Soil Stoichiometry Mediates Links Between Tree Functional Diversity and Soil Microbial Diversity in a Temperate Forest

Ecosystems - Interactions between plants and soil microbial communities underpin soil processes and forest ecosystem function, but the links between tree diversity and soil microbial diversity are...     

Exotic Earthworm Invasion and Microbial Biomass in Temperate Forest Soils

Invasion of north temperate forest soils by exotic earthworms has the potential to alter microbial biomass and activity over large areas of North America. We measured the distribution and activity of microbial biomass in forest stands invaded by earthworms and in adjacent stands lacking earthworms in sugar maple-dominated forests in two locations in New York State, USA: one with a history of cultivation and thin organic surface soil horizons (forest floors) and the other with no history of cultivation and a thick (3–5 cm) forest floor. Earthworm invasion greatly reduced pools of microbial biomass in the forest floor and increased pools in the mineral soil. Enrichment of the mineral soil was much more marked at the site with thick forest floors. The increase in microbial biomass carbon (C) and nitrogen (N) in the mineral soil at this site was larger than the decrease in the forest floor, resulting in a net increase in total soil profile microbial biomass in the invaded plots. There was an increase in respiration in the mineral soil at both sites, which is consistent with a movement of organic matter and microbial biomass into the mineral soil. However, N-cycle processes (mineralization and nitrification) did not increase along with respiration. It is likely that the earthworm-induced input of C into the mineral soil created a microbial sink for N, preventing an increase in net mineralization and nitrification and conserving N in the soil profile.     

Microbial Community Responses to Atmospheric Carbon Dioxide Enrichment in a Warm-Temperate Forest

Forest productivity depends on nutrient supply, and sustained increases in forest productivity under elevated carbon dioxide (CO₂) may ultimately depend on the response of microbial communities to changes in the quantity and chemistry of plant-derived substrates, We investigated microbial responses to elevated CO₂ in a warm-temperate forest under free-air CO₂ enrichment for 5 years (1997–2001). The experiment was conducted on three 30 m diameter plots under ambient CO₂ and three plots under elevated CO₂ (200 ppm above ambient). To understand how microbial processes changed under elevated CO₂, we assayed the activity of nine extracellular enzymes responsible for the decomposition of labile and recalcitrant carbon (C) substrates and the release of nitrogen (N) and phosphorus (P) from soil organic matter. Enzyme activities were measured three times per year in a surface organic horizon and in the top 15 cm of mineral soil. Initially, we found significant increases in the decomposition of labile C substrates in the mineral soil horizon under elevated CO₂; this overall pattern was present but much weaker in the O horizon. Beginning in the 4th year of this study, enzyme activities in the O horizon declined under elevated CO₂, whereas they continued to be stimulated in the mineral soil horizon. By year 5, the degradation of recalcitrant C substrates in mineral soils was significantly higher under elevated CO₂. Although there was little direct effect of elevated CO₂ on the activity of N- and P-releasing enzymes, the activity of nutrient-releasing enzymes relative to those responsible for C metabolism suggest that nutrient limitation is increasingly regulating microbial activity in the O horizon. Our results show that the metabolism of microbial communities is significantly altered by the response of primary producers to elevated CO₂. We hypothesize that ecosystem responses to elevated CO₂ are shifting from primary production to decomposition as a result of increasing nutrient limitation.     

Landscape-Scale Implications of the Edge Effect on Soil Fauna Activity in a Temperate Forest

Although studies on edge effects on species richness and abundance are numerous, the responses of ecosystem processes to these effects have received considerably less attention. How ecosystem processes respond to edge effects is particularly important in temperate forests, where small fragments and edge habitats form a considerable proportion of the total forest area. Soil fauna are key contributors to decomposition and soil biogeochemical cycling processes. Using the bait lamina technique, we quantified soil fauna feeding activity, and its dependence on soil moisture and distance to the edge in a broad-leaved forest in Southern England. Feeding activity was 40% lower at the forest edge than in the interior, and the depth of edge influence was approximately 75 m. A watering treatment showed that moisture limitation was the main driver of the reduced feeding activity at the edge. In England, only 33% of the forest area is greater than 75 m from the edge. Therefore, assuming that the results from this single-site study are representative for the landscape, it implies that only one- third of the forest area in England supports activity levels typical for the forest core, and that edge effects reduce the mean feeding activity across the landscape by 17% (with lower and upper 90% confidence intervals of 1.3 and 23%, respectively). Changing climatic conditions, such as summer droughts may exacerbate such effects as edges lose water faster than the forest interior. The results highlight the importance of taking edge effects into account in ecological studies and forest management planning in highly fragmented landscapes.     

Effects of Manure Compost Application on Soil Microbial Community Diversity and Soil Microenvironments in a Temperate Cropland in China

The long-term application of excessive chemical fertilizers has resulted in the degeneration of soil quality parameters such as soil microbial biomass, communities, and nutrient content, which in turn affects crop health, productivity, and soil sustainable productivity. The objective of this study was to develop a rapid and efficient solution for rehabilitating degraded cropland soils by precisely quantifying soil quality parameters through the application of manure compost and bacteria fertilizers or its combination during maize growth. We investigated dynamic impacts on soil microbial count, biomass, basal respiration, community structure diversity, and enzyme activity using six different treatments [no fertilizer (CK), N fertilizer (N), N fertilizer + bacterial fertilizer (NB), manure compost (M), manure compost + bacterial fertilizer (MB), and bacterial fertilizer (B)] in the plowed layer (0–20 cm) of potted soil during various maize growth stages in a temperate cropland of eastern China. Denaturing gradient electrophoresis (DGGE) fingerprinting analysis showed that the structure and composition of bacterial and fungi communities in the six fertilizer treatments varied at different levels. The Shannon index of bacterial and fungi communities displayed the highest value in the MB treatments and the lowest in the N treatment at the maize mature stage. Changes in soil microorganism community structure and diversity after different fertilizer treatments resulted in different microbial properties. Adding manure compost significantly increased the amount of cultivable microorganisms and microbial biomass, thus enhancing soil respiration and enzyme activities (p<0.01), whereas N treatment showed the opposite results (p<0.01). However, B and NB treatments minimally increased the amount of cultivable microorganisms and microbial biomass, with no obvious influence on community structure and soil enzymes. Our findings indicate that the application of manure compost plus bacterial fertilizers can immediately improve the microbial community structure and diversity of degraded cropland soils.     

Temporal Changes in the Ectomycorrhizal Community in Two Soil Horizons of a Temperate Oak Forest

The species structure of an ectomycorrhizal (ECM) community was assessed monthly for 15 months in the two horizons (A1 and A2) of an oak temperate forest in northeastern France. Ectomycorrhizal species were identified each month by internal transcribed spacer sequencing. Seventy-five fungal symbionts were identified. The community was dominated by Tomentellaceae, Russulaceae, Cortinariaceae, and Boletales. Four species are abundant in the study site: Lactarius quietus, Tomentella sublilacina, Cenococcum geophilum, and Russula sp1. The relative abundance of each species varied depending on the soil horizon and over time. Some species, such as L. quietus, were present in the A1 and A2 horizons. C. geophilum was located particularly in the A2 horizon, whereas T. sublilacina was more abundant in A1. Some species, such as Clavulina sp., were detected in winter, while T. sublilacina and L. quietus were present all year long. Our results support the hypothesis that a rapid turnover of species composition of the ECM community occurs over the course of a month. The spatial and temporal unequal distribution of ECM species could be explained by their ecological preferences, driven by such factors as root longevity, competition for resources, and resistance to environmental variability.     

Precipitation Pattern Regulates Soil Carbon Flux Responses to Nitrogen Addition in a Temperate Forest

Ecosystems - Changes in precipitation frequency and intensity are predicted to be more intense and frequent accompanying climate change and may have immediate or potentially prolonged effects on...     

Microbial Community Structure and Oxidative Enzyme Activity in Nitrogen-amended North Temperate Forest Soils

Large regions of temperate forest are subject to elevated atmospheric nitrogen (N) deposition which can affect soil organic matter dynamics by altering mass loss rates, soil respiration, and dissolved organic matter production. At present there is no general model that links these responses to changes in the organization and operation of microbial decomposer communities. Toward that end, we studied the response of litter and soil microbial communities to high levels of N amendment (30 and 80 kg ha^–1 yr^–1) in three types of northern temperate forest: sugar maple/basswood (SMBW), sugar maple/red oak (SMRO), and white oak/black oak (WOBO). We measured the activity of extracellular enzymes (EEA) involved directly in the oxidation of lignin and humus (phenol oxidase, peroxidase), and indirectly, through the production of hydrogen peroxide (glucose oxidase, glyoxal oxidase). Community composition was analyzed by extracting and quantifying phospholipid fatty acids (PLFA) from soils. Litter EEA responses at SMBW sites diverged from those at oak-bearing sites (SMRO, BOWO), but the changes were not statistically significant. For soil, EEA responses were consistent across forests types: phenol oxidase and peroxidase activities declined as a function of N dose (33–73% and 5–41%, respectively, depending on forest type); glucose oxidase and glyoxal oxidase activities increased (200–400% and 150–300%, respectively, depending on forest type). Principal component analysis (PCA) ordinated forest types and treatment responses along two axes; factor 1 (44% of variance) was associated with phenol oxidase and peroxidase activities, factor 2 (31%) with glucose oxidase. Microbial biomass did not respond to N treatment, but nine of the 23 PLFA that formed >1 mol% of total biomass showed statistically significant treatment responses. PCA ordinated forest types and treatment responses along three axes (36%, 26%, 12% of variance). EEA factors 1 and 2 correlated negatively with PLFA factor 1 (r = –0.20 and –0.35, respectively, n = 108) and positively with PLFA factor 3 (r = +0.36 and +0.20, respectively, n = 108). In general, EEA responses were more strongly tied to changes in bacterial PLFA than to changes in fungal PLFA. Collectively, our data suggests that N inhibition of oxidative activity involves more than the repression of ligninase expression by white-rot basidiomycetes.This revised version was published online in November 2004 with corrections to Volume 48.     

Microbial and Environmental Controls of Methane Fluxes Along a Soil Moisture Gradient in a Pacific Coastal Temperate Rainforest

Most studies of greenhouse gas fluxes from forest soils in the coastal rainforest have considered carbon dioxide (CO₂), whereas methane (CH₄) has not received the same attention. Soil hydrology is a key driver of CH₄ dynamics in ecosystems, but the impact on the function and distribution of the underlying microbial communities involved in CH₄ cycling and the resultant net CH₄ exchange is not well understood at this scale. We studied the growing season variations of in situ CH₄ fluxes, microbial gene abundances of methanotrophs (CH₄ oxidizers) and methanogens (CH₄ producers), soil hydrology, and nutrient availability in three typical forest types across a soil moisture gradient. CH₄ displayed a spatial variability changing from a net uptake in the upland soils (3.9–46 µmol CH₄ m^?2 h^?1) to a net emission in the wetter soils (0–90 μmol CH₄ m^?2 h^?1). Seasonal variations of CH₄ fluxes were related to soil hydrology in both upland and wet soils. Thus, in the upland soils, uptake rates increased with the decreasing soil moisture, whereas CH₄ emission was inversely related to the water table depth in the wet soils. Spatial variability of CH₄ exchange was related to the abundance of genes involved in CH₄ oxidation and production, but there was no indication of a temporal link between microbial groups and CH₄ exchange. Our data show that the abundances of genes involved in CH₄ oxidation and production are strongly influenced by soil moisture and each other and grouped by the upland–wetland classification but not forest type.     

Soil Methane Uptake Increases under Continuous Throughfall Reduction in a Temperate Evergreen,Broadleaved Eucalypt Forest

Soils in temperate forests ecosystems are the greatest terrestrial CH₄ sink globally. Global and regional circulation models predict decreased average rainfall, increased extreme rainfall events and increased temperatures for many temperate ecosystems. However, most studies of soil CH₄ uptake have only considered extended periods of drought rather than an overall decrease in rainfall amount. We measured soil CH₄ uptake from March 2010 to March 2012 after installing passive rainfall reduction systems to intercept approximately 40% of throughfall in a temperate broadleaf evergreen eucalypt forest in south-eastern Australia. Throughfall reduction caused an average reduction of 15.1 ± 6.4% (SE) in soil volumetric water content, a reduction of 19.8 ± 6.9% in soil water-filled pore space (%WFPS) and a 20.1 ± 6.8% increase in soil air-filled porosity. In response to these changes, soil CH₄ uptake increased by 54.7 ± 19.3%. The increase in soil CH₄ uptake could be explained by increased diffusivity in drier soils, whilst the activity of methanotrophs remained relatively unchanged. It is likely that soil CH₄ uptake will increase if rainfall reduces in temperate broadleaf evergreen forests of Australia as a consequence of climate change.     

Land Use History Mediates Soil Biogeochemical Responses to Drought in Temperate Forest Ecosystems

Ecosystems - Terrestrial ecosystems are experiencing increasing frequency and intensity of droughts as a result of climate change. Despite a wealth of previous studies investigating soil responses...     

Fractionation of Carbon Isotopes during Biogenesis of Atmospheric Isoprene

The stable carbon isotope composition of isoprene emitted from leaves of red oak (Quercus rubra L.) was measured. Isoprene was depleted in ¹³C relative to carbon recently fixed by photosynthesis. The difference in isotope composition between recently fixed carbon and emitted isoprene was independent of the isotopic composition of the source CO₂. β-Carotene, an isoprenoid plant constituent, was depleted in ¹³C relative to whole leaf carbon to the same degree as isoprene, but fatty acids were more depleted. Isoprene emitted from leaves fed abscisic acid was much less depleted in ¹³C than was isoprene emitted from unstressed leaves. We conclude that isoprene is made from an isoprenoid precursor that is derived from acetyl-CoA made from recent photosynthate. The carbon isotope composition of isoprene in the atmosphere is likely to be slightly more negative (less ¹³C) than C₃ plant material but when plants are stressed the isotopic composition could vary.     

Multiple Effects of Introduced Mammalian Herbivores in a Temperate Forest

Introduced mammalian herbivores can significantly affect ecosystems. Here, I review evidence on effects of introduced mammalian herbivores in the temperate forest of the southern Andes. Available data suggest that introduced herbivores decrease the abundance of seedlings and saplings of dominant tree species in some forest types, which could impair forest regeneration. They also affect understory species composition. The mechanisms of the effects of introduced herbivores are complex, and include direct effects of browsing or trampling and more complex interactions such as indirect effects through other species. Some native mammalian and avian predators may benefit from increased food availability resulting from high densities of some introduced mammalian herbivores. In turn, enhanced populations of predators may have resulted in increased predation on native prey. Competition for resources and disease transmission have also been proposed as possible negative effects of introduced herbivores on native herbivores, but little evidence supports this claim. Little is known about effects on invertebrates.     

Soil Carbon Accumulation During Temperate Forest Succession on Abandoned Low Productivity Agricultural Lands

Carbon sequestration in soils that have previously been depleted of organic matter due to agriculture is an important component of global strategies to mitigate rising atmospheric CO₂ concentrations. Extensive areas of low productivity farmland have been abandoned from agriculture in eastern North America and elsewhere over the past century, and are naturally regenerating to temperate forests. We investigated the soil carbon sequestration potential of such lands by sampling adjacent mature forest and agricultural field sites, and replicated chronosequences of forest succession on Podzol, Brunisol, and Luvisol soil types that are considered ‘marginal’ for agriculture and have been abandoned extensively across southeastern Ontario, Canada. Total soil organic carbon and nitrogen stocks to 10 cm depth were approximately 32% and 18% lower, respectively, in agricultural fields compared to mature forests. Furthermore, carbon stocks across our 100-year chronosequences increased most within the 0–5 cm soil depth interval, tended to increase within the 5–10 cm interval, and were unaltered within the 10–20 cm interval. Soil type had little effect on the potential magnitude or rates of soil carbon sequestration (~10 g C m^?2 y^?1 in the top 10 cm), perhaps because all sites shared a common vegetation successional pattern. Finally, our investigations of the ‘labile’ free-light carbon and nitrogen fractions in the Brunisol soil type indicated no increases across the chronosequence, implying that soil carbon accumulation was primarily in more recalcitrant pools. Our results indicate that each of these low productivity soil types can be moderate carbon sinks for a century following agricultural abandonment, and strongly suggest that time since abandonment is more important than soil type in determining the potential magnitude of carbon sequestration within this climatic region.     

Spatial Characteristics of Tree Diameter Distributions in a Temperate Old-Growth Forest

This contribution identifies spatial characteristics of tree diameter in a temperate forest in north-eastern China, based on a fully censused observational study area covering 500×600 m. Mark correlation analysis with three null hypothesis models was used to determine departure from expectations at different neighborhood distances. Tree positions are clumped at all investigated scales in all 37 studied species, while the diameters of most species are spatially negatively correlated, especially at short distances. Interestingly, all three cases showing short-distance attraction of dbh marks are associated with light-demanding shrub species. The short-distance attraction of dbh marks indicates spatially aggregated cohorts of stems of similar size. The percentage of species showing significant dbh suppression peaked at a 4 m distance under the heterogeneous Poisson model. At scales exceeding the peak distance, the percentage of species showing significant dbh suppression decreases sharply with increasing distances. The evidence from this large observational study shows that some of the variation of the spatial characteristics of tree diameters is related variations of topography and soil chemistry. However, an obvious interpretation of this result is still lacking. Thus, removing competitors surrounding the target trees is an effective way to avoid neighboring competition effects reducing the growth of valuable target trees in forest management practice.     

Microbial Biomass, Community Structure and Metal Tolerance of a Naturally Pb-Enriched Forest Soil

The effect of long-term elevated soil Pb levels on soil microbiota was studied at a forest site in Norway, where the soil has been severely contaminated with Pb since the last period of glaciation (several thousand years). Up to 10% Pb (total amount, w/w) has been found in the top layer. The microbial community was drastically affected, as judged from changes in the phospholipid fatty acid (PLFA) pattern. Specific PLFAs that were high in Pb-enriched soil were branched (especially br17:0 and br18:0), whereas PLFAs common in eukaryotic organisms such as fungi (18:2ω6,9 and 20:4) were low compared with levels at adjacent, uncontaminated sites. Congruent changes in the PLFA pattern were found upon analyzing the culturable part of the bacterial community. The high Pb concentrations in the soil resulted in increased tolerance to Pb of the bacterial community, measured using both thymidine incorporation and plate counts. Furthermore, changes in tolerance were correlated to changes in the community structure. The bacterial community of the most contaminated soils showed higher specific activity (thymidine and leucine incorporation rates) and higher culturability than that of control soils. Fungal colony forming units (CFUs) were 10 times lower in the most Pb-enriched soils, the species composition was widely different from that in control soils, and the isolated fungi had high Pb tolerance. The most commonly isolated fungus in Pb-enriched soils was Tolypocladium inflatum. Comparison of isolates from Pb-enriched soil and isolates from unpolluted soils showed that T. inflatum was intrinsically Pb-tolerant, and that the prolonged conditions with high Pb had not selected for any increased tolerance.