Structure and dynamics of an amphibian metacommunity in two regions

1. The concept of metacommunity is based on the hypothesis that species occurrence depends on species dynamics and interactions on local and regional scales via the movements of individuals between localities. Metacommunity approaches are currently being applied to pond breeding taxa such as amphibians. 2. Given that animal movement is also influenced by the physical quality of the matrix to be crossed to reach a breeding habitat and by the affinity of the species for specific terrestrial habitats, matrix characteristics may enhance or hinder dispersal success. These characteristics would, in turn, affect the composition of larval assemblages at local level and, consequently, determine metacommunity structure and dynamics. 3. Here we compared the structures and dynamics of two metacommunities with the same pool of anurans along similar freshwater gradients in two regions that are well differentiated in terms of their respective terrestrial matrix. 4. Abundance of tadpole species and species assemblage in the two regions were determined principally by local processes (at pond level); however, the structure and dynamics of the communities differed. In one region species abundance was explained in part by landscape factors and consequently showed lower co-occurrence and lower colonization rates (species sorting models) indicating that terrestrial habitat could restrict animal movements, whereas in the other region higher co-occurrence and higher colonization rates (mass effect models) indicated low dispersal limitations.     

Evaluating the role of regional and local processes in structuring a larval trematode metacommunity of Helisoma trivolvis

Metacommunity theory has advanced our understanding of how local and regional processes affect the structure of ecological communities. While parasites have largely been omitted from metacommunity research, parasite communities can provide the large sample sizes and discrete boundaries often required for evaluating metacommunity patterns. Here, we used assemblages of flatworm parasites that infect freshwater snails (Helisoma trivolvis) to evaluate three questions: 1) what factors affect individual host infections within ponds? 2) Is the parasite metacommunity structured among ponds? And 3) what is the relative role of local versus regional processes in determining metacommunity structure and species richness among ponds? We examined 10 821 snails from 96 sites in five park complexes in the San Francisco Bay area, California, and found 953 infections from six parasite groups. At the within‐pond level, infection status of host snails correlated positively with individual snail size and pond infection prevalence for all six parasite groups. Using an ordination method to test for metacommunity structure, we found that the parasite metacommunity was organized in a non‐random pattern with species responding individually along an environmental gradient. Based on a model selection approach involving local and regional predictors, parasite species richness and metacommunity structure correlated with both local abiotic (pH and total dissolved nitrogen) and biotic (non‐host mollusk density, and H. trivolvis biomass) factors, with little support for regional predictors. Overall, this trematode metacommunity most closely followed the predictions from the species sorting or mass effects metacommunity paradigm, in which community diversity is filtered by local site characteristics.     

Global patterns in the metacommunity structuring of lake macrophytes: regional variations and driving factors

Oecologia - We studied community–environment relationships of lake macrophytes at two metacommunity scales using data from 16 regions across the world. More specifically, we examined (a)...     

Community monopolization: local adaptation enhances priority effects in an evolving metacommunity

The diversity and composition of biological communities might often depend on colonization history because early colonists can exclude future colonists through a priority effect. These priority effects, which have been observed across a wide variety of ecosystems, often arise because early colonists have sufficient time to use available resources efficiently and subsequently withhold them from invaders. Here, we explore the extent to which rapid local adaptive evolution contributes to the pervasiveness of these priority effects. Using an individual-based simulation, we show that early colonization allows the descendants of colonists to adapt to novel conditions and reduce the establishment success of an initially ecologically equivalent competing species. Our model predicts that slight differences in colonization timing and adaptive capacity between species can substantially alter the dynamics and diversity of communities. We also show that priority effects and gene flow can generate a novel mechanism for the expansion and retraction of species distributions in a metacommunity. Our results suggest that local adaptation combined with stochastic colonization events can obscure direct relationships between species distributions and environmental gradients. Given the increasing recognition of rapid, microgeographic evolution in natural populations, we expect that evolutionary priority effects could affect the structure and dynamics of many natural metacommunities.     

A process‐based metacommunity framework linking local and regional scale community ecology

The metacommunity concept has the potential to integrate local and regional dynamics within a general community ecology framework. To this end, the concept must move beyond the discrete archetypes that have largely defined it (e.g. neutral vs. species sorting) and better incorporate local scale species interactions and coexistence mechanisms. Here, we present a fundamental reconception of the framework that explicitly links local coexistence theory to the spatial processes inherent to metacommunity theory, allowing for a continuous range of competitive community dynamics. These dynamics emerge from the three underlying processes that shape ecological communities: (1) density‐independent responses to abiotic conditions, (2) density‐dependent biotic interactions and (3) dispersal. Stochasticity is incorporated in the demographic realisation of each of these processes. We formalise this framework using a simulation model that explores a wide range of competitive metacommunity dynamics by varying the strength of the underlying processes. Using this model and framework, we show how existing theories, including the traditional metacommunity archetypes, are linked by this common set of processes. We then use the model to generate new hypotheses about how the three processes combine to interactively shape diversity, functioning and stability within metacommunities.     

A metabolic view of amphibian local community structure: the role of activation energy

In the context of the metabolic theory of ecology (MTE), the activation energy (E) reflects the temperature dependence of metabolism and organism performance in different activities, such as calling behavior. In this contribution we test the role of temperature in affecting local amphibian community structure, particularly the number of species engaged in calling behavior across a temperature gradient. Toward this aim, we compiled phenological calling activity for 52 Neotropical anuran communities. For each community we estimated the activation energy of calling behavior (E), finding values significantly higher than previous reports. A wide range of methodological issues with the potential to produce overestimated E‐values were shown to have no significant effect on reported E‐values, supporting a biological interpretation of their high values and of geographic trends. Further, a path analysis related variation in E among communities with communities’ phylogenetic structure, local environmental conditions, richness, and seasonality. The decrease of activation energy at higher latitudes and less productive environments suggests that amphibians’ activity could become more dependent of internal individuals’ resources once external sources are reduced. The increase in phylogenetic attraction with latitude points to a rise in the role of niche conservatism and community filtering operating over conserved traits. Finally, flexibility in activation energy related to amphibians’ calling could be an important and poorly recognized determinant of their thermal dependence. The temporal structuring of amphians’ communities was related here with the interplay between ecological and evolutionary processes operating at different scales. Our results support the view of activation energy as an important parameter of biodiversity organization, which unravels the effects of ecological and evolutionary processes on biodiversity structure and function.     

Environmental influences on local amphibian diversity: the role of floods on river basins

We tested two hypotheses about boundary units and seven about environmental control of species diversity in order to explain geographical trends in the richness of amphibian species in the Mediterranean watershed of the southern coast of the Iberian Peninsula. The number of amphibian species tends to decrease from west to east. The longitudinal trend in the richness of amphibian species actually occurs on passing from one basin to another, but there is not any longitudinal trend within the basins. Multivariate analyses confirmed that the disturbances of episodic river-basin floodings were the principal factor which controls the richness of amphibian species. They explained 94.8% of the observed variations in the richness of amphibian species in this area, according to the intermediate disturbance hypothesis.We propose hydrographic basins as suitable geographical units for further biogeographical analysis and for considering the role of disturbances produced by floods in the environmental control of species diversity.     

Disentangling the effects of local and regional processes on biodiversity patterns through taxon‐contingent metacommunity network analysis

Metacommunity theory, which has gained a central position in ecology, accounts for the role of migration in patterns of diversity among communities at different scales. Community isolation has a main role in this theory, but is difficult to estimate empirically, partly due to the taxon‐dependent nature of dispersal. Landscapes could be perceived as either fragmented or connected for organisms with contrasting dispersal abilities. Indeed, the dispersal ability of a taxon, and the spatial scale at which eco‐evolutionary processes shape local diversity, determine a taxon‐dependent metacommunity network. In this paper, we introduce a methodology using graph theory to define this taxon‐dependent metacommunity network and then to estimate the isolation of local communities. We analyzed the relative importance of local conditions versus community isolation as determinants of community richness for 25 taxa inhabiting 18 temporary ponds. Although local factors have been the foci of most previous empirical and theoretical considerations, we demonstrate that the metacommunity network is an equally important contributor to local diversity. We also found that the relative effect of local conditions and the metacommunity network depend on body size and taxon abundance. Local diversity of larger species was more affected by patch isolation, while taxon abundances were associated with positive or negative effects of isolation. Our results provide empirical support for the proposed role of metacommunity networks as determinants of community diversity and show the taxon‐dependent nature of these networks.     

Using functional diversity patterns to explore metacommunity dynamics: a framework for understanding local and regional influences on community structure

The metacommunity concept, describing how local and regional scale processes interact to structure communities, has been successfully applied to patterns of taxonomic diversity. Functional diversity has proved useful for understanding local scale processes, but has less often been applied to understanding regional scale processes. Here, we explore functional diversity patterns within a metacommunity context to help elucidate how local and regional scale processes influence community assembly. We detail how each of the four metacommunity perspectives (species sorting, mass effects, patch dynamics, neutral) predict different patterns of functional beta‐ and alpha‐diversity and spatial structure along two key gradients: dispersal limitation and environmental conditions. We then apply this conceptual model to a case study from alpine tundra plant communities. We sampled species composition in 17 ‘sky islands’ of alpine tundra in the Colorado Rocky Mountains, USA that differed in geographic isolation and area (key factors related to dispersal limitation) and temperature and elevation (key environmental factors). We quantified functional diversity in each site based on specific leaf area, leaf area, stomatal conductance, plant height and chlorophyll content. We found that colder high elevation sites were functionally more similar to each other (decreased functional beta‐diversity) and had lower functional alpha‐diversity. Geographic isolation and area did not influence functional beta‐ or alpha‐diversity. These results suggest a strong role for environmental conditions structuring alpine plant communities, patterns consistent with the species sorting metacommunity perspective. Incorporating functional diversity into metacommunity theory can help elucidate how local and regional factors structure communities and provide a framework for observationally examining the role of metacommunity dynamics in systems where experimental approaches are less tractable.     

Reproductive dynamics of three amphibian species in Mediterranean wetlands: the role of local precipitation and hydrological regimes

1. Although the influence of water availability and precipitation regimes on amphibians has been studied at large scales, whether and how interannual rainfall and hydrological variations affect amphibians dynamics at a local scale have rarely been addressed. In this respect, accounting for variations in species detectability in space and time has also been overlooked. 2. We assessed the effects of rainfall and hydrological variations on the breeding dynamics of three amphibian taxa: Pelodytes punctatus, Hyla meridionalis and Pelophylax spp. in 20 ponds of the Camargue region (southern France) over a 7‐year study period. 3. We used multiple season occupancy models to test the effect of winter–spring rainfall and interannual variations in hydroperiod, mean water depth and drought events on tadpole presence in spring (March–June), a proxy for breeding dynamics. 4. We used an independent survey with spatial replicates (dipnet sweeps) to disentangle the relative contributions of phenology and detectability to the absence of records in a given month. For the three taxa considered, the probability of missing a species when that species was actually present in a pond was most often negligible. Hence, we could consider that multiseason models properly tracked changes in species phenology. 5. Pelodytes punctatus was first detected in March, while the two other taxa appeared later in April. Hyla meridionalis appeared as a mid‐season species with much more synchronous pond occupancy than Pelodytes punctatus. The detection peak of Pelophylax spp. was short and unexpectedly early for this taxon. 6. Seasonal winter–spring rainfall was associated with a decrease in extinction rates and even more strongly with an increase in colonisation rates at individual ponds. 7. Colonisation rate increased following an annual drought and was best modelled as a negative quadratic effect of the variance of pond hydroperiod. Extinction probability was best modelled by a negative quadratic effect of mean water level. Hence, breeding was more stochastic (i) in unpredictable and shallow ponds because of yearly drying up and (ii) in highly predictable and deep ponds, possibly due to the presence of predators such as fish and crayfish. 8. Overall, we show that ponds with intermediate rather than extreme variations in environmental conditions currently correspond to optimal breeding sites. Our study demonstrates that amphibian monitoring coupled with fine‐scale analysis of environmental conditions is necessary to understand species dynamics in the long run and to inform conservation efforts for these species.     

Coexistence of Banksia species in southwestern Australia: the role of regional and local processes

Abstract. 60 of the 75 Banksia species are confined to southwestern Australia where five or six species often coexist. We explored the role of regional species richness, niche differentiation, and habitat specialization in structuring banksia assemblages. The diversity of growth forms and categories of seed production and response to fire were assessed in actual assemblages at 40 sites throughout southwestern Australia. Diversity indices at each site were compared with those from null communities assembled on the basis of the abundance and sociability of taxa in regional species pools. The relationship between local and regional species richness suggests that processes at the scale of 100-m² quadrats limit local richness and therefore coexistence. However, there was no consistent evidence that taxa are differentiated by growth form or regeneration strategy. No particular biological profile makes a banksia adept at coexisting with a wide range of other taxa. Habitat specialization is an important factor contributing to lower local richness than would be predicted from niche differentiation of taxa in regional pools. There is recent empirical evidence of several mechanisms whereby the number of coexisting banksias is increased beyond the limits suggested by simple niche theories. Variability in the fire regime also provides a mechanism for maintaining local species richness because different fires favour recruitment of different taxa.     

The role of common local indicators in regional sustainability assessment

Sustainable development indicators (SDIs) are one of the most frequently used tools to assess sustainable development from an international to a local scale, supporting evaluation and reporting purposes. Indicators can also be particularly useful in addressing the growing need for interaction at regional and local scale in sustainability initiatives and assuring that regional assessments reflect community values, concerns and hopes. The main goal of this research is to develop a conceptual framework for common local sustainability indicators within a regional context, one that is supported by a participative approach and allows interaction between local and regional scales. Other major goals were to design the regional profile on local SDI initiatives and develop a set of common local indicators for the Algarve region – the most southerly region of Portugal. The framework is mainly supported on common strategic goals, objectives, targets, features and resources and on the existing regional and local SDI sets. A regional survey involving all municipalities was conducted to obtain data on local SDI initiatives and the regional profile was defined. By testing the framework in the Algarve, a proposed set of common local indicators was developed and presented in the survey for local authority evaluation. The main findings reveal that, despite the fact that there are still few local SDI initiatives in the Algarve region, the majority of municipalities surveyed fully agree on the importance of developing a minimum common local indicator set for the region. The role and usefulness of the proposed framework were demonstrated in the selection of 20 common local indicators for local–regional scale interaction in the Algarve. Establishing a set of common indicators on a local spatial scale can contribute to providing a coherent assessment framework, by preventing the duplication of effort, allowing local sustainability benchmarking and enhancing the analyses of asymmetries within a region.     

Broad-scale spatial patterns of canopy cover and pond morphology affect the structure of a Neotropical amphibian metacommunity

Spatial and environmental processes influence species composition at distinct scales. Previous studies suggested that the distribution of larval anurans at the landscape-scale is influenced by environmental gradients related to adult breeding site selection, such as pond canopy cover, but not by water chemistry. However, the combined effects of spatial, pond morphology, and water chemistry variables on metacommunity structure of larval anurans have not been analyzed yet. We used a partial redundancy analysis with variation partitioning to analyze the relative influence of pond morphology (e.g., depth, area, and aquatic vegetation), water chemistry, and spatial variables on a tadpole metacommunity from southeastern Brazil. We predict that pond morphology and canopy cover will influence the metacommunity at broad spatial scales, while water chemistry would play a larger role at finer scales. We found that broad-scale spatial patterns of pond canopy cover and pond morphology strongly influenced metacommunity structure, with water chemistry being not significant. Additionally, species composition was spatially autocorrelated at short distances. We suggest that the reproductive behavior of adult anurans is driving tadpole metacommunity dynamics, since pond morphology, but not water chemistry affects breeding site selection by adults. Our results contribute to the understanding of amphibian species diversity in tropical wetlands.     

Bat metacommunity structure on Caribbean islands and the role of endemics

Aim We evaluate characteristics of species ranges (i.e. coherence, species turnover and range boundary clumping) to determine the structure of bat metacommunities and metaensembles from Caribbean islands. We evaluate the effects of endemic species on that structure, and quantify associations between island characteristics and latent environmental gradients that structure these metacommunities and metaensembles. Location Sixty‐five Caribbean islands throughout the Bahamas, Greater Antilles and Lesser Antilles. Methods Metacommunity structure is an emergent property of a set of ecological communities at different sites defined by species distributions across geographic or environmental gradients. We analysed elements of metacommunity structure (coherence, range turnover and range boundary clumping) to determine the best‐fit pattern for metacommunities from all Caribbean islands, as well as from the Bahamas, the Greater Antilles and the Lesser Antilles separately. For each island group, analyses were conducted for all bats and for each of two broadly defined guilds (i.e. carnivores and herbivores). In addition, analyses were conducted for all species and for a subset in which endemic species were removed from the fauna. Spearman rank correlations identified island characteristics (area, elevation, latitude, longitude) that were associated significantly with island scores for ordination axes based on reciprocal averaging. Results Metacommunity structure for all bats and for carnivores was similar for each island group, with Clementsian distributions (i.e. discrete communities with groups of species replacing other groups of species along the gradient) for all islands, the Bahamas and the Lesser Antilles, but with nested distributions for the Greater Antilles. Herbivore distributions were random for the Bahamas, but were Clementsian for all other island groups. Removal of endemic species affected the best‐fit model of metacommunity structure in only 3 of 12 cases. In general, ordination scores for islands were correlated with longitude or latitude, but not with island area or elevation. Main conclusions Characteristics of bat species ranges and associated metacommunity structure were primarily dependent on the number and geographic arrangement of primary sources of colonization, and not on interspecific interactions, species‐specific levels of environmental tolerance, or the physical characteristics of islands. Endemic species did not greatly affect metacommunity structure in Caribbean bats.     

Reproduction of northern spotted owls: The role of local weather and regional climate

We examined associations between annual reproduction and climate for 6 populations of individually marked northern spotted owls (Strix occidentalis caurina) in Washington and Oregon. We used an information-theoretical approach and mixed models to evaluate statistical models representing a priori hypotheses about the effects of weather and climate on reproduction. Reproduction was higher for adult than subadult owls and declined as the proportion of spotted owl territories with barred owl (Strix varia) detections increased. Similar to other spotted owl studies, we found that reproduction was negatively associated with cold, wet winters and nesting seasons at 3 of 6 study areas. In addition, we identified new relationships between reproduction, annual precipitation, storms, and regional climate cycles. For 3 of 6 areas, we found a quadratic relation between precipitation (rain and snow) and reproduction, with the number of young fledged per pair per year declining as precipitation in the previous year deviated from average levels. A meta-analysis conducted across all 6 areas indicated that reproduction at the regional level had a quadratic association with total winter snowfall in the preceding winter and was positively related to temperatures during the previous summer and fall. The amount of annual variation in reproduction accounted for by weather and climate varied widely across the 6 areas (4–79%), whereas variation in weather and climate across owl territories accounted for little of the spatial variation in reproduction (0–4%). Our results suggest that across the range of the species climate factors affecting prey abundance may have a greater effect on reproduction than direct effects of weather on nestlings. © 2011 The Wildlife Society.     

Plant extinction dynamics in an insular metacommunity

Changes in the composition of local communities through time (i.e. species turnover) is a common phenomenon in insular biology. However, the mechanisms promoting variation in species turnover, both among islands and among species, are poorly understood. In an effort to better understand the causes of variation in species turnover, we evaluated the colonization and extinction dynamics of plant populations on 18 small islands off the west coast of Canada. In 1997, we quantified total population sizes of 10 woody angiosperm species. A decade later, we resampled islands to test whether: 1) species turnover occurred, 2) colonization events were offset by extinction events, 2) variation in extinction rates among islands was associated with population sizes, average plant heights, island area, island isolation or each island's exposure to ocean-born disturbances, and 3) variation in extinction rates among species was associated with plant life history traits. Results showed that extinction events outnumbered colonization events, suggesting that the metacommunity is in 'disequilibrium'. Variation in extinction rates among islands was unrelated to island area and isolation. However, extinction rates increased with exposure to ocean-born disturbances and decreased with both initial population sizes and average plant heights. Species with thicker, tougher leaves (i.e. high leaf mass per area) were less prone to extinction than species with thinner, more papery leaves. Overall results indicate that species turnover is common and that it is generated primarily by extinction. Variation in extinction rates appears to result from an interaction between among-island effects (exposure, population size and plant stature) and among-species effects (leaf toughness), suggesting that ocean-born disturbances play a key role in determining metacommunity structure.     

metacom: an R package for the analysis of metacommunity structure

Metacommunity theory is an extension of metapopulation theory with the goal of understanding how ecological communities vary through space and time. One off‐shoot of metacommunity theory deals with understanding how community structure varies along biotic or environmental gradients. The Elements of Metacommunity Structure framework is a three‐tiered analysis of metacommunity structure that enables the user to identify metacommunity properties that arise in site‐by‐species incidence matrices. These properties can then be related to underlying variables that influence species distributions. The EMS framework is now implemented in metacom, an open source R package that allows for the analysis and plotting of metacommunities.     

Spider diversity in cereal fields: comparing factors at local, landscape and regional scales

Aim Factors acting at various scales may affect biodiversity, demanding analyses at multiple spatial scales in order to understand how community richness is determined. Here, we adopted a hierarchical approach to test the contribution of region, landscape heterogeneity, local management (organic vs. conventional) and location within field (edge vs. centre) to the species richness and abundance of spiders in cereals. Location Three regions of western and central Germany: Leine Bergland, Soester Boerde, and Lahn‐Dill Bergland. Methods Forty‐two paired organic and conventional winter wheat fields were compared. Field pairs were located in areas ranging from structurally simple to structurally complex landscapes. In May and June 2003, spiders were sampled using pitfall traps. Linear mixed models were used to determine the relationship of spider diversity and abundance with regional spatial factors and landscape heterogeneity within a 500‐m radius, as well as with local management and within‐field location. Results Within‐field location of the traps and landscape heterogeneity were the best predictors of species richness: more species were found in field edges and in heterogeneous landscapes. Region and local management had no effect on species richness. Activity density was higher in field edges and differed among regions. Main conclusions The diversity of farmland spiders was influenced by differences at two of the spatial scales (edge vs. centre, simple vs. complex landscapes), but not at the two others (field management, region), emphasizing the importance of analyses at a variety of spatial scales for an adequate explanation of patterns in biodiversity. Our study suggests that promoting heterogeneity in land use at landscape scales is one of the keys to promoting spider diversity in agroecosystems.