that the leaf apoplastic pH was about 5.5 in non-stressed conditions, and water deficit could trigger an increase in pH by about half a pH unit, which is the first evidence to directly indicate that pH Is able to act as a systematic signal under water deficit conditions.     

Elevated temperature may reduce functional but not taxonomic diversity of fungal assemblages on decomposing leaf litter in streams

Mounting evidence points to a linkage between biodiversity and ecosystem functioning (B-EF). Global drivers, such as warming and nutrient enrichment, can alter species richness and composition of aquatic fungal assemblages associated with leaf-litter decomposition, a key ecosystem process in headwater streams. However, effects of biodiversity changes on ecosystem functions might be countered by the presumed high functional redundancy of fungal species. Here, we examined how environmental variables and leaf-litter traits (based on leaf chemistry) affect taxonomic and functional α- and β-diversity of fungal decomposers. We analysed taxonomic diversity (DNA-fingerprinting profiles) and functional diversity (community-level physiological profiles) of fungal communities in four leaf-litter species from four subregions differing in stream-water characteristics and riparian vegetation. We hypothesized that increasing stream-water temperature and nutrients would alter taxonomic diversity more than functional diversity due to the functional redundancy among aquatic fungi. Contrary to our expectations, fungal taxonomic diversity varied little with stream-water characteristics across subregions, and instead taxon replacement occurred. Overall taxonomic β-diversity was fourfold higher than functional diversity, suggesting a high degree of functional redundancy among aquatic fungi. Elevated temperature appeared to boost assemblage uniqueness by increasing β-diversity while the increase in nutrient concentrations appeared to homogenize fungal assemblages. Functional richness showed a negative relationship with temperature. Nonetheless, a positive relationship between leaf-litter decomposition and functional richness suggests higher carbon use efficiency of fungal communities in cold waters.