前列腺素D2与睡眠调节

前列腺素D2（PGD2）是目前已知最有潜力的内源性促睡眠物质之一。鼠脑脊液（CSF）中PGD2浓度与睡眠－觉醒周期一致,呈现节律性改变,并且随睡眠剥夺期间嗜睡倾向增加而增加,催化PGH2转变为PGD2的特生酶有两种：Lipocalin型前列腺素D合成酶（L－PGDS）和脾型PGDS。L－PGDS主要在大脑蛛网膜和脉络丛产生,并分泌入CSF。L－PGDS和PGD2在脑室系统、蛛网膜下腔及细胞外间隙中循环,循环中的PGD2可与前脑头端基底腹内侧面的化学感受器中的前列腺素D2受体（DPR）相互作用,通过活化具有腺苷A2a受体的元以产生促进睡眠的信号。PGD2敏感区内DPR的活化可导致腹侧视前区（VLPO）内神经元的活化,其可通过抑制结节乳头核（TMN）而促进睡眠。相反,PGE2在维持大脑清醒状态下起主要作用。PGD2和PGE2的平衡对正常睡眠－觉醒周期的维持十分关键。     

NKG2D及其配体研究进展

NKG2D在NK细胞以及T细胞参与的免疫过程中占有重要的地位。本文介绍了NKG2D受体复合体的组成、结构、功能及表达调控;同时介绍了NKG2D配体的分类,病原体感染对其表达的诱导作用以及异常NKG2D配体的表型及功能,最后简要分析了NKG2D免疫途径在肿瘤免疫和治疗方面的应用前景。     

Disaccharide conformational maps: 3D contours or 2D plots?

The potential energy surfaces of several alpha-(1-->3)- and beta-(1-->4)-linked disaccharides were obtained and plotted in terms of energy versus psi glycosidic angle. These plots were compared to those obtained previously in the way of the usual 3D contour maps, which relate the energy with the two glycosidic angles (phi and psi). Given the usually small variations of the phi angle in the low-energy regions (at least using MM3), both kinds of graphs lead to similar conclusions concerning flexibility measurements by two different methods and assessment of the effects of sulfation and/or hydroxyl group orientation. Only second-order effects were found with some sulfated disaccharides, not changing the general conclusions. The computational efforts required to produce those plots are smaller, and the plots are easier to interpret. Besides, the conversion of a 3D map into a 2D plot leaves the possibility of constructing 3D maps of carbohydrates including a second variable different to phi, e.g., the second psi angle of a trisaccharide or the omega angle of a 6-linked disaccharide.     

Pharmacological Characterization of Mammalian D1 and D2 Dopamine Receptors Expressed in Drosophila Schneider‐2 Cells

Abstract

Mammalian D₁ and D₂ dopamine receptors were stably expressed in Drosophila Schneider‐2 (S2) cells and screened for their pharmacological properties. Saturable, dose‐dependent, high affinity binding of the D₁‐selective antagonist [³H]SCH‐23390 was detected only in membranes from S2 cells induced to express rat dopamine D₁ receptors, while saturable, dose‐dependent, high affinity binding of the D₂‐selective antagonist [³H]methylspiperone was detected only in membranes from S2 cells induced to express rat dopamine D₂ receptors. No specific binding of either radioligand could be detected in membranes isolated from uninduced or untransfected S2 cells. Both dopamine D₁ and D₂ receptor subtypes displayed the appropriate stereoselective binding of enantiomers of the nonselective antagonist butaclamol. Each receptor subtype also displayed the appropriate agonist stereoselectivities. The dopamine D₁ receptor bound the (+)‐enantiomer of the D₁‐selective agonist SKF38393 with higher affinity than the (?)‐enantiomer, while the dopamine D₂ receptor bound the (?)‐enantiomer of the D₂‐selective agonist norpropylapomorphine with higher affinity than the (+)‐enantiomer. At both receptor subtypes, dopamine binding was best characterized as occurring to a single low affinity site. In addition, the low affinity dopamine binding was also found to be insensitive to GTPγS and magnesium ions. Overall, the pharmacological profiles of mammalian dopamine D₁ and D₂ receptors expressed in Drosophila S2 cells is comparable to those observed for these same receptors when they are expressed in mammalian cell lines. A notable distinction is that there is no evidence for the coupling of insect G proteins to mammalian dopamine receptors. These results suggest that the S2 cell insect G system may provide a convenient source of pharmacologically active mammalian D₁ and D₂ dopamine receptors free of promiscuous G protein contaminants.     

D1/D2/Cytb-559复合物的共振拉曼光谱

光系统Ⅱ（ＰＳⅡ）反应中心Ｄ１／Ｄ２／Ｃｙｔｂ－５５９ 复合物在４８８ ｎｍ 处激发的共振拉曼光谱显示４ 个主要谱带,其峰位分别在１５３２（υ１）、１１６５（υ２）、１０１０（υ３）和９７０（υ４） ｃｍ － １处,表明ＰＳⅡ反应中心结合的β－胡萝卜素分子是全反式构型。Ｄ１／Ｄ２／Ｃｙｔｂ－５５９ 复合物的色素抽提液的拉曼光谱也显示４ 个主要的拉曼峰,其中υ４ 谱带的强度急剧下降,说明ＰＳⅡ反应中心内部结合的β－胡萝卜素分子与抽提液中自由的β－胡萝卜素分子的构象不同,而与光合细菌反应中心内部的类胡萝卜素分子的构象相似,其共轭多烯链的平面也处于扭曲状态     

维生素 D 与2型糖尿病的关系

维生素D一直被称为抗佝偻病因子或日光维生素,如今,维生素D缺乏已经成为全球性的健康问题。目前越来越多的证据表明维生素D除了参与骨代谢外,在2型糖尿病的发生及发展的几条关键通路上发挥重要的调节作用,但基于人群的研究得到的结论并不一致。本文将重点探讨维生素D与T2DM的关系。     

前列腺素D2及其受体与哺乳动物生殖

前列腺素D2(PGD2)是前列腺素(PGs)家族成员之一,广泛分布于各种哺乳动物组织中,并发挥多种生理功能。PGD,可以促进睡眠、诱导过敏反应、抑制血小板凝集及松弛平滑肌等,并且在生殖系统中起重要作用。机体中存在生化和免疫功能截然不同的两类前列腺素D合成酶(PGDs)：脑型PGDS(L-PGDS)和生血型PGDS(hPGDS)。生殖系统中,L-PGDS主要存在于雄性生殖道,可能在睾丸发育、精子发生、精子成熟以及血一睾和血一附睾屏障等方面发挥重要作用。hPGDS在妊娠时期的子宫内膜和胚胎滋养层中表达,由其产生的PGD2可能通过DP和CRTH2两种受体来维持妊娠。此外,PGD2还可能与女性不孕以及精子在雌性生殖道内的运输等有关。     

多巴胺D1和D2受体拮抗剂对针刺镇痛的增强

在兔K~+透入测痛模型上,应用高选择性的D_1或D_2受体拮抗剂、观察其对针刺镇痛的影响。结果表明,iv.D_2受体拮抗剂氟哌啶醇和氯氮平加强针刺镇痛,且与剂量有关。icv.D_2受体拮抗剂domperidone和舒必利及D_1受体拮抗剂SCH23390,亦能加强针刺镇痛。本文对D_1和D_2受体拮抗剂在针刺镇痛中的作用进行了讨论。     

辐照外源DNA导入番茄研究——D1、D2代分析

辐照外源DNA导入番茄后,供体叶形不但在D1代上得到表达,而且能遗传到D2代。并且在D1代,其果形、果实大小以及Vc含量等都有明显变化。为验证该技术的效果和重复性,又进行了第二期辐照外源DNA导入番茄试验,发现在D1代幼苗中,供体的显性基因正常叶形,仍有一定的几率在受体中得到表达。结果与第一期试验相同。野生种番茄DNA龙辐照作供体导入后,也获得了野生种叶形在受体中得到表达的D1代植株,说明辐照外源DNA导入番茄技术效果好,重复性好,便于进行远缘杂交。     

D1／D2／Cyt—559复合物的共振拉曼光谱

光系统Ⅱ（ＰＳⅡ）反应中心Ｄ１／Ｄ２／Ｃｙｔｂ－５５９复合物在４８８ｎｍ处激发的共振拉曼谱显示４个主要谱带,其峰位分别在１５３２（ｖｌ）１１６５（ｖ２）１０１０（ｖ３）和９７０（ｖ４）ｃｍ＾－１处,表明ＰＳⅡ反应中心结合的β－胡萝卜素分子是全反式构型。Ｄ１／Ｄ２／Ｃｙｔｂ－５５９复合物在色素抽提液的拉曼光谱也显示４个主要的拉曼峰,其中ｖ４谱带的强度急剧下降,说明ＰＳⅡ反应中心内部结合的β－胡萝卜素     

β2-Adrenergic regulation of prostaglandin D2 receptor in rabbit platelets

[³H]Prostaglandin D₂ binding to rabbit platelets was increased by about 150% in the presence of β-adrenoceptor agonist, isoproterenol. The isoproterenol-induced potentiation of the [³H]prostaglandin D₂ binding gave a bell-shaped dose-response relationship (maximum response at 3·10⁻⁸ M) in a stereospecific manner. Similar and moderate potentiation was obtained with terbutaline. On the other hand, β-adrenoceptor antagonists such as alprenolol, propranolol and butoxamine (β₂-specific) had no potentiating effect on [³H]prostaglandin D₂ binding; rather, they abolished the isoproterenol-induced increase of [³H]prostaglandin D₂ binding. The β₁-specific antagonist, metoprolol, did not have any effect. Rabbit platelets were found to possess one [³H]prostaglandin D₂ binding site (K_d = 6·10⁻⁷ M, B_max = 787 fmol/mg protein). In the presence of isoproterenol at 3·10⁻⁸ M, B_max was increased with unaltering K_d value. Isoproterenol did not increase [³H]prostaglandin E₁, [³H]prostaglandin E₂ and [³H]prostaglandin F_2α bindings to platelets. The potential effect of isoproterenol was mimicked by forskolin, theophylline, dibutyryl cyclic AMP, prostaglandin E₁ and prostaglandin I₂, but it was abolished by 2′, 5′-dideoxyadenosine, an inhibitor of adenylate cyclase, indicating that elevated level of cyclic AMP may be available for the induction of the increase of [³H]prostaglandin D₂ binding. Prostaglandin D₂-induced cyclic AMP synthesis and antiaggregation activity were also augmented in the presence of isoproterenol. These results suggest a β₂-adrenoceptor-mediated cyclic AMP-dependent mechanism for the regulation of prostaglandin D₂ receptor binding in rabbit platelets.     

A QM protein–ligand investigation of antipsychotic drugs with the dopamine D2 Receptor (D2R)

The dopamine D2 Receptor (D2R) is a member of the G-Protein-Coupled Receptor family and plays a critical role in neurotransmission activities in the human brain. Dysfunction in dopamine receptor signaling may lead to mental health illnesses such as schizophrenia and Parkinson’s disease. D2R is the target protein of the commonly used antipsychotic drugs such as risperidone, clozapine, aripiprazole, olanzapine, ziprasidone, and quetiapine. Due to their significant side effects and non-selective profiles, the discovery of novel drugs has become a challenge for researchers working in this field. Recently, our group has focused on the interactions of these drug molecules in the active site of the D2R using different in silico approaches. We here compare the performances of different approaches in estimating the drug binding affinities using quantum chemical approaches. Conformations of drug molecules (ligands) at the binding site of the D2R taken from the preliminary docking studies and molecular dynamics simulations were used to generate protein–ligand interaction models. In a first approach, the BSSE-corrected interaction energies of the ligands with the most critical amino acid Asp114 and with the other amino acids closest to ligands in the binding cavity were calculated separately by density functional theory method in implicit water environment at the M06-2X/6-31 g(d,p) level of the theory. In a second approach, ligand binding affinities were calculated by taking into consideration not only the interaction energies but also deformation and desolvation energies of ligands with surrounding amino acid residues, in a radius of 5 Å of the protein-bound ligand. The quantum mechanically obtained results were compared with the experimentally obtained binding affinity values. We concluded that although H-bond interactions of ligands with Asp114 are the most dominant interaction in the binding site, if van der Waals and steric interactions of ligands which have cumulative effect on the ligand binding are not included in the calculations, the interaction energies are overestimated.     

Analysis of forearm rotational motion using biplane fluoroscopic intensity-based 2D–3D matching

Measuring three-dimensional (3D) forearm rotational motion is difficult. We aimed to develop and validate a new method for analyzing 3D forearm rotational motion. We proposed biplane fluoroscopic intensity-based 2D–3D matching, which employs automatic registration processing using the evolutionary optimization strategy. Biplane fluoroscopy was conducted for forearm rotation at 12.5 frames per second along with computed tomography (CT) at one static position. An arm phantom was embedded with eight stainless steel spheres (diameter, 1.5 mm), and forearm rotational motion measurements using the proposed method were compared with those using radiostereometric analysis, which is considered the ground truth. As for the time resolution analysis, we measured radiohumeral joint motion in a patient with posterolateral rotatory instability and compared the 2D–3D matching method with the simulated multiple CT method, which uses CTs at multiple positions and interpolates between the positions. Rotation errors of the radius and ulna between these two methods were 0.31 ± 0.35° and 0.32 ± 0.33°, respectively, translation errors were 0.43 ± 0.35 mm and 0.29 ± 0.25 mm, respectively. Although the 2D–3D method could detect joint dislocation, the multiple CT method could not detect quick motion during joint dislocation. The proposed method enabled high temporal- and spatial-resolution motion analyses with low radiation exposure. Moreover, it enabled the detection of a sudden motion, such as joint dislocation, and may contribute to 3D motion analysis, including joint dislocation, which currently cannot be analyzed using conventional methods.     

ExonVisualiser – application for visualization exon units in 2D and 3D protein structures

The web application oriented on identification and visualization of protein regions encoded by exons is presented. The Exon Visualiser can be used for visualisation on different levels of protein structure: at the primary (sequence) level and secondary structures level, as well as at the level of tertiary protein structure. The programme is suitable for processing data for all genes which have protein expressions deposited in the PDB database. The procedure steps implemented in the application: I) loading exons sequences and theirs coordinates from GenBank file as well as protein sequences: CDS from GenBank and aminoacid sequence from PDB II) consensus sequence creation (comparing amino acid sequences form PDB file with the CDS sequence from GenBank file) III) matching exon coordinates IV) visualisation in 2D and 3D protein structures. Presented web-tool among others provides the color-coded graphical display of protein sequences and chains in three dimensional protein structures which are correlated with the corresponding exons.

Availability

http://149.156.12.53/ExonVisualiser/     

2D与3D景观指数测定山区植被景观格局变化对比分析

植被和土地覆盖变化是环境变化的一个重要因素,同时也是引起景观和生态系统变化的重要原因。景观指数是定量分析植被和土地覆盖变化的重要研究方法之一。以滇西北高山峡谷区为案例区,比较分析传统2D景观指数和3D景观指数进行植被变化定量测定的差异。研究主要选取了基于斑块面积和周长几个常用指数来进行比较分析。研究结果表明在斑块层次上,除了分维数指数,其他指数的三维方法计算值显著地高于二维方法计算值;在类型层次上,三维的类型面积指数、平均斑块面积指数、平均最小邻近距离指数测定的变化值显著大于二维的相应指数测定变化值,但是二维和三维平均形状指数和分维指数测定的植被斑块的平均形状变化结果没有显著差异;在景观层次,只有三维的平均斑块面积和最小邻近距离指数测定的变化结果显著高于二维的平均面积和最小邻近距离指数测定的变化结果,其它指数如形状指数、分维指数、多样性指数和均一度指数等测定出两个不同时期的植被图格局变化结果均无显著差异,主要由于这些指数是采用面积和周长的对数或者比值计算得出,从而缩小了斑块表面面积与平面面积,表面周长与平面周长之间的差异。总体而言,利用二维景观指数在进行定量分析山区植被格局变化时,往往低估了其类型面积、平均斑块面积、斑块邻近距离等指数变化量,而三维景观指数得到相对较精确的变化值。     

NKG2D免疫受体及其配体的作用

受到感染或损伤的细胞通过中间受体将信号传导至机体的免疫系统,NKG2D即是这样一种典型的具有较高免疫原性的免疫受体,它的主要作用是传导受损伤细胞产生的信号,诱导机体产生免疫应答。该文总结了近期关于NKG2D和其配体的多样性,以及NKG2D和其配体在信号传导,刺激免疫细胞产生,肿瘤细胞的监督和疾病预防方面的新发现。     

9-Deoxy-Δ9-prostaglandin D2, a prostaglandin D2 derivative with potent antineoplastic and weak smooth muscle-contracting activities

We have recently described a potential antineoplastic effect of prostaglandin D₂ (PGD₂) (Fukushima, M., Kato, T., Ueda, R., Ota, K., Narumiya, S., and Hayaishi, O. (1982) Biochem. Biophys. Res. Commun. $\text{105}$, 956–964). In the present study three analogues of PGD₂ were examined for their antineoplastic and other biological activities. 9-Deoxy-Δ⁹-PGD₂, a dehydrate of PGD₂, had about 3 times stronger growth inhibitory effect than PGD₂ on L1210 leukemia cultured cells. The IC₅₀ value of this compound was 0.5–1.0 μg/ml (2μ$\text{M}$). In contrast to PGD₂, this compound lacked a contracting activity on colonic smooth muscle and caused less diarrhea. The antiaggregatory action of the compound on blood platelet was about 10 times weaker than PGD₂. The growth inhibitory activity was also observed with cyclopentenone itself; the IC₅₀ value was about 100 μM. On the other hand, BW245C which had the antiaggregatory activity comparable with PGD₂ showed no growth inhibition. These results suggest that cyclopentenone structure is an essential moiety of prostaglandin derivaties for cell growth inhibition and that the growth inhibitory activity could be dissociated from other biological activities of prostaglandins.     

嗜麦芽寡养单胞菌D2株2套Ⅱ型分泌系统

嗜麦芽寡养单胞菌D2株经前期研究发现有2套Ⅱ型分泌系统（T2SS）,根据嗜麦芽寡养单胞菌K279a、R551—3、JV3、D457的T2SS基因簇序列,以及D2株的部分测序结果设计引物,采用基因移步法逐一扩增2套T2SS基因序列,产物连接至T载体,经酶切鉴定后测序、拼接。发现有22个完整的开放多码框架（ORF）,比对分析后发现T2SSl的基因簇与同种属细菌相应基因簇序列同源性均在80％以上,对应氨基酸序列同源性均能达到97％以上,而T2SS2基因簇与K279a、R551—3对应基因序列和氨基酸序列的同源性均不及T2SS1高。2套T2SS的GspE、F、I基因同源性在50％以上,其他对应基因同源性在35％～68％之间不等,氨基酸序列同源性则为15％～61％。2套他ss与铜绿假单胞菌PA01的同源性高于不同科的小肠结肠炎耶尔森菌。T2SS的序列测定及同源性分析为进一步研究细菌蛋白分泌机制奠定基础。     

Structure-guided development of dual β2 adrenergic/dopamine D2 receptor agonists

Aiming to discover dual-acting β₂ adrenergic/dopamine D₂ receptor ligands, a structure-guided approach for the evolution of GPCR agonists that address multiple targets was elaborated. Starting from GPCR crystal structures, we describe the design, synthesis and biological investigation of a defined set of compounds leading to the identification of the benzoxazinone (R)-3, which shows agonist properties at the adrenergic β₂ receptor and substantial G protein-promoted activation at the D₂ receptor. This directed approach yielded molecular probes with tuned dual activity. The congener desOH-3 devoid of the benzylic hydroxyl function was shown to be a β₂ adrenergic antagonist/D₂ receptor agonist with K_i values in the low nanomolar range. The compounds may serve as a promising starting point for the investigation and treatment of neurological disorders.