Estimating the role of three mesopredatory fishes in coral reef food webs at Ningaloo Reef,Western Australia

Within the complex food webs that occur on coral reefs, mesopredatory fish consume small-bodied prey and transfer accumulated biomass to other trophic levels. We estimated biomass, growth and mortality rates of three common mesopredators from Ningaloo Reef in Western Australia to calculate their annual turnover rates and potential contribution to local trophic dynamics. Biomass estimates of the serranid Epinephelus rivulatus (4.46 ± 0.76 g m⁻²) were an order of magnitude greater than two smaller-bodied mesopredatory fishes, Pseudochromis fuscus (0.10 ± 0.03 g m⁻²) and Parapercis clathrata (0.23 ± 0.31 g m⁻²). Growth parameters generated from a von Bertalanffy growth function fitted to size-at-age data, however, indicated that mortality rates for the three mesopredators were similar and that 32–55 % of fish survived each year. Consequently, interspecific differences in annual turnover rates among E. rivulatus (1.9 g m⁻² yr⁻¹), Pa. clathrata (0.10 g m⁻² yr⁻¹) and Ps. fuscus (0.07 g m⁻² yr⁻¹) were an artefact of differences in local biomass estimates. The rapid turnover estimates for E. rivulatus suggest this species is an important conduit of energy within the isolated patch reef habitat where it is typically found, while Ps. fuscus and Pa. clathrata channel smaller amounts of energy from specific habitats in the Ningaloo lagoon. Apparent differences in habitat, diet and turnover rates of the three species examined provide an insight into the different roles these species play in coral reef food webs and suggest that life-history traits allow for variability in the local and spatial contribution of these species at Ningaloo Reef. Moreover, calculating turnover rates of a broader suite of fish species from a range of trophic groups will help better define the role of fishes in coral reef trophic dynamics.

     

Coral-associated bacterial communities on Ningaloo Reef, Western Australia

Coral-associated microbial communities from three coral species (Pocillopora damicornis, Acropora tenuis and Favites abdita) were examined every 3 months (January, March, June, October) over a period of 1 year on Ningaloo Reef, Western Australia. Tissue from corals was collected throughout the year and additional sampling of coral mucus and seawater samples was performed in January. Tissue samples were also obtained in October from P. damicornis coral colonies on Rottnest Island off Perth, 1200 km south of Ningaloo Reef, to provide comparisons between coral-microbial associates in different locations. The community structures of the coral-associated microorganisms were analysed using phylogenetic analysis of 16S rRNA gene clone libraries, which demonstrated highly diverse microbial profiles among all the coral species sampled. Principal component analysis revealed that samples grouped according to time and not species, indicating that coral-microbial associations may be a result of environmental drivers such as oceanographic characteristics, benthic community structure and temperature. Tissue samples from P. damicornis at Rottnest Island revealed similarities in bacteria to the samples at Ningaloo Reef. This study highlights that coral-associated microbial communities are highly diverse; however, the complex interactions that determine the stability of these associations are not necessarily dependent on coral host specificity.     

Macroalgae Inhibits Larval Settlement and Increases Recruit Mortality at Ningaloo Reef,Western Australia

Globally, many coral reefs are degraded and demonstrate reduced coral cover and increased macroalgal abundance. While negative correlations between macroalgae and coral recruitment have commonly been documented, the mechanisms by which macroalgae affects recruitment have received little attention. Here we examined the effect of macroalgae on larval settlement and the growth and survival of coral recruits, in a field experiment over nine months. Exclusion treatments were used to manipulate herbivory and macroalgal biomass, while settlement tiles measured coral settlement and survival. After nine months the volume of macroalgae was up to 40 times greater in the caged treatments than in controls and the settlement of coral larvae on the undersides of tiles within caged plots was 93% lower than in the uncaged treatments. The growth and survival of coral recruits was also severely reduced in the presence of macroalgae: survival was 79% lower in caged treatments and corals were up to 58% smaller with 75% fewer polyps. These data indicate that macroalgae has an additive effect on coral recruitment by reducing larval settlement and increasing recruit mortality. This research demonstrates that macroalgae can not only inhibit coral recruitment, but also potentially maintain dominance through a positive feedback system.     

Destruction of corals and other reef animals by coral spawn slicks on Ningaloo Reef,Western Australia

In March 1989, most of the corals near Coral Bay, off the north-western coastline of Australia, spawned several nights earlier than usual. Flood, rather than ebb, tides at the time of spawning combined with light north-west winds and low swell conditions to restrict the dispersal of coral propagules and, as a result, large amounts of coral spawn were trapped in the bay, forming extensive slicks. Fish and other animals began to die almost immediately, and over the next few days, over 1 million fish, representing at least 80 species, were washed ashore. A survey of the benthic communities revealed extensive mortality of corals and other reef animals over an area of about 3 km². Live coral cover in this area decreased from 42.9% to 9.4% and several large coral colonies up to 10 m in diameter were killed. The observed mortality was presumably the result of hypoxia (oxygen depletion) created initially by the respiratory demand of the coral spawn and maintained by the biological oxygen demand of the decomposing spawn slicks and dead animals. Anecdotal reports of corals and other reef animals dying in the vicinity of coral spawn slicks on other reefs in Western Australia suggest that this phenomenon may be a relatively common event on shallow coral reefs where coral mass spawning occurs. These records and observations document, for the first time, a new source of natural disturbance that has a significant influence on the community structure of some coral reefs.     

Population genetics of the corallivorous gastropod Drupella cornus at Ningaloo Reef,Western Australia

A precipitous increase in the abundance of the corallivorous snail Drupella cornus at Ningaloo Reef, Western Australia, raises fundamental questions about the population structure and genetics of this species. We examined genetic heterogeneity at ten polymorphic allozyme loci among samples of adult D. cornus from nine sites along 180 km of Ningaloo Reef, plus two sites from the Abrolhos Islands and one from the Dampier Archipelago, spanning a total distance of 1170 km. Variations in allelic frequencies were small (average F_ST=0.007), indicating that a high degree of planktonic dispersal is the norm. Nevertheless, some heterogeneity among samples was found at four of the loci. This heterogeneity occurred within Ningaloo Reef and did not increase with geographic distance. The local heterogeneity was not a function of habitat type but seemed to be associated with stage of outbreak. However, all outbreak populations came from within Ningaloo Reef and the non-outbreak populations were from outside Ningaloo Reef proper. Our results show peculiarities in the genetic structure of D. cornus on Ningaloo Reef, but the causes are not understood. Correspondence to: K. Holborn     

Oceanographic and atmospheric phenomena influence the abundance of whale sharks at Ningaloo Reef, Western Australia

Seasonal observations of whale shark abundance recorded by ecotourist operators at Ningaloo Reef, Western Australia from 1999 to 2004 were compared with weekly regional and global oceanographic and atmospheric variables, including average sea surface temperatures, along-shelf wind shear, sea level and the Southern Oscillation Index (SOI). Estimates of these physical variables were derived from either ground-based data or from remote sensing instruments. A generalised linear mixed-effects modelling (GLMM) approach with random sampling and model simulation was used to determine the relationships between the number of whale sharks and all model variants of the environmental parameters, using information-theoretic weights of evidence to rank models. SOI and wind shear had the most support for explaining the deviance in weekly whale shark abundance at Ningaloo Reef during a season. The SOI and wind shear variables positively influenced whale shark abundance such that more sharks were sighted when the Southern Oscillation was stronger and along-shelf winds were increasingly prevalent. This may reflect changes in the strength of oceanographic processes such as the Leeuwin Current (in response to the Southern Oscillation) and wind/current driven upwelling which may affect the abundance of whale sharks transported to the region and/or the availability of their prey by driving productivity changes.     

Reproductive Biology of the Halfmoon Grouper, Epinephelus rivulatus, at Ningaloo Reef, Western Australia

The reproductive biology and sexual pattern of Epinephelus rivulatus were examined within the waters of Ningaloo Reef, Western Australia. Population structure and gonad morphology show that E. rivulatus is a protogynous hermaphrodite. Mature females ranged in size from 144 to 350mm fork length (FL), with 50% sexually mature at 194mm FL. Males were larger than females and ranged in size from 221 to 381mm FL. There were also intrasexual differences in body size and the median size at which sex-change occurred within each site. Sex ratios were consistent between sites with approximately one male to 5.5 mature females. Most female E. rivulatus (>50%) were reproductively active from July to December when water temperatures were relatively cool and daylight hours were increasing. During this time reproduction occurred periodically, and a female was capable of spawning at least twice over two or three consecutive days.     

Socially controlled sex-change in the half-moon grouper,Epinephelus rivulatus,at Ningaloo Reef,Western Australia

The cues controlling sex-change have been elucidated for various species of hermaphroditic fishes that inhabit coral reefs, but not for the epinepheline serranids. A male removal experiment conducted on an assemblage of the half-moon grouper, Epinephelus rivulatus, demonstrated that protogynous sex-change in this species is socially controlled, possibly by the suppressive dominance of males and a threshold sex ratio. The experiment showed that a reproductively ripe female can change sex and become a male with ripening testis within 3 weeks. However, this process can be delayed, slowed, or stopped by the presence of other males in the area.     

Outbreak densities of the coral predator Drupella in relation to in situ Acropora growth rates on Ningaloo Reef,Western Australia

Coral Reefs - Outbreaks of coral predators are defined as increases (often rapid) in their abundance above threshold densities that can be sustained by local coral assemblages, which in turn...     

Sponge gardens of Ningaloo Reef (Carnarvon Shelf, Western Australia) are biodiversity hotspots

During a multi-agency Australian Government initiative sponges were sampled at three areas from Carnarvon Shelf, NW Australia. Sponges were identified to lowest possible level, largely as morphospecies (84%). A searchable and interactive taxonomic catalogue was created and is publicly accessible through the Ningaloo Atlas collated by the Australian Institute for Marine Science. The sponge gardens on Carnarvon Shelf are patchily distributed but highly diverse and occasionally extremely dense. We examined 754 specimens and distinguished 261 species belonging to 112 genera. Species accumulation curves indicate that this species number does not represent local sponge biodiversity, which is projected to reach up to 840 species with additional sampling. Many observed species appear to be new to science, 81% occurred only at one of the three areas, about 56% were singletons, and 76% had a wet weight of ≤500 g. Detailed spatial analyses were difficult due to sampling design, but general trends could be detected. The northern areas, where the Australian continental shelf is narrowest, favour sponges with a higher content of inorganic skeleton and growth forms able to withstand the strong tidal currents and exposure typical for this area. Sponges were most abundant at the shelf edge, where massive forms dominated. While the central and northern areas are protected by zoning regulations, the southern area had the highest species diversity, the largest individuals and the densest distributions, suggesting additional conservation measures may be required. Western Australia is clearly an important, but under-studied bioregion for sponges, and future research foci are proposed.     

Uptake of picophytoplankton,bacterioplankton and virioplankton by a fringing coral reef community (Ningaloo Reef,Australia)

We examined the importance of picoplankton and virioplankton to reef trophodynamics at Ningaloo Reef, (north-western Australia), in May and November 2008. Picophytoplankton (Prochlorococcus, Synechococcus and picoeukaryotes), bacterioplankton (inclusive of bacteria and Archaea), virioplankton and chlorophyll a (Chl a) were measured at five stations following the consistent wave-driven unidirectional mean flow path of seawater across the reef and into the lagoon. Prochlorococcus, Synechococcus, picoeukaryotes and bacterioplankton were depleted to similar levels (~40% on average) over the fore reef, reef crest and reef flat (=‘active reef’), with negligible uptake occurring over the sandy bottom lagoon. Depletion of virioplankton also occurred but to more variable levels. Highest uptake rates, m, of picoplankton occurred over the reef crest, while uptake coefficients, S (independent of cell concentration), were similarly scaled over the reef zones, indicating no preferential uptake of any one group. Collectively, picophytoplankton, bacterioplankton and virioplankton accounted for the uptake of 29 mmol C m⁻² day⁻¹, with Synechococcus contributing the highest proportion of the removed C. Picoplankton and virioplankton accounted for 1–5 mmol N m⁻² day⁻¹ of the removed N, with bacterioplankton estimated to be a highly rich source of N. Results indicate the importance of ocean–reef interactions and the dependence of certain reef organisms on picoplanktonic supply for reef-level biogeochemistry processes.     

Multi-Year Impacts of Ecotourism on Whale Shark (Rhincodon typus) Visitation at Ningaloo Reef,Western Australia

In-water viewing of sharks by tourists has become a popular and lucrative industry. There is some concern that interactions with tourists with ecotourism operations might harm sharks through disruption of behaviours. Here, we analysed five years of whale shark (Rhincodon typus) encounter data by an ecotourism industry at Ningaloo Reef, Western Australia, to assess the impact of ecotourism interactions on shark visitation, within the context of the biological and physical oceanography of the region. Our data base consisted of 2823 encounter records for 951 individual whale sharks collected by ecotourism operators between 2007 and 2011. We found that total encounters per whale shark and encounters per boat trip increased through time. On average, whale sharks re-encountered in subsequent years were encountered earlier, stayed longer and tended to be encountered more often within a season than sharks that were only encountered in a single year. Sequential comparisons between years did not show any patterns consistent with disturbance and the rate of departure of whale sharks from the aggregation was negatively correlated to the number of operator trips. Overall, our analysis of this multi-year data base found no evidence that interactions with tourists affected the likelihood of whale shark re-encounters and that instead, physical and biological environmental factors had a far greater influence on whale shark visitation rates. Our approach provides a template for assessing the effects of ecotourism interactions and environmental factors on the visitation patterns of marine megafauna over multiple years.     

Description of a new species of giant clam (Bivalvia: Tridacnidae) from Ningaloo Reef,Western Australia

A new species of giant clam from northern Australian coastal waters is distinguished principally on genetic evidence. Of Recent tridacnids, Tridacna ningaloo n. sp. is morphologically closest to the most widespread species in the Indo-Pacific, Tridacna maxima (Röding, 1798), yet genetically closest to the species pair T. squamosa Lamarck, 1819 plus T. crocea Lamarck, 1819. Genotype data are provided for the type material of T. ningaloo n. sp. The greatest significance of this new, cryptic species is that it casts doubt on the correctness of the ‘historical’ giant clam species defined solely on conchological characters, particularly T. maxima. This paper supports the retention of all giant clams in the family Tridacnidae, as distinct from the Cardiidae, because of their numerous morphological apomorphies, specialised ecological niche, and independent acquisition of symbiotic zooxanthellae.     

Reproductive behavior of the halfmoon grouper, <Emphasis Type="Italic">Epinephelus rivulatus</Emphasis>, at Ningaloo Reef,Western Australia

Behaviors associated with spawning by the halfmoon grouper, Epinephelus rivulatus, at Ningaloo Reef, Western Australia, are described from in situ observations made each evening throughout most of a lunar cycle. Spawning occurred after sunset on six consecutive evenings during the full moon period. During this time males were particularly aggressive toward one another and maintained high levels of activity among the gravid females that rested within each of their territories. Spawning occurred when a male swam alongside a responsive female and the pair rose in a tight spiral 1–1.5 m into the water column before releasing gametes and returning to the seabed. Spawning activity was followed by a longer nonspawning period (ca. 20 days), when fewer intraspecific interactions were observed and gamete reserves were replenished. Histological and behavioral evidence suggests that this cycle of spawning and replenishment may occur on a monthly basis. Although individual fish, particularly females, moved into certain areas to spawn, E. rivulatus did not form spawning aggregations as do larger species of grouper.     

Patterns of recruitment and microhabitat associations for three predatory coral reef fishes on the southern Great Barrier Reef, Australia

This study examined recruitment patterns and microhabitat associations for three carnivorous fishes, Plectropomus maculatus, Lutjanus carponotatus and Epinephelus quoyanus, at the Keppel Islands, southern Great Barrier Reef, Australia. Habitat selectivity was highest for recruits that were found mostly with corymbose Acropora, predominantly on patches of live coral located over loose substrates (sand). Adults were more commonly associated with tabular Acropora. The proportion of P. maculatus (72 %) found with live corals was higher than for L. carponotatus (68 %) and E. quoyanus (44 %). Densities of recruits were highly variable among locations, but this was only partly related to availability of preferred microhabitats. Our findings demonstrate that at least some carnivorous reef fishes, especially during early life-history stages, strongly associate with live corals. Such species will be highly sensitive to increasing degradation of coral reef habitats.     

Responses of coral and fish assemblages to a severe but short-lived tropical cyclone on the Great Barrier Reef,Australia

Changes in reef assemblages of corals and fishes following a tropical cyclone were assessed using data sets from (1) manta tow surveys of entire reef perimeters and (2) intensive surveys of specific sites, across 11 reefs lying close to the cyclone's track. Only one of the reefs experienced an obvious and immediate decline in mean coral cover (from 24 to 8%) due to the cyclone. The abundance and species richness of adult damselfish assemblages on intensive survey sites at this reef were not affected in the short term (6-8 weeks), despite the removal of 48% of living hard coral. Assemblages of adult fishes showed a similar lack of response at three other reefs where no significant habitat changes had occurred. Eleven to twelve months later, the total abundance of damselfishes had decreased substantially at eight of the sampled reefs, while the abundance of larger mobile fishes remained stable. We infer that the effects on coral assemblages reflect the short duration and orientation of the cyclone, the history of exposure to wave energy (influencing life-form structure and therefore degree of fragility), and the degree of consolidation of the reef matrix. The lack of short-term effects of the cyclone on adult fishes shows that these fishes can endure periods of intense underwater turbulence. The lack of change in damselfish assemblages weeks after loss of coral cover implies that this resource was not limiting adult fish densities. The reasons for widespread decreases in damselfish numbers 11-12 months after the cyclone are unknown.     

Movement in a large predatory fish: coral trout, Plectropomus leopardus (Pisces: Serranidae), on Heron Reef, Australia

 Movement by the larger more mobile species of coral reef fish plays a significant role in determining patterns in abundance and population structure. Fish movement is also relevant to the use and effectiveness of marine reserves in managing fish populations. Coral trout are large piscivorous serranids supporting major fisheries on the Great Barrier Reef (GBR). This study reports on the within-reef movement of the common coral trout, Plectropomus leopardus, at Heron Reef, southern GBR, over a twelve month period, investigated by tagging and underwater tracking. Tracking of coral trout revealed no apparent relationship between the area moved and stage of tide or time of day. However, movement areas were affected by the size of fish: in spring a linear relationship between fish size and area of movement was measured, but in summer the largest (male) fish moved over significantly smaller areas than medium-sized fish. Movement of males may be related to cleaning behaviour and spawning. Fifty nine percent (n=101) of the tagged fish were resighted over periods of 4–5 months, in “home sites” measuring ∼2000 m². Coral trout were not restricted to home sites, but moved on average 2 km along the reef slope; maximum distances of 7–7.5 km were measured. Coral trout appear to range as mobile, opportunistic predators, but also maintain home sites for access to shelter and cleaning stations. Accepted: 1 August 1996     

Habitat associations of fish assemblages in the Cache River, Illinois

Fish and habitat were sampled by state agencies at 48 stations throughout the Cache River watershed, Illinois between 1992 and 2009. Two distinct fish assemblages were identified, one primarily found in the lower mainstem Cache River and a second found throughout tributaries and the upper mainstem Cache River. Using a canonical correspondence analysis, the distribution of fish species was largely explained by substrate, land use, drainage area and local habitat features. Creek chub, central stoneroller, fringed darter and fantail darter are species found to be positively associated with gravel substrate and forest. In contrast, black buffalo, gizzard shad, smallmouth buffalo, freshwater drum and bigmouth buffalo were positively associated with drainage area, silt, channel width and row crops. Cobble appears to be rare habitat associated with fringed darter, freckled madtom and fantail darter. Results suggest that substrate, land use and local habitat features influence fish assemblages within the Cache River watershed. This information contributes to both understanding aquatic community structure in a highly altered yet diverse watershed as well as management activities within the Cache River watershed.