Gomphia barberi,a new species of Ochnaceae from Tirunelveli Hills,Western Ghats of India

Gomphia barberi sp. nov. (Ochnaceae) is described with an illustration from the Tirunelveli Hills of southern Western Ghats of Tamil Nadu, India.     

Psychotria henryana (Rubiaceae), a new species from the southern Western Ghats,India

Psychotria henryana (Rubiaceae), a new species from the hills of Tirunelveli and Kanyakumari districts in Tamil Nadu at the core zone of Kalakad‐Mundanthurai Tiger Reserve and Agasthiyamalai Biosphere Reserve on the southern Western Ghats of India, is described and illustrated.     

Sonerila janakiana sp. nov., a stoloniferous species of Melastomataceae from India

Sonerila janakiana, a new tuberous, scapigerous and stoloniferous species of Melastomataceae collected from exposed wet rocks of evergreen and semi evergreen forests in the Nilgiris and Wayanad districts of Tamil Nadu and Kerala states on the Western Ghats in India is described and illustrated. Apart from other characteristics, it is distinguished from all hitherto known species of the genus in India by having stolons and dimorphic leaves. The stolons produced from tubers terminate and develop into new tubers producing new plants.     

<Emphasis Type="Italic">Dimeria jayachandranii</Emphasis> (Poaceae), a new species from the Western Ghats,India

Summary  A new grass, Dimeria jayachandranii Arisdason & P. Daniel is described and illustrated from the Anamalais Hills on the Western Ghats of Tamil Nadu.     

Length–weight relationships of Channa punctata (Bloch, 1793) from Western Ghats rivers of Tamil Nadu

The study deals with the length–weight relationships of 1940 spotted murrel, Channa punctata (Bloch, 1793), collected in the Tamirabarani, Siruvani, Vellar and Cauvery rivers of Western Ghats, Tamil Nadu, India in the years 2001 through 2003. Lengths varied from 5 to 27 cm. Linear regression was used for the study and a trend line graph applied to compare conditions in the various rivers as per relationships. Results of the present study show that there is no significant difference (P > 0.005) in the length–weight relationship as a function of sex in the Siruvani, Vellaru and Cauvery populations, whereas there is a significant difference between males and females in the Tamirabarani population, indicating non‐homogeneity of these relationships.     

High genetic diversity in the coat protein and 3′ untranslated regions among geographical isolates of<Emphasis Type="Italic">Cardamom mosaic virus</Emphasis> from south India

A survey was conducted to study the biological and genetic diversity ofCardamom mosaic virus (CdMV) that causes the most widespread disease in the cardamom growing area in the Western Ghats of south India. Six distinct subgroups were derived based on their symptomatology and host range from the sixty isolates collected. The serological variability between the virus isolates was analysed by ELISA and Western blotting. The 3′ terminal region consisting of the coat protein (CP) coding sequence and 3′ untranslated region (3′UTR) was cloned and sequenced from seven isolates. Sequence comparisons revealed considerable genetic diversity among the isolates in their CP and 3′UTR, making CdMV one of the highly variable members ofPotyviridae. The possible occurrence of recombination between the isolates and the movement of the virus in the cardamom tract of south India are discussed.     

Comparison of Groundnut bud necrosis virus isolates based on movement protein (NSm) gene sequences

The nucleotide and amino acid sequences of the movement protein (NSm) genes of five isolates of Groundnut bud necrosis virus (GBNV) originating from different hosts and parts of India such as cowpea and tomato from Kerala, groundnut from Tamil Nadu, and potato from Madhya Pradesh and Rajasthan were determined and compared to the known NSm sequences. Sequence analysis revealed that the NSm genes of GBNV isolates were identical in length (924 bp encoding 307 amino acids). GBNV isolates shared maximum identity (98–100%) at amino acid levels with GBNV‐Type isolate, while 82–83% and 34–65% amino acid sequence identities were observed with Watermelon silver mottle virus and other Tospoviruses respectively. The NSm genes among GBNV isolates originating from different hosts and locations appeared highly conserved (93–100%), suggesting their common origin.     

A Study on the Halophilic Archaeal Diversity from the Food Grade Iodised Crystal Salt from a Saltern of India

Microbiology - Present study aimed to evaluate culturable halophilic archaeal diversity of iodised crystal salt, obtained from the solar salterns of Vedaranyam, Tamil Nadu, India. Bright...     

Characterization of the Bacillus thuringiensis strains isolated from Taiwan

Over 100 Bacillus thuringiensis (Bt) isolates which produced phase bright inclusions have been isolated from soil samples from different areas in Taiwan. Three types of crystal proteins were visualized by phase contrast microscopy. Among these isolates, only 14 different types of plasmid profiles have been observed. They all possess a variety of plasmids ranging from a few kb to around 250 kb in size. With respect to the crystal protein profiles, the plasmid profiles, and the shapes of crystal proteins, we found that the majority of our isolates (87%) were different from most of the known Bt strains. Our other two types of isolates (10 and 3%) resembled Bt var. kurstaki HD1 and Bt var. israelensis, respectively. Most of our isolates were active against Bombyx mori (Lepidoptera) and Aedes aegypti (Diptera). Most interestingly, two of our isolates, Nos. 82 and 96, were found highly toxic to Heliothis virescens, even compared with the standard strain, Bt var. kurstaki HD1. Using insecticidal crystal protein (ICP) gene probe from Bt var. aizawai HD-133 to probe the total DNA of our isolates, we observed that at least one plasmid from each of the tested strains reacted with the probe. A 10 kb plasmid from some of our isolates hybridized with the probe. This probably is the first evidence demonstrating that the ICP gene sequence can be found in a low molecular weight plasmid.     

Bacillus thuringiensis in caterpillars and associated materials collected from protected tropical forests in northwestern Costa Rica

Bacillus thuringiensis (Bt) synthesizes crystalline inclusions that are toxic to caterpillars (Lepidoptera) and other orders of invertebrates. Materials associated with 37 caterpillars from 16 species, collected while feeding on 15 different species of host plants in dry, cloud and rain forests located in the Area de Conservación Guanacaste in northwestern Costa Rica, were examined for the presence of Bt. From a total of 101 derived samples, 25 Bt isolates were cultured: 56% from host plant leaves, 8% from caterpillar guts and 36% from caterpillar fecal pellets. Bt was isolated from at least one sample in 38% of the systems constituted by the food plant, gut and fecal pellets corresponding to a single caterpillar. Four different morphologies of crystalline inclusions were observed, with bipyramidal and irregular crystal morphologies being the most prevalent.     

Abelmoschus enbeepeegearense sp. nov. (Malvaceae), an endemic species of okra from Western Ghats,India

Abelmoschus enbeepeegearense J. John et al. is a new species occurring at low elevations in the Western Ghats of India, comprising Kerala, Karnataka and Tamil Nadu. The taxon is morphologically allied to A. moschatus subsp. moschatus, A. moschatus subsp. tuberosus and A. crinitus, but easily distinguishable by virtue of its orthotropic branching, 3–5‐angled leaves, glandular hairy plant body with whitish waxy secretions, glandular non‐setose epiclayx segmens which is more than eight in number and ovate hirsute fruits with a short mucro at the apex. It can be crossed with all three taxa with varying degree of success, but the hybrids are sterile. The material belonging to it was earlier identified as and placed under A. moschatus Medik. The taxon is described and illustrated with notes on its phenology, ecology and distribution. In additions, a key to all Abelmoschus taxa occurring in India is provided.     

Oral health behaviour,practices, status and the dental treatment needs among paliyan and pulayan tribes in India

It is of interest to document the The Oral Health heigene data among the paliyan and pulayan tribes in India. The Paliyan and Pulayan tribes inhabit a narrow strip of Western Ghats in the hilly regions of Madurai, Dindigul, Theni, Tirunelveli and Virudhunagar districts of Tamil Nadu. Subjects aged 5yrs and above are used in this study. The WHO assessment form was used to assess the oral health status. Results show that 589 (58%) ignored the oral health problems, 225 (22.2%) relied on self-medications, 142 (14%) consulted a general physician, 35 (3.5%) had visited a dentist and the remaining 23 (2.3%) were dependent upon over the counter medications from a pharmacy. Thus, the prosthetic need was highest among the 55 + yrs age group, 36 (48.6%) required maxillary prosthesis and 21 (28.4%) required mandibular prosthesis.     

Molecular Characterization and Genetic Diversity of Insecticidal Crystal Protein Genes in Native Bacillus thuringiensis Isolates

The Western Ghats of Karnataka natural ecosystem are among the most diverse and is one of the eight hottest hotspots of biological diversity in the world, that runs along the western part of India through four states including Karnataka. Bacillus thuringiensis (Bt) strains were isolated from soils of Western Ghats of Karnataka and characterized by molecular and analytical methods as a result of which 28 new Bt-like isolates were identified. Bt strains were isolated from soil samples using sodium acetate selection method. The morphology of crystals was studied using light and phase contrast microscopy. Isolates were further characterized for insecticidal cry gene by PCR, composition of toxins in bacterial crystals by SDS-PAGE cloning, sequencing and evaluation of toxicity was done. As a result 28 new Bt-like isolates were identified. Majority of the isolates showed the presence of a 55 kDa protein bands on SDS-PAGE while the rest showed 130, 73, 34, and 25 kDa bands. PCR analysis revealed predominance of Coleopteran-active cry genes in these isolates. The variations in the nucleotide sequences, crystal morphology, and mass of crystal protein(s) purified from the Bt isolates revealed genetic and molecular diversity. Three strains containing Coleopteran-active cry genes showed higher activity against larvae Myllocerus undecimpustulatus undatus Marshall (Coleoptera: Curculionidae) than B. thuringiensis subsp. Morrisoni. Results indicated that Bt isolates could be utilized for bioinsecticide production, aiming to reduce the use of chemical insecticide which could be useful to use in integrated pest management to control agriculturally important pests for sustainable crop production.     

A survey of die-back disease of neem in Tamil Nadu,India and PCR-based confirmation of the isolates

A survey of die-back disease of neem was done in different agro climatic regions of Tamil Nadu, India using Global Positioning System (GARMIN 12). Twigs of Azadirachta indica (Neem) infected with die-back were collected from different regions of Tamil Nadu, India and they were further analyzed to determine the pathogen. Phomopsis azadirachtae the causal organism was isolated on malt extract agar from die-back infected neem twigs. They were identified by conventional and molecular methods. Phomopsis genus specific primers (5.8S r-DNA) were then used for the confirmation of P. azadirachtae – the causative agent of die-back of neem by Polymerase chain reaction (PCR). Studies revealed the amplification of expected 141bp DNA in P. azadirachtae isolated from the diseased trees of different regions of Tamil Nadu confirming the causal organism of die-back of neem. Studies revealed a very high incidence of die-back in most of the places of Tamil Nadu. Hand held GPS was used in the study which would help in continuous monitoring of the diseased trees.     

Microbial population dynamics, especially stress tolerant Bacillus thuringiensis, in partially anaerobic rice field soils during post-harvest period of the Himalayan, island, brackish water and coastal habitats of India

Population ( × 10⁷ c.f.u./g dr. soil) of the aerobic (30.5–154.1) and anaerobic (5.9–91.4) heterotrophic, aerobic (24.0–56.0) and anaerobic (2.4–4.2) spore forming, Gram (-)ve (1.6–2.9), phosphate solubilizing (10–20), asymbiotic N₂-fixing (0.5–0.9), sulfur oxidizing (1.1–2.0), nitrifying (1.0–5.8) and denitrifying (12.1–18.7) bacteria; as well as, the actinomycetes (about 10⁴ c.f.u./g dr. soil) and fungi (about 10⁵ c.f.u./g dr. soil) were variable in the partially anaerobic, saline and drain out flooded rice soils during the post harvest period of the Himalayan, brackish water flooded, island and coastal habitats of India. The aerobic heterotrophic and spore forming bacteria were more than the anaerobic counterparts in the soils. Population (0.51–3.51 × 10⁶ c.f.u./g dr. soil) and crystal morphotype (spherical, bipyramidal and polymorphic) of the Bacillus thuringiensis (Bt) isolates of different soils were variable. Bt index was 0.002 at Mahe but 0.006 in other soils. The Bt isolates tolerated 5–12% NaCl. The osmolytes (mg/g dr. wt.) like the amino acids (0.38–99.45) and proline (0.38–0.80); and the antioxidative enzymes (units (U)/mg protein/min) viz. the catalase (0.17–5.59) and superoxide dismutase (0.35–74.46) were related with intrinsic osmotic stress tolerance of the Bt but they formed spores to overcome anoxic stress. Two Bt isolates were potent tolerant to both osmotic and anoxic stresses.     

Biological Decolourization of Textile and Paper Effluents by Pleurotus florida and Agaricus bisporus (White-rot Basidiomycetes)

Summary The extracellular ligninolytic enzymes of white-rot fungi are thought to catalyse the initial steps during the degradation of highly complex compounds like lignin or polycyclic aromatic hydrocarbons. We studied the ability of Pleurotus florida isolated from the foothills of the Western Ghats, India to decolourize the three dyestuffs, Reactive Green, Yellow and Blue, which are widely used in the textile industry around Coimbatore, Tamil Nadu, India. The crude culture filtrate of Pleurotus florida when incubated with different concentrations of dye decolourized it efficiently on the third day. The highest colour removal was found in the case of Reactive Blue. However, when Agaricus bisporus extract was supplemented with Pleurotus florida filtrate, the efficiency increased. The dye decolourization was advanced to the second day and the efficiency of dye decolourization of Reactive Yellow was 89% followed by Reactive Green, which was 45% when a dye concentration of 0.5% was used. Pleurotus florida filtrate alone and in combination with Agaricus bisporus extract reduced the aromatic compounds in textile and paper industry effluents on the first day with >90% efficiency.     

Diversity of Bacillus thuringiensis in the rice field soils of different ecologies in India

Diversity of the Bacillus thuringiensis (Bt) in the rice field soils of different ecologies viz. the island (Port Blair), the Himalayan (Srinagar), brackish water (Mahe) and coastal mesophilic (Mangalore) habitats was analyzed by phenotypic characterization of 5, 66, 14 and 54 Bt isolates, respectively. The Bt isolates produced either monotypic (bipyramidal or spherical) or heterotypic (polymorphic-bipyramidal or bipyramidal-rhomboidal) crystals. The organisms were generally resistant to the penicillin group of antibiotics, tolerated 5–12% NaCl and 0.5M Na-acetate. The Bt isolates contained 1–5 plasmids of 0.89–58.61 kbp sizes. The plasmid profiles had no correlation with crystal morphology or salt tolerance of different bacteria. Each soil was inhabited by different types of Bt. Two Bt strains of Mangalore and one strain each of the other places were phenotypically similar. One Bt strain each of Port Blair and Srinagar was different from all other strains.     

Spatial distribution of nematode genera in relation to host plants of Western Ghats,Tamil Nadu,India

A survey of plant parasitic nematodes (PPN) abundance and diversity was conducted in foothills of Western Ghats at Coimbatore and Nilgiris districts in Tamil Nadu, India. Our study pointed to evaluate the PPN association with weeds, shrubs, and herbs including some agricultural crop cover both agro and forest ecosystems. Soil samples were collected around the rhizosphere of the plants and nematodes were isolated, counted under a microscope and identified by morphological characters. We collected 415 soil samples around the rhizosphere of 84 major plant families. Among 84 plant families, we found 13 PPN genera those generally responsible for cash crop yield loss. The genus Helicotylenchus spp., and Meloidogyne spp., were found frequent (226,136 samples) and rarely Hemicycliophora spp.,. The PPN diversity was measured by Shannon diversity index which showed that the diversity of PPN found higher in plant species those from the families Rosaceae (2.20) and Rubiaceae (2.13). We also recorded the PPN richness was dominated in four plant families. This result reveals that the PPN diversity and richness are positively correlated with host plant species diversity and altitude. Further, our study concludes that a wild plant in the forest ecosystem behaves like a reservoir of PPN.     

Analysis of genetic variability of Fusarium oxysporum f. sp. cepae the causal agent of basal rot on onion using RAPD markers

Genetic variability among isolates of Fusarium oxysporum f. sp. cepae was obtained from different onion-growing areas of Tamil Nadu, India. Random amplified polymorphic DNA (RAPD) analysis was carried out using 12 random primers, each of them consisting of 10 base pairs. Four out of the 12 primers were differentiated between some of the tested F. oxysporum f. sp. cepae isolates. Analysis of the genetic coefficient matrix derived from the scores of RAPD profile showed that minimum and maximum per cent similarities among the F. oxysporum f. sp. cepae isolates were in the range of 14–85%. Cluster analysis, using the unweighted pair-group method with arithmetic average, clearly separated the isolates into two clusters (A and B) confirming the genetic diversity among the isolates of F. oxysporum f. sp. cepae from onion.